The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34200 AT2G34200 |
| fragaria_vesca | FvH4_3g07460 |
| malus_domestica | MD10G1277000.v1.1 |
| prunus_persica | Prupe.4G064900_v2.0.a1 Prupe.4G064900_v2.0.a1 |
| pyrus_communis | pycom05g27540 pycom10g23130 |
| rosa_chinensis | RchiOBHm_Chr5g0011391 |
| rosa_laevigata | RLG00000031829 |
| rosa_multiflora | Rmu_sc0009975.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00065060 |
| rosa_rugosa | Rorug04G0456800 |
| rosa_samantha | Rh5AG088500 Rh5BG083600 Rh5CG096900 Rh5DG083500 |
| rosa_wichuraiana | Rw5G007680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccII | CGCG | 1 cut(s) | 244 |
| AciI | CCGC | 3 cut(s) | 125, 242, 521 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 3 cut(s) | 61, 82, 292 |
| AcuI | CTGAAG | 2 cut(s) | 168, 690 |
| AfaI | GTAC | 3 cut(s) | 247, 367, 701 |
| AflIII | ACRYGT | 1 cut(s) | 466 |
| AgsI | TTSAA | 2 cut(s) | 26, 157 |
| AhlI | ACTAGT | 1 cut(s) | 248 |
| AluBI | AGCT | 4 cut(s) | 277, 308, 674, 685 |
| AluI | AGCT | 4 cut(s) | 277, 308, 674, 685 |
| Alw26I | GTCTC | 2 cut(s) | 208, 320 |
| AoxI | GGCC | 1 cut(s) | 126 |
| ApoI | RAATTY | 3 cut(s) | 61, 82, 292 |
| AseI | ATTAAT | 1 cut(s) | 474 |
| AsuHPI | GGTGA | 5 cut(s) | 182, 209, 362, 410, 518 |
| AsuII | TTCGAA | 1 cut(s) | 296 |
| AxyI | CCTNAGG | 1 cut(s) | 447 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BccI | CCATC | 2 cut(s) | 305, 371 |
| BclI | TGATCA | 2 cut(s) | 55, 556 |
| BcoDI | GTCTC | 2 cut(s) | 208, 320 |
| BcuI | ACTAGT | 1 cut(s) | 248 |
| BfaI | CTAG | 3 cut(s) | 249, 278, 585 |
| BisI | GCNGC | 2 cut(s) | 126, 242 |
| BlsI | GCNGC | 2 cut(s) | 127, 243 |
| BmiI | GGNNCC | 1 cut(s) | 444 |
| BmrI | ACTGGG | 1 cut(s) | 416 |
| BmuI | ACTGGG | 1 cut(s) | 416 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| Bpu14I | TTCGAA | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 1 cut(s) | 89 |
| BsaBI | GATNNNNATC | 1 cut(s) | 476 |
| Bse1I | ACTGG | 2 cut(s) | 373, 411 |
| Bse21I | CCTNAGG | 1 cut(s) | 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 476 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseJI | GATNNNNATC | 1 cut(s) | 476 |
| BseMII | CTCAG | 2 cut(s) | 315, 438 |
| BseNI | ACTGG | 2 cut(s) | 373, 411 |
| Bsh1236I | CGCG | 1 cut(s) | 244 |
| BshFI | GGCC | 1 cut(s) | 128 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiSI | CCGG | 1 cut(s) | 566 |
| BsmAI | GTCTC | 2 cut(s) | 208, 320 |
| BsnI | GGCC | 1 cut(s) | 128 |
| Bsp119I | TTCGAA | 1 cut(s) | 296 |
| Bsp143I | GATC | 2 cut(s) | 55, 556 |
| BspACI | CCGC | 3 cut(s) | 125, 242, 521 |
| BspANI | GGCC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 2 cut(s) | 316, 439 |
| BspFNI | CGCG | 1 cut(s) | 244 |
| BspLI | GGNNCC | 1 cut(s) | 444 |
| BspT104I | TTCGAA | 1 cut(s) | 296 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BsrI | ACTGG | 2 cut(s) | 373, 411 |
| BssMI | GATC | 2 cut(s) | 55, 556 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstBI | TTCGAA | 1 cut(s) | 296 |
| BstDEI | CTNAG | 3 cut(s) | 183, 324, 447 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstFNI | CGCG | 1 cut(s) | 244 |
| BstKTI | GATC | 2 cut(s) | 58, 559 |
| BstMAI | GTCTC | 2 cut(s) | 208, 320 |
| BstMBI | GATC | 2 cut(s) | 55, 556 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 131, 665 |
| BstNSI | RCATGY | 2 cut(s) | 237, 470 |
| BstUI | CGCG | 1 cut(s) | 244 |
| Bsu36I | CCTNAGG | 1 cut(s) | 447 |
| BsuRI | GGCC | 1 cut(s) | 128 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BtsI | GCAGTG | 2 cut(s) | 40, 129 |
| BtsIMutI | CAGTG | 2 cut(s) | 40, 129 |
| Csp6I | GTAC | 3 cut(s) | 246, 366, 700 |
| CviAII | CATG | 4 cut(s) | 17, 234, 269, 467 |
| CviJI | RGCY | 8 cut(s) | 128, 241, 277, 308, 356, 624, 674, 685 |
| CviKI_1 | RGCY | 8 cut(s) | 128, 241, 277, 308, 356, 624, 674, 685 |
| CviQI | GTAC | 3 cut(s) | 246, 366, 700 |
| DdeI | CTNAG | 3 cut(s) | 183, 324, 447 |
| DpnI | GATC | 2 cut(s) | 57, 558 |
| DpnII | GATC | 2 cut(s) | 55, 556 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| EciI | GGCGGA | 1 cut(s) | 536 |
| Eco57I | CTGAAG | 2 cut(s) | 168, 690 |
| Eco81I | CCTNAGG | 1 cut(s) | 447 |
| EcoRI | GAATTC | 3 cut(s) | 61, 82, 292 |
| FaeI | CATG | 4 cut(s) | 20, 237, 272, 470 |
| FaiI | YATR | 5 cut(s) | 18, 235, 270, 468, 605 |
| FatI | CATG | 4 cut(s) | 16, 233, 268, 466 |
| FbaI | TGATCA | 2 cut(s) | 55, 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 126, 242 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 2 cut(s) | 126, 242 |
| FspBI | CTAG | 3 cut(s) | 249, 278, 585 |
| GluI | GCNGC | 2 cut(s) | 126, 242 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeIII | GGCC | 1 cut(s) | 128 |
| HapII | CCGG | 1 cut(s) | 566 |
| Hin1II | CATG | 4 cut(s) | 20, 237, 272, 470 |
| HindIII | AAGCTT | 1 cut(s) | 672 |
| HinfI | GANTC | 6 cut(s) | 107, 265, 344, 428, 461, 581 |
| HpaII | CCGG | 1 cut(s) | 566 |
| HphI | GGTGA | 5 cut(s) | 182, 209, 362, 410, 518 |
| Hpy188I | TCNGA | 5 cut(s) | 60, 141, 325, 556, 731 |
| HpyAV | CCTTC | 5 cut(s) | 151, 181, 197, 433, 720 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 2 cut(s) | 8, 653 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 131, 665 |
| HpyF3I | CTNAG | 3 cut(s) | 183, 324, 447 |
| Hsp92II | CATG | 4 cut(s) | 20, 237, 272, 470 |
| Ksp22I | TGATCA | 2 cut(s) | 55, 556 |
| Kzo9I | GATC | 2 cut(s) | 55, 556 |
| LpnPI | CCDG | 6 cut(s) | 333, 354, 392, 459, 579, 682 |
| MaeI | CTAG | 3 cut(s) | 249, 278, 585 |
| MaeIII | GTNAC | 2 cut(s) | 12, 598 |
| MalI | GATC | 2 cut(s) | 57, 558 |
| MboI | GATC | 2 cut(s) | 55, 556 |
| MboII | GAAGA | 3 cut(s) | 161, 212, 393 |
| MluCI | AATT | 8 cut(s) | 61, 82, 173, 292, 301, 511, 612, 641 |
| MlyI | GAGTC | 4 cut(s) | 116, 274, 338, 437 |
| MnlI | CCTC | 7 cut(s) | 115, 223, 250, 346, 442, 450, 511 |
| MseI | TTAA | 4 cut(s) | 474, 548, 611, 681 |
| MspI | CCGG | 1 cut(s) | 566 |
| MvnI | CGCG | 1 cut(s) | 244 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 131, 665 |
| NdeII | GATC | 2 cut(s) | 55, 556 |
| NlaIII | CATG | 4 cut(s) | 20, 237, 272, 470 |
| NlaIV | GGNNCC | 1 cut(s) | 444 |
| NmuCI | GTSAC | 2 cut(s) | 12, 598 |
| NspI | RCATGY | 2 cut(s) | 237, 470 |
| NspV | TTCGAA | 1 cut(s) | 296 |
| PciI | ACATGT | 1 cut(s) | 466 |
| PfeI | GAWTC | 2 cut(s) | 461, 581 |
| PkrI | GCNGC | 2 cut(s) | 127, 243 |
| PleI | GAGTC | 4 cut(s) | 115, 273, 338, 436 |
| PpsI | GAGTC | 4 cut(s) | 115, 273, 338, 436 |
| PscI | ACATGT | 1 cut(s) | 466 |
| PshBI | ATTAAT | 1 cut(s) | 474 |
| PspN4I | GGNNCC | 1 cut(s) | 444 |
| RsaI | GTAC | 3 cut(s) | 247, 367, 701 |
| RsaNI | GTAC | 3 cut(s) | 246, 366, 700 |
| SaqAI | TTAA | 4 cut(s) | 474, 548, 611, 681 |
| SatI | GCNGC | 2 cut(s) | 126, 242 |
| Sau3AI | GATC | 2 cut(s) | 55, 556 |
| SchI | GAGTC | 4 cut(s) | 116, 274, 338, 437 |
| SfuI | TTCGAA | 1 cut(s) | 296 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SpeI | ACTAGT | 1 cut(s) | 248 |
| Sse9I | AATT | 8 cut(s) | 61, 82, 173, 292, 301, 511, 612, 641 |
| SsiI | CCGC | 3 cut(s) | 125, 242, 521 |
| SspMI | CTAG | 3 cut(s) | 249, 278, 585 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaqI | TCGA | 5 cut(s) | 120, 263, 296, 342, 413 |
| TasI | AATT | 8 cut(s) | 61, 82, 173, 292, 301, 511, 612, 641 |
| TauI | GCSGC | 2 cut(s) | 128, 244 |
| TfiI | GAWTC | 2 cut(s) | 461, 581 |
| Tru1I | TTAA | 4 cut(s) | 474, 548, 611, 681 |
| Tru9I | TTAA | 4 cut(s) | 474, 548, 611, 681 |
| TscAI | CASTG | 2 cut(s) | 40, 136 |
| TseFI | GTSAC | 2 cut(s) | 12, 598 |
| Tsp45I | GTSAC | 2 cut(s) | 12, 598 |
| TspDTI | ATGAA | 4 cut(s) | 417, 452, 605, 654 |
| TspRI | CASTG | 2 cut(s) | 40, 136 |
| VspI | ATTAAT | 1 cut(s) | 474 |
| XapI | RAATTY | 3 cut(s) | 61, 82, 292 |
| XceI | RCATGY | 2 cut(s) | 237, 470 |
| XspI | CTAG | 3 cut(s) | 249, 278, 585 |