AT2G34470

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012327
Physical Location & Seq
Reverse (-)
14530735 .. 14532505
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34470.1

Sequence Viewer

Length: 828 bp
ATGGCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTACCATAGCCACGATGGACTCGCACCTCACTCACACGAACCCATCTACTCTCCTGGCTACTTCAGTCGCCGAGCTCCTCCGCTTCACGACCGTAACTTCTCTGAGAGAGCTTTTACCGTCGGTATTGGCGGTCCCGTTGGCACTGGGAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAATGGGGCTCTTCCTGAGGAAAGGATTAGAGCTGTTGAAACAGGTGGATGTCCACACGCTGCTATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTATCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGATAATTTAGCTGCTAATTTCAGTAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGATAAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGGTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTCATGGAAAGGGATTCACTACGCATGCGTGATGGAGGGCCATTTGTCTTTGCTCAGGTGAAGCATGGGCTTGGAGTCGAGGAAATCGTGAACCATGTCATGCACTCATGGGAACATGCGACCGGGAAGAAGCGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0065007 GO:0065009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
cobW

Protein Analysis

275

Amino Acids

30.08

Weight (kDa)

6.03

Isoelectric Point (pI)

23.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cobW PF02492 75 - 245 2.5e-35 CobW/HypB/UreG, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34470 AT2G34470
fragaria_vesca FvH4_3g05780
malus_domestica MD05G1285700.v1.1 MD10G1263700.v1.1
prunus_persica Prupe.4G079000_v2.0.a1
pyrus_communis pycom10g21990
rosa_chinensis RchiOBHm_Chr5g0013721 RchiOBHm_Chr5g0013731 RchiOBHm_Chr5g0013741 RchiOBHm_Chr5g0013751
rosa_laevigata RLG00000032043
rosa_multiflora Rmu_ssc0000256.1_g000001
rosa_roxburghii Rroxscaffold_1G00062890
rosa_rugosa Rorug05G0012600
rosa_samantha Rh5AG106900 Rh5BG103000 Rh5DG101700
rosa_wichuraiana Rw5G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 686
AciI CCGC 4 cut(s) 66, 188, 237, 609
AcuI CTGAAG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 2 cut(s) 401, 484
AjnI CCWGG 2 cut(s) 160, 613
AluBI AGCT 7 cut(s) 182, 218, 395, 527, 551, 629, 668
AluI AGCT 7 cut(s) 182, 218, 395, 527, 551, 629, 668
Alw21I GWGCWC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 668
AoxI GGCC 2 cut(s) 610, 725
ApeKI GCWGC 5 cut(s) 311, 422, 527, 662, 665
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 4 cut(s) 239, 455, 611, 725
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 5 cut(s) 359, 370, 599, 652, 757
AvaII GGWCC 2 cut(s) 239, 455
AxyI CCTNAGG 1 cut(s) 378
BanII GRGCYC 2 cut(s) 184, 373
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 5 cut(s) 298, 409, 514, 674, 677
BccI CCATC 5 cut(s) 27, 116, 158, 338, 713
BceAI ACGGC 2 cut(s) 79, 276
BciT130I CCWGG 2 cut(s) 162, 615
BcnI CCSGG 1 cut(s) 811
BfaI CTAG 1 cut(s) 548
BfoI RGCGCY 1 cut(s) 823
BisI GCNGC 6 cut(s) 312, 423, 528, 610, 663, 666
BlsI GCNGC 6 cut(s) 313, 424, 529, 611, 664, 667
Bme1390I CCNGG 3 cut(s) 162, 615, 811
Bme18I GGWCC 2 cut(s) 239, 455
BmgT120I GGNCC 4 cut(s) 239, 455, 611, 725
BmiI GGNNCC 2 cut(s) 241, 456
BmrFI CCNGG 3 cut(s) 162, 615, 811
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 14, 258
BmuI ACTGGG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 3 cut(s) 310, 482, 609
BpuMI CCSGG 1 cut(s) 811
Bsa29I ATCGAT 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 509
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 2 cut(s) 256, 823
Bse21I CCTNAGG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 162, 615
BseCI ATCGAT 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 349, 416
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMII CTCAG 3 cut(s) 201, 369, 755
BseNI ACTGG 2 cut(s) 256, 823
BseRI GAGGAG 2 cut(s) 174, 479
BseXI GCAGC 5 cut(s) 298, 409, 514, 674, 677
Bsh1285I CGRYCG 2 cut(s) 199, 810
BshFI GGCC 2 cut(s) 612, 727
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 2 cut(s) 199, 810
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 510, 810
BslFI GGGAC 2 cut(s) 225, 308
BslI CCNNNNNNNGG 1 cut(s) 605
BsmFI GGGAC 2 cut(s) 225, 308
BsnI GGCC 2 cut(s) 612, 727
Bsp1286I GDGCHC 2 cut(s) 184, 373
Bsp143I GATC 2 cut(s) 34, 631
BspACI CCGC 4 cut(s) 66, 188, 237, 609
BspANI GGCC 2 cut(s) 612, 727
BspCNI CTCAG 3 cut(s) 202, 370, 754
BspDI ATCGAT 1 cut(s) 573
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 241, 456
BspQI GCTCTTC 1 cut(s) 378
BsrI ACTGG 2 cut(s) 256, 823
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 2 cut(s) 34, 631
BssNI GRCGYC 1 cut(s) 80
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 162, 615
Bst4CI ACNGT 2 cut(s) 200, 226
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 273, 713
BstDEI CTNAG 3 cut(s) 210, 378, 741
BstF5I GGATG 2 cut(s) 349, 416
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 2 cut(s) 37, 634
BstMBI GATC 2 cut(s) 34, 631
BstMCI CGRYCG 2 cut(s) 199, 810
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 2 cut(s) 162, 615
BstNSI RCATGY 2 cut(s) 715, 806
BstSCI CCNGG 3 cut(s) 160, 613, 809
BstV1I GCAGC 5 cut(s) 298, 409, 514, 674, 677
Bsu15I ATCGAT 1 cut(s) 573
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 612, 727
BsuTUI ATCGAT 1 cut(s) 573
BtsCI GGATG 2 cut(s) 349, 416
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 273, 713
CaiI CAGNNNCTG 1 cut(s) 668
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 4 cut(s) 239, 455, 611, 725
ClaI ATCGAT 1 cut(s) 573
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 109
CviAII CATG 9 cut(s) 38, 44, 691, 712, 752, 782, 787, 795, 803
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 210, 378, 741
DpnI GATC 2 cut(s) 36, 633
DpnII GATC 2 cut(s) 34, 631
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 184, 373
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 239, 455
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 160, 613
EcoRV GATATC 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 184, 373
FaeI CATG 9 cut(s) 41, 47, 694, 715, 755, 785, 790, 798, 806
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 2 cut(s) 225, 308
FatI CATG 9 cut(s) 37, 43, 690, 711, 751, 781, 786, 794, 802
Fnu4HI GCNGC 6 cut(s) 312, 423, 528, 610, 663, 666
FokI GGATG 2 cut(s) 356, 423
FriOI GRGCYC 2 cut(s) 184, 373
Fsp4HI GCNGC 6 cut(s) 312, 423, 528, 610, 663, 666
FspBI CTAG 1 cut(s) 548
GlaI GCGC 1 cut(s) 821
GluI GCNGC 6 cut(s) 312, 423, 528, 610, 663, 666
HaeII RGCGCY 1 cut(s) 823
HaeIII GGCC 2 cut(s) 612, 727
HapII CCGG 2 cut(s) 510, 810
HgaI GACGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 9 cut(s) 41, 47, 694, 715, 755, 785, 790, 798, 806
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HinfI GANTC 6 cut(s) 126, 285, 506, 618, 701, 762
HpaII CCGG 2 cut(s) 510, 810
HphI GGTGA 5 cut(s) 359, 370, 599, 652, 757
Hpy166II GTNNAC 3 cut(s) 109, 416, 778
Hpy188I TCNGA 2 cut(s) 61, 211
Hpy188III TCNNGA 8 cut(s) 32, 38, 194, 289, 334, 377, 461, 775
Hpy8I GTNNAC 3 cut(s) 109, 416, 778
Hpy99I CGWCG 2 cut(s) 85, 230
HpyAV CCTTC 4 cut(s) 65, 70, 88, 97
HpyCH4III ACNGT 2 cut(s) 200, 226
HpyCH4V TGCA 2 cut(s) 662, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 3 cut(s) 210, 378, 741
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 9 cut(s) 41, 47, 694, 715, 755, 785, 790, 798, 806
HspAI GCGC 1 cut(s) 820
Kzo9I GATC 2 cut(s) 34, 631
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 298, 409, 514, 674, 677
LweI GCATC 2 cut(s) 14, 258
MaeI CTAG 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 200, 316
MalI GATC 2 cut(s) 36, 633
MboI GATC 2 cut(s) 34, 631
MboII GAAGA 5 cut(s) 365, 373, 446, 626, 826
MhlI GDGCHC 2 cut(s) 184, 373
MluCI AATT 3 cut(s) 448, 520, 532
MlyI GAGTC 2 cut(s) 120, 771
MnlI CCTC 9 cut(s) 144, 195, 285, 334, 373, 457, 468, 716, 760
MslI CAYNNNNRTG 2 cut(s) 36, 42
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 2 cut(s) 510, 810
MspR9I CCNGG 3 cut(s) 162, 615, 811
MvaI CCWGG 2 cut(s) 162, 615
MwoI GCNNNNNNNGC 1 cut(s) 674
NciI CCSGG 1 cut(s) 811
NdeII GATC 2 cut(s) 34, 631
NlaIII CATG 9 cut(s) 41, 47, 694, 715, 755, 785, 790, 798, 806
NlaIV GGNNCC 2 cut(s) 241, 456
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 2 cut(s) 715, 806
PaeI GCATGC 1 cut(s) 715
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PfeI GAWTC 4 cut(s) 285, 506, 618, 701
PkrI GCNGC 6 cut(s) 313, 424, 529, 611, 664, 667
PleI GAGTC 2 cut(s) 120, 770
PpsI GAGTC 2 cut(s) 120, 770
PpuMI RGGWCCY 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 160, 613
PspGI CCWGG 2 cut(s) 160, 613
PspN4I GGNNCC 2 cut(s) 241, 456
PspPI GGNCC 4 cut(s) 239, 455, 611, 725
PspPPI RGGWCCY 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 2 cut(s) 36, 42
SacI GAGCTC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 6 cut(s) 312, 423, 528, 610, 663, 666
Sau3AI GATC 2 cut(s) 34, 631
Sau96I GGNCC 4 cut(s) 239, 455, 611, 725
SchI GAGTC 2 cut(s) 120, 771
ScrFI CCNGG 3 cut(s) 162, 615, 811
SduI GDGCHC 2 cut(s) 184, 373
SfaNI GCATC 2 cut(s) 14, 258
SinI GGWCC 2 cut(s) 239, 455
SmiMI CAYNNNNRTG 2 cut(s) 36, 42
SmlI CTYRAG 3 cut(s) 289, 461, 624
SmoI CTYRAG 3 cut(s) 289, 461, 624
SphI GCATGC 1 cut(s) 715
Sse9I AATT 3 cut(s) 448, 520, 532
SsiI CCGC 4 cut(s) 66, 188, 237, 609
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 3 cut(s) 160, 613, 809
TaaI ACNGT 2 cut(s) 200, 226
TaqI TCGA 2 cut(s) 573, 765
TaqII GACCGA 1 cut(s) 676
TasI AATT 3 cut(s) 448, 520, 532
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 4 cut(s) 285, 506, 618, 701
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 5 cut(s) 311, 422, 527, 662, 665
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 239, 455
XceI RCATGY 2 cut(s) 715, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.