The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34200 AT2G34200 |
| fragaria_vesca | FvH4_3g07460 |
| malus_domestica | MD10G1277000.v1.1 |
| prunus_persica | Prupe.4G064900_v2.0.a1 Prupe.4G064900_v2.0.a1 |
| pyrus_communis | pycom05g27540 pycom10g23130 |
| rosa_chinensis | RchiOBHm_Chr5g0011391 |
| rosa_laevigata | RLG00000031829 |
| rosa_multiflora | Rmu_sc0009975.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00065060 |
| rosa_rugosa | Rorug04G0456800 |
| rosa_samantha | Rh5AG088500 Rh5BG083600 Rh5CG096900 Rh5DG083500 |
| rosa_wichuraiana | Rw5G007680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 457 |
| AciI | CCGC | 1 cut(s) | 847 |
| AcsI | RAATTY | 2 cut(s) | 82, 301 |
| AfaI | GTAC | 1 cut(s) | 900 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 260, 690 |
| AflIII | ACRYGT | 1 cut(s) | 481 |
| AgsI | TTSAA | 5 cut(s) | 107, 125, 306, 596, 812 |
| AjiI | CACGTC | 1 cut(s) | 717 |
| AjnI | CCWGG | 1 cut(s) | 253 |
| AluBI | AGCT | 2 cut(s) | 658, 700 |
| AluI | AGCT | 2 cut(s) | 658, 700 |
| Alw26I | GTCTC | 2 cut(s) | 329, 728 |
| AoxI | GGCC | 1 cut(s) | 876 |
| ApeKI | GCWGC | 1 cut(s) | 365 |
| ApoI | RAATTY | 2 cut(s) | 82, 301 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 843, 875 |
| AseI | ATTAAT | 2 cut(s) | 351, 626 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 627, 926 |
| AspS9I | GGNCC | 1 cut(s) | 192 |
| AsuHPI | GGTGA | 3 cut(s) | 533, 570, 743 |
| AvaII | GGWCC | 1 cut(s) | 192 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BanI | GGYRCC | 1 cut(s) | 457 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 382, 414 |
| BbvI | GCAGC | 1 cut(s) | 352 |
| BccI | CCATC | 1 cut(s) | 314 |
| BceAI | ACGGC | 1 cut(s) | 753 |
| BciT130I | CCWGG | 1 cut(s) | 255 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcoDI | GTCTC | 2 cut(s) | 329, 728 |
| BfaI | CTAG | 2 cut(s) | 273, 931 |
| BisI | GCNGC | 1 cut(s) | 366 |
| BlsI | GCNGC | 1 cut(s) | 367 |
| Bme1390I | CCNGG | 1 cut(s) | 255 |
| Bme18I | GGWCC | 1 cut(s) | 192 |
| BmgBI | CACGTC | 1 cut(s) | 717 |
| BmgT120I | GGNCC | 1 cut(s) | 192 |
| BmiI | GGNNCC | 3 cut(s) | 193, 270, 459 |
| BmrFI | CCNGG | 1 cut(s) | 255 |
| BpmI | CTGGAG | 1 cut(s) | 399 |
| BpuEI | CTTGAG | 2 cut(s) | 239, 447 |
| BsaJI | CCNNGG | 1 cut(s) | 905 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 260, 690 |
| Bse1I | ACTGG | 2 cut(s) | 382, 757 |
| BseBI | CCWGG | 1 cut(s) | 255 |
| BseDI | CCNNGG | 1 cut(s) | 905 |
| BseGI | GGATG | 3 cut(s) | 364, 538, 845 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 260, 690 |
| BseMII | CTCAG | 1 cut(s) | 324 |
| BseNI | ACTGG | 2 cut(s) | 382, 757 |
| BseRI | GAGGAG | 1 cut(s) | 794 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 352 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| BshFI | GGCC | 1 cut(s) | 878 |
| BshNI | GGYRCC | 1 cut(s) | 457 |
| BsiSI | CCGG | 1 cut(s) | 581 |
| BslFI | GGGAC | 1 cut(s) | 864 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 260, 690 |
| BsmAI | GTCTC | 2 cut(s) | 329, 728 |
| BsmBI | CGTCTC | 1 cut(s) | 728 |
| BsmFI | GGGAC | 1 cut(s) | 864 |
| BsnI | GGCC | 1 cut(s) | 878 |
| Bsp1286I | GDGCHC | 1 cut(s) | 16 |
| Bsp143I | GATC | 2 cut(s) | 19, 55 |
| Bsp19I | CCATGG | 1 cut(s) | 905 |
| BspACI | CCGC | 1 cut(s) | 847 |
| BspANI | GGCC | 1 cut(s) | 878 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspLI | GGNNCC | 3 cut(s) | 193, 270, 459 |
| BspT107I | GGYRCC | 1 cut(s) | 457 |
| BsrI | ACTGG | 2 cut(s) | 382, 757 |
| BssECI | CCNNGG | 1 cut(s) | 905 |
| BssMI | GATC | 2 cut(s) | 19, 55 |
| BssT1I | CCWWGG | 1 cut(s) | 905 |
| Bst2UI | CCWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 1 cut(s) | 112 |
| Bst6I | CTCTTC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 244 |
| BstDEI | CTNAG | 1 cut(s) | 333 |
| BstDSI | CCRYGG | 1 cut(s) | 905 |
| BstF5I | GGATG | 3 cut(s) | 364, 538, 845 |
| BstKTI | GATC | 2 cut(s) | 22, 58 |
| BstMAI | GTCTC | 2 cut(s) | 329, 728 |
| BstMBI | GATC | 2 cut(s) | 19, 55 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 853 |
| BstNI | CCWGG | 1 cut(s) | 255 |
| BstNSI | RCATGY | 2 cut(s) | 246, 485 |
| BstSCI | CCNGG | 1 cut(s) | 253 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 1 cut(s) | 352 |
| BsuRI | GGCC | 1 cut(s) | 878 |
| BtgI | CCRYGG | 1 cut(s) | 905 |
| BtrI | CACGTC | 1 cut(s) | 717 |
| BtsCI | GGATG | 3 cut(s) | 364, 538, 845 |
| BtsI | GCAGTG | 2 cut(s) | 40, 210 |
| BtsIMutI | CAGTG | 3 cut(s) | 40, 210, 750 |
| Cac8I | GCNNGC | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 1 cut(s) | 192 |
| Csp6I | GTAC | 1 cut(s) | 899 |
| CviAII | CATG | 7 cut(s) | 17, 243, 482, 671, 690, 758, 906 |
| CviJI | RGCY | 9 cut(s) | 253, 317, 365, 516, 658, 700, 856, 878, 893 |
| CviKI_1 | RGCY | 9 cut(s) | 253, 317, 365, 516, 658, 700, 856, 878, 893 |
| CviQI | GTAC | 1 cut(s) | 899 |
| DdeI | CTNAG | 1 cut(s) | 333 |
| DpnI | GATC | 2 cut(s) | 21, 57 |
| DpnII | GATC | 2 cut(s) | 19, 55 |
| Eam1104I | CTCTTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 1 cut(s) | 126 |
| Eco130I | CCWWGG | 1 cut(s) | 905 |
| Eco47I | GGWCC | 1 cut(s) | 192 |
| EcoRI | GAATTC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 1 cut(s) | 253 |
| EcoT14I | CCWWGG | 1 cut(s) | 905 |
| ErhI | CCWWGG | 1 cut(s) | 905 |
| Esp3I | CGTCTC | 1 cut(s) | 728 |
| FaeI | CATG | 7 cut(s) | 20, 246, 485, 674, 693, 761, 909 |
| FaiI | YATR | 8 cut(s) | 18, 244, 483, 672, 691, 759, 776, 907 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 783, 815 |
| FaqI | GGGAC | 1 cut(s) | 864 |
| FatI | CATG | 7 cut(s) | 16, 242, 481, 670, 689, 757, 905 |
| FauI | CCCGC | 1 cut(s) | 840 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 366 |
| FokI | GGATG | 3 cut(s) | 371, 545, 852 |
| Fsp4HI | GCNGC | 1 cut(s) | 366 |
| FspBI | CTAG | 2 cut(s) | 273, 931 |
| GluI | GCNGC | 1 cut(s) | 366 |
| GsuI | CTGGAG | 1 cut(s) | 399 |
| HaeIII | GGCC | 1 cut(s) | 878 |
| HapII | CCGG | 1 cut(s) | 581 |
| Hin1II | CATG | 7 cut(s) | 20, 246, 485, 674, 693, 761, 909 |
| HincII | GTYRAC | 1 cut(s) | 409 |
| HindII | GTYRAC | 1 cut(s) | 409 |
| HinfI | GANTC | 5 cut(s) | 5, 125, 337, 443, 476 |
| HpaII | CCGG | 1 cut(s) | 581 |
| HphI | GGTGA | 3 cut(s) | 533, 570, 743 |
| Hpy166II | GTNNAC | 1 cut(s) | 409 |
| Hpy188I | TCNGA | 4 cut(s) | 130, 334, 358, 571 |
| Hpy188III | TCNNGA | 1 cut(s) | 78 |
| Hpy8I | GTNNAC | 1 cut(s) | 409 |
| HpyAV | CCTTC | 3 cut(s) | 206, 397, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 1 cut(s) | 716 |
| HpyCH4V | TGCA | 5 cut(s) | 25, 50, 602, 668, 864 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 853 |
| HpyF3I | CTNAG | 1 cut(s) | 333 |
| HpySE526I | ACGT | 1 cut(s) | 716 |
| Hsp92II | CATG | 7 cut(s) | 20, 246, 485, 674, 693, 761, 909 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 2 cut(s) | 19, 55 |
| Lsp1109I | GCAGC | 1 cut(s) | 352 |
| MaeI | CTAG | 2 cut(s) | 273, 931 |
| MaeII | ACGT | 1 cut(s) | 716 |
| MaeIII | GTNAC | 3 cut(s) | 373, 397, 748 |
| MalI | GATC | 2 cut(s) | 21, 57 |
| MboI | GATC | 2 cut(s) | 19, 55 |
| MboII | GAAGA | 6 cut(s) | 143, 173, 402, 452, 463, 803 |
| MhlI | GDGCHC | 1 cut(s) | 16 |
| MluCI | AATT | 9 cut(s) | 82, 185, 301, 310, 352, 413, 591, 623, 627 |
| MlyI | GAGTC | 1 cut(s) | 331 |
| MnlI | CCTC | 8 cut(s) | 31, 127, 232, 355, 471, 489, 772, 830 |
| MroXI | GAANNNNTTC | 2 cut(s) | 627, 926 |
| MseI | TTAA | 5 cut(s) | 351, 563, 626, 696, 872 |
| MspI | CCGG | 1 cut(s) | 581 |
| MspR9I | CCNGG | 1 cut(s) | 255 |
| MvaI | CCWGG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 853 |
| NcoI | CCATGG | 1 cut(s) | 905 |
| NdeII | GATC | 2 cut(s) | 19, 55 |
| NlaIII | CATG | 7 cut(s) | 20, 246, 485, 674, 693, 761, 909 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 270, 459 |
| NmuCI | GTSAC | 1 cut(s) | 748 |
| NspI | RCATGY | 2 cut(s) | 246, 485 |
| PaeI | GCATGC | 1 cut(s) | 246 |
| PciI | ACATGT | 1 cut(s) | 481 |
| PdmI | GAANNNNTTC | 2 cut(s) | 627, 926 |
| PfeI | GAWTC | 4 cut(s) | 5, 125, 443, 476 |
| PkrI | GCNGC | 1 cut(s) | 367 |
| PleI | GAGTC | 1 cut(s) | 331 |
| PpsI | GAGTC | 1 cut(s) | 331 |
| PscI | ACATGT | 1 cut(s) | 481 |
| PshBI | ATTAAT | 2 cut(s) | 351, 626 |
| Psp6I | CCWGG | 1 cut(s) | 253 |
| PspGI | CCWGG | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 270, 459 |
| PspPI | GGNCC | 1 cut(s) | 192 |
| RsaI | GTAC | 1 cut(s) | 900 |
| RsaNI | GTAC | 1 cut(s) | 899 |
| SaqAI | TTAA | 5 cut(s) | 351, 563, 626, 696, 872 |
| SatI | GCNGC | 1 cut(s) | 366 |
| Sau3AI | GATC | 2 cut(s) | 19, 55 |
| Sau96I | GGNCC | 1 cut(s) | 192 |
| SchI | GAGTC | 1 cut(s) | 331 |
| ScrFI | CCNGG | 1 cut(s) | 255 |
| SduI | GDGCHC | 1 cut(s) | 16 |
| SetI | ASST | 9 cut(s) | 31, 42, 408, 432, 459, 500, 660, 702, 719 |
| SinI | GGWCC | 1 cut(s) | 192 |
| SmlI | CTYRAG | 2 cut(s) | 218, 462 |
| SmoI | CTYRAG | 2 cut(s) | 218, 462 |
| SphI | GCATGC | 1 cut(s) | 246 |
| Sse9I | AATT | 9 cut(s) | 82, 185, 301, 310, 352, 413, 591, 623, 627 |
| SsiI | CCGC | 1 cut(s) | 847 |
| SspMI | CTAG | 2 cut(s) | 273, 931 |
| StyD4I | CCNGG | 1 cut(s) | 253 |
| StyI | CCWWGG | 1 cut(s) | 905 |
| TaaI | ACNGT | 1 cut(s) | 112 |
| TaiI | ACGT | 1 cut(s) | 719 |
| TaqI | TCGA | 1 cut(s) | 422 |
| TasI | AATT | 9 cut(s) | 82, 185, 301, 310, 352, 413, 591, 623, 627 |
| TatI | WGTACW | 1 cut(s) | 898 |
| TfiI | GAWTC | 4 cut(s) | 5, 125, 443, 476 |
| Tru1I | TTAA | 5 cut(s) | 351, 563, 626, 696, 872 |
| Tru9I | TTAA | 5 cut(s) | 351, 563, 626, 696, 872 |
| TscAI | CASTG | 3 cut(s) | 40, 210, 757 |
| TseFI | GTSAC | 1 cut(s) | 748 |
| TseI | GCWGC | 1 cut(s) | 365 |
| Tsp45I | GTSAC | 1 cut(s) | 748 |
| TspDTI | ATGAA | 3 cut(s) | 174, 620, 804 |
| TspGWI | ACGGA | 1 cut(s) | 635 |
| TspRI | CASTG | 3 cut(s) | 40, 210, 757 |
| VpaK11BI | GGWCC | 1 cut(s) | 192 |
| VspI | ATTAAT | 2 cut(s) | 351, 626 |
| XapI | RAATTY | 2 cut(s) | 82, 301 |
| XceI | RCATGY | 2 cut(s) | 246, 485 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 202, 257 |
| XmnI | GAANNNNTTC | 2 cut(s) | 627, 926 |
| XspI | CTAG | 2 cut(s) | 273, 931 |