AT2G34510

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010097
Physical Location & Seq
Reverse (-)
14543894 .. 14546986
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34510.1

Sequence Viewer

Length: 1206 bp
ATGATGCTTTACAGCAACAATAGTTGGAGATCGAATTCCATTTTAATACTTCTACTTGGTCTCTCCATTGTGGCCGCCGCAGACTCCGCCGGCAAAACTTCACCGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGACACCGCCGTCAAACGGCTTCCCTGATGACGCAATCATCGAGGACACCTCCGAGATCCCGAGCTGGCGATCCGATGGTACGGTGGAGCTAATCAAGTCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCTGAGGGCCGTCACGCTGTTAGATTAGGAAACGATGCAGAGATCAGCCAAGAACTTACGGTGGAGAAAGGCTCTATCTACTCCGTCACGTTCAGTGCAGCCCGCACATGTGCACAACTCGAGTCGCTGAATGTTTCGGTAGCTTCTTCTGATGAACCTATCGCATCGCAAACCATTGACTTGCAAACGGTGTACAGCGTTCAAGGATGGGATCCATATGCATGGGCGTTTGAAGCGGTTGTGGATCGCGTCCGGTTGGTTTTTAAGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATCATTGACGACATTGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTGATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTTAGGAACACTACCTTAGGTGTTCTGCTTCCAACAAACCTCGATGAAGAAATATCGTCTCTTCCTGGATGGACCGTCGAATCGAACCGAGCAGTACGGTTTATTGACTCAGACCATTTCTCGGTCCCCGAGGGGAAGCGAGCTTTGGAACTTTTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGACAAAGGCGAACATTCCGTACAAGATGTCTTTCTCTTTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCTGTAATGGCTTTTGCTGGAGATCAAGCACAGAACTTTCATTATATGGCGCAAGCAAACTCGAGTTTCGAAAGATCGGAGTTGAACTTCACTGCGAAAGCTGAACGTACGAGGATCGCCTTCTACAGCATTTATTACAATACGAGGACGGACGATATGACTTCATTGTGTGGACCTGTGATTGATGACGTTAAGGTTTGGTTCTCCGGGTCTAGTAGAATTGGATTTAGTTTTCCGCTTTTTATTCTTCTTTCTTTGGTTTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

401

Amino Acids

43.94

Weight (kDa)

4.62

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 39 - 200 4.7e-62 Protein of unknown function (DUF642)
DUF642 PF04862 213 - 378 1.1e-17 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29980 AT1G29980 AT2G34510 AT2G34510
fragaria_vesca FvH4_3g05680
malus_domestica MD05G1284600.v1.1 MD10G1263000.v1.1
prunus_persica Prupe.4G079800_v2.0.a1
pyrus_communis pycom05g26390 pycom10g21920
rosa_chinensis RchiOBHm_Chr5g0013971
rosa_laevigata RLG00000032056
rosa_multiflora Rmu_co8449395.1_g000001
rosa_roxburghii Rroxscaffold_1G00062750
rosa_rugosa Rorug05G0013600 Rorug05G0013700
rosa_samantha Rh5AG107900 Rh5BG104600 Rh5CG116500 Rh5DG103200
rosa_wichuraiana Rw5G009430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccII CGCG 1 cut(s) 522
AciI CCGC 8 cut(s) 75, 78, 87, 146, 255, 376, 509, 1172
AclWI GGATC 7 cut(s) 190, 204, 479, 492, 525, 554, 1058
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 5 cut(s) 220, 467, 768, 884, 1045
AfiI CCNNNNNNNGG 4 cut(s) 155, 550, 569, 793
AflIII ACRYGT 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 103
AgsI TTSAA 4 cut(s) 476, 506, 656, 1021
AjnI CCWGG 2 cut(s) 544, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 800, 832
AluBI AGCT 6 cut(s) 204, 229, 416, 604, 815, 1037
AluI AGCT 6 cut(s) 204, 229, 416, 604, 815, 1037
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 4 cut(s) 65, 134, 735, 857
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 7 cut(s) 190, 204, 479, 492, 525, 554, 1058
Ama87I CYCGRG 4 cut(s) 199, 392, 800, 997
AoxI GGCC 2 cut(s) 72, 280
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 642
AsiGI ACCGGT 1 cut(s) 103
AspLEI GCGC 1 cut(s) 988
AspS9I GGNCC 6 cut(s) 280, 572, 662, 744, 796, 1109
AsuC2I CCSGG 1 cut(s) 1144
AsuHPI GGTGA 1 cut(s) 93
AsuII TTCGAA 1 cut(s) 1005
AvaI CYCGRG 4 cut(s) 199, 392, 800, 997
AvaII GGWCC 5 cut(s) 572, 662, 744, 796, 1109
AxyI CCTNAGG 2 cut(s) 276, 688
BaeGI GKGCMC 1 cut(s) 388
BamHI GGATCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 209, 474, 735
BceAI ACGGC 6 cut(s) 130, 133, 145, 172, 267, 578
BciT130I CCWGG 2 cut(s) 546, 738
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 4 cut(s) 65, 134, 735, 857
BfaI CTAG 2 cut(s) 1149, 1204
BfmI CTRYAG 1 cut(s) 1060
BisI GCNGC 3 cut(s) 75, 78, 372
BlsI GCNGC 3 cut(s) 76, 79, 373
Bme1390I CCNGG 3 cut(s) 546, 738, 1144
Bme18I GGWCC 5 cut(s) 572, 662, 744, 796, 1109
BmeT110I CYCGRG 4 cut(s) 199, 392, 800, 997
BmgT120I GGNCC 6 cut(s) 280, 572, 662, 744, 796, 1109
BmiI GGNNCC 3 cut(s) 486, 798, 930
BmrFI CCNGG 3 cut(s) 546, 738, 1144
BmsI GCATC 2 cut(s) 298, 446
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 4 cut(s) 173, 205, 329, 361
BpmI CTGGAG 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 1005
BpuMI CCSGG 1 cut(s) 1144
BsaBI GATNNNNATC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 544, 665, 801
BsaWI WCCGGW 3 cut(s) 103, 239, 525
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 550, 569, 793
Bse118I RCCGGY 2 cut(s) 89, 103
Bse21I CCTNAGG 2 cut(s) 276, 688
Bse3DI GCAATG 2 cut(s) 588, 637
Bse8I GATNNNNATC 1 cut(s) 266
BseBI CCWGG 2 cut(s) 546, 738
BseDI CCNNGG 3 cut(s) 544, 665, 801
BseGI GGATG 5 cut(s) 264, 485, 562, 675, 746
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 4 cut(s) 155, 550, 569, 793
BseMI GCAATG 2 cut(s) 588, 637
BseMII CTCAG 2 cut(s) 267, 795
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 74, 282
BshTI ACCGGT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 4 cut(s) 199, 392, 800, 997
BsiSI CCGG 5 cut(s) 90, 104, 240, 526, 1143
BsiWI CGTACG 1 cut(s) 1043
BslFI GGGAC 3 cut(s) 782, 918, 929
BslI CCNNNNNNNGG 4 cut(s) 155, 550, 569, 793
BsmAI GTCTC 4 cut(s) 65, 134, 735, 857
BsmBI CGTCTC 1 cut(s) 735
BsmFI GGGAC 3 cut(s) 782, 918, 929
BsnI GGCC 2 cut(s) 74, 282
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 4 cut(s) 199, 392, 800, 997
Bsp119I TTCGAA 1 cut(s) 1005
Bsp1286I GDGCHC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 465
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 8 cut(s) 75, 78, 87, 146, 255, 376, 509, 1172
BspANI GGCC 2 cut(s) 74, 282
BspCNI CTCAG 2 cut(s) 268, 794
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 486, 798, 930
BspPI GGATC 7 cut(s) 190, 204, 479, 492, 525, 554, 1058
BspT104I TTCGAA 1 cut(s) 1005
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 588, 637
BsrFI RCCGGY 2 cut(s) 89, 103
BsrGI TGTACA 1 cut(s) 465
BssAI RCCGGY 2 cut(s) 89, 103
BssECI CCNNGG 3 cut(s) 544, 665, 801
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 2 cut(s) 546, 738
Bst4CI ACNGT 5 cut(s) 223, 334, 463, 748, 771
Bst6I CTCTTC 1 cut(s) 738
BstAUI TGTACA 1 cut(s) 465
BstBI TTCGAA 1 cut(s) 1005
BstC8I GCNNGC 5 cut(s) 91, 206, 376, 813, 990
BstDEI CTNAG 3 cut(s) 276, 688, 781
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 5 cut(s) 264, 485, 562, 675, 746
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 988
BstMAI GTCTC 4 cut(s) 65, 134, 735, 857
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 86, 506, 840, 944
BstNI CCWGG 2 cut(s) 546, 738
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 3 cut(s) 544, 736, 1142
BstSFI CTRYAG 1 cut(s) 1060
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 195, 484
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 2 cut(s) 195, 484
Bsu36I CCTNAGG 2 cut(s) 276, 688
BsuRI GGCC 2 cut(s) 74, 282
BtgI CCRYGG 1 cut(s) 665
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 5 cut(s) 264, 485, 562, 675, 746
BtsI GCAGTG 2 cut(s) 642, 1026
BtsIMutI CAGTG 3 cut(s) 373, 642, 1026
Cac8I GCNNGC 5 cut(s) 91, 206, 376, 813, 990
CfoI GCGC 1 cut(s) 988
Cfr10I RCCGGY 2 cut(s) 89, 103
Cfr13I GGNCC 6 cut(s) 280, 572, 662, 744, 796, 1109
CseI GACGC 2 cut(s) 179, 511
Csp6I GTAC 5 cut(s) 219, 466, 767, 883, 1044
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 4 cut(s) 381, 495, 550, 666
CviQI GTAC 5 cut(s) 219, 466, 767, 883, 1044
DdeI CTNAG 3 cut(s) 276, 688, 781
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 665
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 5 cut(s) 572, 662, 744, 796, 1109
Eco81I CCTNAGG 2 cut(s) 276, 688
Eco88I CYCGRG 4 cut(s) 199, 392, 800, 997
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 544, 736
EcoT14I CCWWGG 1 cut(s) 665
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 665
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 4 cut(s) 384, 498, 553, 669
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FaqI GGGAC 3 cut(s) 782, 918, 929
FatI CATG 4 cut(s) 380, 494, 549, 665
FauI CCCGC 2 cut(s) 248, 383
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 75, 78, 372
FokI GGATG 5 cut(s) 271, 492, 569, 682, 753
Fsp4HI GCNGC 3 cut(s) 75, 78, 372
FspBI CTAG 2 cut(s) 1149, 1204
GlaI GCGC 1 cut(s) 987
GluI GCNGC 3 cut(s) 75, 78, 372
GsuI CTGGAG 1 cut(s) 975
HaeIII GGCC 2 cut(s) 74, 282
HapII CCGG 5 cut(s) 90, 104, 240, 526, 1143
HgaI GACGC 2 cut(s) 179, 511
HhaI GCGC 1 cut(s) 988
Hin1II CATG 4 cut(s) 384, 498, 553, 669
Hin6I GCGC 1 cut(s) 986
HinP1I GCGC 1 cut(s) 986
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 83, 395, 752, 779
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 5 cut(s) 90, 104, 240, 526, 1143
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 5 cut(s) 127, 386, 466, 572, 1109
Hpy188I TCNGA 5 cut(s) 193, 214, 424, 784, 1015
Hpy188III TCNNGA 3 cut(s) 199, 265, 614
Hpy8I GTNNAC 5 cut(s) 127, 386, 466, 572, 1109
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 3 cut(s) 653, 833, 1066
HpyCH4III ACNGT 5 cut(s) 223, 334, 463, 748, 771
HpyCH4IV ACGT 3 cut(s) 362, 1042, 1125
HpyCH4V TGCA 6 cut(s) 311, 371, 386, 457, 494, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 506, 840, 944
HpyF3I CTNAG 3 cut(s) 276, 688, 781
HpySE526I ACGT 3 cut(s) 362, 1042, 1125
Hsp92II CATG 4 cut(s) 384, 498, 553, 669
HspAI GCGC 1 cut(s) 986
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 298, 446
MaeI CTAG 2 cut(s) 1149, 1204
MaeII ACGT 3 cut(s) 362, 1042, 1125
MaeIII GTNAC 2 cut(s) 284, 358
MboII GAAGA 6 cut(s) 122, 411, 668, 725, 731, 1175
MflI RGATCY 2 cut(s) 195, 484
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 3 cut(s) 34, 846, 1155
MlyI GAGTC 3 cut(s) 77, 404, 773
MmeI TCCRAC 2 cut(s) 5, 728
MnlI CCTC 8 cut(s) 175, 199, 271, 547, 722, 796, 1041, 1074
Mph1103I ATGCAT 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 6 cut(s) 44, 126, 537, 597, 642, 1128
MslI CAYNNNNRTG 1 cut(s) 493
MspI CCGG 5 cut(s) 90, 104, 240, 526, 1143
MspR9I CCNGG 3 cut(s) 546, 738, 1144
MvaI CCWGG 2 cut(s) 546, 738
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 4 cut(s) 86, 506, 840, 944
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 1144
NcoI CCATGG 1 cut(s) 665
NdeI CATATG 1 cut(s) 490
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 4 cut(s) 384, 498, 553, 669
NlaIV GGNNCC 3 cut(s) 486, 798, 930
NmuCI GTSAC 2 cut(s) 284, 358
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 384
NspV TTCGAA 1 cut(s) 1005
PaeR7I CTCGAG 2 cut(s) 392, 997
PciI ACATGT 1 cut(s) 380
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 591
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 752
Pfl23II CGTACG 1 cut(s) 1043
PfoI TCCNGGA 1 cut(s) 736
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 3 cut(s) 76, 79, 373
PleI GAGTC 3 cut(s) 77, 403, 773
PpsI GAGTC 3 cut(s) 77, 403, 773
PscI ACATGT 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 544, 736
PspGI CCWGG 2 cut(s) 544, 736
PspLI CGTACG 1 cut(s) 1043
PspN4I GGNNCC 3 cut(s) 486, 798, 930
PspPI GGNCC 6 cut(s) 280, 572, 662, 744, 796, 1109
PspXI VCTCGAGB 2 cut(s) 392, 997
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PsuI RGATCY 2 cut(s) 195, 484
RsaI GTAC 5 cut(s) 220, 467, 768, 884, 1045
RsaNI GTAC 5 cut(s) 219, 466, 767, 883, 1044
RseI CAYNNNNRTG 1 cut(s) 493
SaqAI TTAA 6 cut(s) 44, 126, 537, 597, 642, 1128
SatI GCNGC 3 cut(s) 75, 78, 372
Sau96I GGNCC 6 cut(s) 280, 572, 662, 744, 796, 1109
SchI GAGTC 3 cut(s) 77, 404, 773
ScrFI CCNGG 3 cut(s) 546, 738, 1144
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 2 cut(s) 298, 446
SfcI CTRYAG 1 cut(s) 1060
Sfr274I CTCGAG 2 cut(s) 392, 997
SfuI TTCGAA 1 cut(s) 1005
SinI GGWCC 5 cut(s) 572, 662, 744, 796, 1109
SlaI CTCGAG 2 cut(s) 392, 997
SmiMI CAYNNNNRTG 1 cut(s) 493
SmlI CTYRAG 2 cut(s) 392, 997
SmoI CTYRAG 2 cut(s) 392, 997
Sse9I AATT 3 cut(s) 34, 846, 1155
SsiI CCGC 8 cut(s) 75, 78, 87, 146, 255, 376, 509, 1172
SspMI CTAG 2 cut(s) 1149, 1204
StyD4I CCNGG 3 cut(s) 544, 736, 1142
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 5 cut(s) 223, 334, 463, 748, 771
TaiI ACGT 3 cut(s) 365, 1045, 1128
TaqI TCGA 9 cut(s) 32, 108, 180, 393, 714, 750, 755, 998, 1005
TaqII GACCGA 1 cut(s) 784
TasI AATT 3 cut(s) 34, 846, 1155
TatI WGTACW 1 cut(s) 465
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 6 cut(s) 44, 126, 537, 597, 642, 1128
Tru9I TTAA 6 cut(s) 44, 126, 537, 597, 642, 1128
TscAI CASTG 3 cut(s) 373, 642, 1033
TseFI GTSAC 2 cut(s) 284, 358
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 284, 358
TspDTI ATGAA 5 cut(s) 441, 732, 965, 1089, 1189
TspGWI ACGGA 3 cut(s) 346, 870, 1100
TspRI CASTG 3 cut(s) 373, 642, 1033
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 5 cut(s) 572, 662, 744, 796, 1109
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 384
XhoI CTCGAG 2 cut(s) 392, 997
XspI CTAG 2 cut(s) 1149, 1204
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.