The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G34200 AT2G34200 |
| fragaria_vesca | FvH4_3g07460 |
| malus_domestica | MD10G1277000.v1.1 |
| prunus_persica | Prupe.4G064900_v2.0.a1 Prupe.4G064900_v2.0.a1 |
| pyrus_communis | pycom05g27540 pycom10g23130 |
| rosa_chinensis | RchiOBHm_Chr5g0011391 |
| rosa_laevigata | RLG00000031829 |
| rosa_multiflora | Rmu_sc0009975.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00065060 |
| rosa_rugosa | Rorug04G0456800 |
| rosa_samantha | Rh5AG088500 Rh5BG083600 Rh5CG096900 Rh5DG083500 |
| rosa_wichuraiana | Rw5G007680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 225 |
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccII | CGCG | 1 cut(s) | 361 |
| AciI | CCGC | 3 cut(s) | 125, 521, 832 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 5 cut(s) | 61, 82, 292, 708, 971 |
| AcuI | CTGAAG | 2 cut(s) | 168, 690 |
| AfaI | GTAC | 2 cut(s) | 247, 367 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 452 |
| AflIII | ACRYGT | 1 cut(s) | 466 |
| AgsI | TTSAA | 3 cut(s) | 26, 157, 927 |
| AhlI | ACTAGT | 1 cut(s) | 248 |
| AjnI | CCWGG | 1 cut(s) | 867 |
| AluBI | AGCT | 3 cut(s) | 277, 674, 685 |
| AluI | AGCT | 3 cut(s) | 277, 674, 685 |
| Alw26I | GTCTC | 2 cut(s) | 208, 320 |
| AoxI | GGCC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 1 cut(s) | 872 |
| ApoI | RAATTY | 5 cut(s) | 61, 82, 292, 708, 971 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 828, 860 |
| AseI | ATTAAT | 1 cut(s) | 474 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 784 |
| AspLEI | GCGC | 1 cut(s) | 890 |
| AsuHPI | GGTGA | 5 cut(s) | 182, 209, 362, 410, 518 |
| AsuII | TTCGAA | 1 cut(s) | 296 |
| AxyI | CCTNAGG | 1 cut(s) | 447 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BbsI | GAAGAC | 1 cut(s) | 936 |
| BbvI | GCAGC | 1 cut(s) | 859 |
| BccI | CCATC | 2 cut(s) | 305, 371 |
| BciT130I | CCWGG | 1 cut(s) | 869 |
| BclI | TGATCA | 2 cut(s) | 55, 556 |
| BcoDI | GTCTC | 2 cut(s) | 208, 320 |
| BcuI | ACTAGT | 1 cut(s) | 248 |
| BfaI | CTAG | 4 cut(s) | 249, 278, 585, 603 |
| BisI | GCNGC | 2 cut(s) | 126, 873 |
| BlsI | GCNGC | 2 cut(s) | 127, 874 |
| Bme1390I | CCNGG | 1 cut(s) | 869 |
| BmiI | GGNNCC | 1 cut(s) | 444 |
| BmrFI | CCNGG | 1 cut(s) | 869 |
| BmrI | ACTGGG | 1 cut(s) | 416 |
| BmuI | ACTGGG | 1 cut(s) | 416 |
| BpiI | GAAGAC | 1 cut(s) | 936 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| Bpu14I | TTCGAA | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 1 cut(s) | 89 |
| BsaAI | YACGTR | 1 cut(s) | 245 |
| BsaBI | GATNNNNATC | 1 cut(s) | 476 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 950, 980 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 452 |
| Bse1I | ACTGG | 3 cut(s) | 373, 411, 742 |
| Bse21I | CCTNAGG | 1 cut(s) | 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 476 |
| BseBI | CCWGG | 1 cut(s) | 869 |
| BseGI | GGATG | 2 cut(s) | 10, 830 |
| BseJI | GATNNNNATC | 1 cut(s) | 476 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BseMII | CTCAG | 2 cut(s) | 315, 438 |
| BseNI | ACTGG | 3 cut(s) | 373, 411, 742 |
| BseRI | GAGGAG | 1 cut(s) | 779 |
| BseXI | GCAGC | 1 cut(s) | 859 |
| Bsh1236I | CGCG | 1 cut(s) | 361 |
| BshFI | GGCC | 1 cut(s) | 128 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiSI | CCGG | 1 cut(s) | 566 |
| BslFI | GGGAC | 1 cut(s) | 849 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BsmAI | GTCTC | 2 cut(s) | 208, 320 |
| BsmFI | GGGAC | 1 cut(s) | 849 |
| BsmI | GAATGC | 1 cut(s) | 922 |
| BsnI | GGCC | 1 cut(s) | 128 |
| Bsp119I | TTCGAA | 1 cut(s) | 296 |
| Bsp143I | GATC | 2 cut(s) | 55, 556 |
| BspACI | CCGC | 3 cut(s) | 125, 521, 832 |
| BspANI | GGCC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 2 cut(s) | 316, 439 |
| BspFNI | CGCG | 1 cut(s) | 361 |
| BspLI | GGNNCC | 1 cut(s) | 444 |
| BspT104I | TTCGAA | 1 cut(s) | 296 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BsrI | ACTGG | 3 cut(s) | 373, 411, 742 |
| BssMI | GATC | 2 cut(s) | 55, 556 |
| Bst2UI | CCWGG | 1 cut(s) | 869 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstBAI | YACGTR | 1 cut(s) | 245 |
| BstBI | TTCGAA | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 1 cut(s) | 865 |
| BstDEI | CTNAG | 2 cut(s) | 324, 447 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 2 cut(s) | 10, 830 |
| BstFNI | CGCG | 1 cut(s) | 361 |
| BstHHI | GCGC | 1 cut(s) | 890 |
| BstKTI | GATC | 2 cut(s) | 58, 559 |
| BstMAI | GTCTC | 2 cut(s) | 208, 320 |
| BstMBI | GATC | 2 cut(s) | 55, 556 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 665, 838, 869 |
| BstNI | CCWGG | 1 cut(s) | 869 |
| BstNSI | RCATGY | 4 cut(s) | 237, 470, 659, 867 |
| BstSCI | CCNGG | 1 cut(s) | 867 |
| BstUI | CGCG | 1 cut(s) | 361 |
| BstV1I | GCAGC | 1 cut(s) | 859 |
| BstV2I | GAAGAC | 1 cut(s) | 936 |
| Bsu36I | CCTNAGG | 1 cut(s) | 447 |
| BsuRI | GGCC | 1 cut(s) | 128 |
| BtsCI | GGATG | 2 cut(s) | 10, 830 |
| BtsI | GCAGTG | 2 cut(s) | 40, 129 |
| BtsIMutI | CAGTG | 2 cut(s) | 40, 129 |
| Cac8I | GCNNGC | 1 cut(s) | 865 |
| CfoI | GCGC | 1 cut(s) | 890 |
| CseI | GACGC | 1 cut(s) | 928 |
| Csp6I | GTAC | 2 cut(s) | 246, 366 |
| CviAII | CATG | 6 cut(s) | 17, 234, 269, 467, 656, 864 |
| CviQI | GTAC | 2 cut(s) | 246, 366 |
| DdeI | CTNAG | 2 cut(s) | 324, 447 |
| DpnI | GATC | 2 cut(s) | 57, 558 |
| DpnII | GATC | 2 cut(s) | 55, 556 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| EciI | GGCGGA | 1 cut(s) | 536 |
| Eco57I | CTGAAG | 2 cut(s) | 168, 690 |
| Eco81I | CCTNAGG | 1 cut(s) | 447 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EcoRI | GAATTC | 3 cut(s) | 61, 82, 292 |
| EcoRII | CCWGG | 1 cut(s) | 867 |
| FaeI | CATG | 6 cut(s) | 20, 237, 272, 470, 659, 867 |
| FaqI | GGGAC | 1 cut(s) | 849 |
| FatI | CATG | 6 cut(s) | 16, 233, 268, 466, 655, 863 |
| FauI | CCCGC | 1 cut(s) | 825 |
| FbaI | TGATCA | 2 cut(s) | 55, 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 126, 873 |
| FokI | GGATG | 2 cut(s) | 17, 837 |
| Fsp4HI | GCNGC | 2 cut(s) | 126, 873 |
| FspBI | CTAG | 4 cut(s) | 249, 278, 585, 603 |
| GlaI | GCGC | 1 cut(s) | 889 |
| GluI | GCNGC | 2 cut(s) | 126, 873 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeIII | GGCC | 1 cut(s) | 128 |
| HapII | CCGG | 1 cut(s) | 566 |
| HgaI | GACGC | 1 cut(s) | 928 |
| HhaI | GCGC | 1 cut(s) | 890 |
| Hin1II | CATG | 6 cut(s) | 20, 237, 272, 470, 659, 867 |
| Hin6I | GCGC | 1 cut(s) | 888 |
| HinP1I | GCGC | 1 cut(s) | 888 |
| HindIII | AAGCTT | 1 cut(s) | 672 |
| HinfI | GANTC | 6 cut(s) | 107, 265, 428, 461, 581, 900 |
| HpaII | CCGG | 1 cut(s) | 566 |
| HphI | GGTGA | 5 cut(s) | 182, 209, 362, 410, 518 |
| Hpy166II | GTNNAC | 1 cut(s) | 958 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 141, 325, 556, 811, 970 |
| Hpy8I | GTNNAC | 1 cut(s) | 958 |
| HpyAV | CCTTC | 3 cut(s) | 151, 197, 433 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4IV | ACGT | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 7 cut(s) | 8, 653, 725, 849, 875, 907, 979 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 665, 838, 869 |
| HpyF3I | CTNAG | 2 cut(s) | 324, 447 |
| HpySE526I | ACGT | 1 cut(s) | 244 |
| Hsp92II | CATG | 6 cut(s) | 20, 237, 272, 470, 659, 867 |
| HspAI | GCGC | 1 cut(s) | 888 |
| Ksp22I | TGATCA | 2 cut(s) | 55, 556 |
| Kzo9I | GATC | 2 cut(s) | 55, 556 |
| Lsp1109I | GCAGC | 1 cut(s) | 859 |
| MaeI | CTAG | 4 cut(s) | 249, 278, 585, 603 |
| MaeII | ACGT | 1 cut(s) | 244 |
| MaeIII | GTNAC | 3 cut(s) | 12, 598, 733 |
| MalI | GATC | 2 cut(s) | 57, 558 |
| MboI | GATC | 2 cut(s) | 55, 556 |
| MboII | GAAGA | 5 cut(s) | 161, 212, 393, 792, 936 |
| MlyI | GAGTC | 3 cut(s) | 116, 274, 437 |
| MmeI | TCCRAC | 1 cut(s) | 802 |
| MnlI | CCTC | 9 cut(s) | 115, 223, 250, 346, 442, 450, 511, 757, 807 |
| MroXI | GAANNNNTTC | 1 cut(s) | 784 |
| MseI | TTAA | 5 cut(s) | 474, 548, 611, 681, 857 |
| MspI | CCGG | 1 cut(s) | 566 |
| MspR9I | CCNGG | 1 cut(s) | 869 |
| Mva1269I | GAATGC | 1 cut(s) | 922 |
| MvaI | CCWGG | 1 cut(s) | 869 |
| MvnI | CGCG | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 665, 838, 869 |
| NdeII | GATC | 2 cut(s) | 55, 556 |
| NlaIII | CATG | 6 cut(s) | 20, 237, 272, 470, 659, 867 |
| NlaIV | GGNNCC | 1 cut(s) | 444 |
| NmuCI | GTSAC | 2 cut(s) | 12, 598 |
| NspI | RCATGY | 4 cut(s) | 237, 470, 659, 867 |
| NspV | TTCGAA | 1 cut(s) | 296 |
| PaeI | GCATGC | 1 cut(s) | 867 |
| PciI | ACATGT | 1 cut(s) | 466 |
| PctI | GAATGC | 1 cut(s) | 922 |
| PdmI | GAANNNNTTC | 1 cut(s) | 784 |
| PfeI | GAWTC | 3 cut(s) | 461, 581, 900 |
| PkrI | GCNGC | 2 cut(s) | 127, 874 |
| PleI | GAGTC | 3 cut(s) | 115, 273, 436 |
| PpsI | GAGTC | 3 cut(s) | 115, 273, 436 |
| Ppu21I | YACGTR | 1 cut(s) | 245 |
| PscI | ACATGT | 1 cut(s) | 466 |
| PshBI | ATTAAT | 1 cut(s) | 474 |
| PsiI | TTATAA | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 867 |
| PspGI | CCWGG | 1 cut(s) | 867 |
| PspN4I | GGNNCC | 1 cut(s) | 444 |
| RsaI | GTAC | 2 cut(s) | 247, 367 |
| RsaNI | GTAC | 2 cut(s) | 246, 366 |
| SaqAI | TTAA | 5 cut(s) | 474, 548, 611, 681, 857 |
| SatI | GCNGC | 2 cut(s) | 126, 873 |
| Sau3AI | GATC | 2 cut(s) | 55, 556 |
| SchI | GAGTC | 3 cut(s) | 116, 274, 437 |
| ScrFI | CCNGG | 1 cut(s) | 869 |
| SetI | ASST | 9 cut(s) | 31, 199, 247, 261, 279, 423, 444, 676, 687 |
| SfuI | TTCGAA | 1 cut(s) | 296 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SpeI | ACTAGT | 1 cut(s) | 248 |
| SphI | GCATGC | 1 cut(s) | 867 |
| SsiI | CCGC | 3 cut(s) | 125, 521, 832 |
| SspMI | CTAG | 4 cut(s) | 249, 278, 585, 603 |
| StyD4I | CCNGG | 1 cut(s) | 867 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaiI | ACGT | 1 cut(s) | 247 |
| TaqI | TCGA | 4 cut(s) | 120, 263, 296, 413 |
| TauI | GCSGC | 1 cut(s) | 128 |
| TfiI | GAWTC | 3 cut(s) | 461, 581, 900 |
| Tru1I | TTAA | 5 cut(s) | 474, 548, 611, 681, 857 |
| Tru9I | TTAA | 5 cut(s) | 474, 548, 611, 681, 857 |
| TscAI | CASTG | 2 cut(s) | 40, 136 |
| TseFI | GTSAC | 2 cut(s) | 12, 598 |
| TseI | GCWGC | 1 cut(s) | 872 |
| Tsp45I | GTSAC | 2 cut(s) | 12, 598 |
| TspDTI | ATGAA | 4 cut(s) | 417, 452, 605, 654 |
| TspRI | CASTG | 2 cut(s) | 40, 136 |
| VspI | ATTAAT | 1 cut(s) | 474 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 5 cut(s) | 61, 82, 292, 708, 971 |
| XceI | RCATGY | 4 cut(s) | 237, 470, 659, 867 |
| XmnI | GAANNNNTTC | 1 cut(s) | 784 |
| XspI | CTAG | 4 cut(s) | 249, 278, 585, 603 |