Rorug05G0013700

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010097
Physical Location & Seq
Reverse (-)
901088 .. 903251
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0013700.1

Sequence Viewer

Length: 768 bp
ATGGAGAAGACGACGATCGGAAAGAGATTCGTCGGCAAAGTAGTTCTCGTCACCGCTTCTACTCAGGGCATCGGCTTCGCCATCGCCGAGCGACTCGGCCTCGAAGGCGCCTCCGTCGTCATCTCCTCCCGCAAGCAGAAAAACGTGGATGAAGCGGTTGATCAACTTAAAGCGCAAGGAATTGAAGCTTTGGGAGTCGTCTGTCACGTGTCTAATGAGCAGCAAAGGAAGAATCTGATAGACAAGACTGTGCAGAAATATGGAAAGATAGATGTCGTAGTATCAAATGCTGCTGCCAATCCATCAGTTGAGAGGATATTGCTAACCCAAGAGTCTGTTCTTGACAAGCTATGGGAAATAAATGTCAAAGCTTCTATACTTCTTCTAAAGGAAGCAGCTCCTCACTTGAAGAAAGGTTCTTCTGTTATTCTCATATCCTCAATTGCTGGCTTCCAACCACCAGCTTCCATGGCAATGTATGGAGTCACTAAAACAGCCCTTTTTGGGTTAACTAAGGCCCTTGCGGATGAAATGGCCCCAGATACTCGTGTAAATTGTATTGCTCCTGGTTTTGTGCCTACAAACTTTGCTTCATACATCACAAGAACTGCTGCTGTGAGGAAGGAGCTCGAGGACAAGACGCTACTTAAAAGGCTTGGTACAACTGGAGACATGGCTGCTACCGCTGCCTTTTTGGCATCTGATGATGCTTCTTACATTACAGGAGAAACTCTGGTGGTGGCTGGAGGGATGCCGTCAAGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

255

Amino Acids

27.09

Weight (kDa)

9.13

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 12 - 225 7.4e-15 SDR-like rossmann domain
adh_short PF00106 13 - 201 4.1e-45 short chain dehydrogenase
KR PF08659 15 - 179 2.9e-11 KR domain
adh_short_C2 PF13561 19 - 251 1.9e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29980 AT1G29980 AT2G34510 AT2G34510
fragaria_vesca FvH4_3g05680
malus_domestica MD05G1284600.v1.1 MD10G1263000.v1.1
prunus_persica Prupe.4G079800_v2.0.a1
pyrus_communis pycom05g26390 pycom10g21920
rosa_chinensis RchiOBHm_Chr5g0013971
rosa_laevigata RLG00000032056
rosa_multiflora Rmu_co8449395.1_g000001
rosa_roxburghii Rroxscaffold_1G00062750
rosa_rugosa Rorug05G0013600 Rorug05G0013700
rosa_samantha Rh5AG107900 Rh5BG104600 Rh5CG116500 Rh5DG103200
rosa_wichuraiana Rw5G009430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 5 cut(s) 54, 130, 155, 524, 684
AcvI CACGTG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 661
AfiI CCNNNNNNNGG 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 185, 409
AjnI CCWGG 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 6 cut(s) 188, 349, 371, 398, 464, 628
AluI AGCT 6 cut(s) 188, 349, 371, 398, 464, 628
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 663
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 3 cut(s) 97, 516, 534
ApeKI GCWGC 7 cut(s) 220, 290, 293, 395, 611, 677, 686
AspLEI GCGC 2 cut(s) 110, 175
AspS9I GGNCC 2 cut(s) 517, 535
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 629
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BccI CCATC 2 cut(s) 89, 310
BceAI ACGGC 1 cut(s) 739
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 1 cut(s) 766
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 3 cut(s) 105, 695, 760
BisI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
BlsI GCNGC 7 cut(s) 222, 292, 295, 397, 613, 679, 688
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 517, 535
BmiI GGNNCC 2 cut(s) 109, 537
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 4 cut(s) 78, 697, 707, 741
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 687, 765
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 154, 532, 756
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 115, 390
BseXI GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 99, 518, 536
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 663
BsnI GGCC 3 cut(s) 99, 518, 536
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 2 cut(s) 15, 160
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 5 cut(s) 54, 130, 155, 524, 684
BspANI GGCC 3 cut(s) 99, 518, 536
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 109, 537
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 15, 160
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 134, 448
BstDEI CTNAG 2 cut(s) 63, 513
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 154, 532, 756
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 175
BstKTI GATC 2 cut(s) 18, 163
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 15, 160
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstV1I GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 3 cut(s) 99, 518, 536
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 154, 532, 756
Cac8I GCNNGC 2 cut(s) 134, 448
CfoI GCGC 2 cut(s) 110, 175
Cfr13I GGNCC 2 cut(s) 517, 535
CseI GACGC 1 cut(s) 649
Csp6I GTAC 1 cut(s) 660
CviAII CATG 2 cut(s) 469, 673
CviQI GTAC 1 cut(s) 660
DdeI CTNAG 2 cut(s) 63, 513
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 17, 162
DpnII GATC 2 cut(s) 15, 160
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 628
Eco72I CACGTG 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 630
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 472, 676
FaiI YATR 8 cut(s) 261, 352, 377, 434, 470, 480, 595, 674
FatI CATG 2 cut(s) 468, 672
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
FokI GGATG 3 cut(s) 161, 539, 763
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
FspBI CTAG 1 cut(s) 766
GlaI GCGC 2 cut(s) 109, 174
GluI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
GsuI CTGGAG 2 cut(s) 687, 765
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 99, 518, 536
HgaI GACGC 1 cut(s) 649
HhaI GCGC 2 cut(s) 110, 175
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 472, 676
Hin6I GCGC 2 cut(s) 108, 173
HinP1I GCGC 2 cut(s) 108, 173
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 2 cut(s) 186, 369
HinfI GANTC 6 cut(s) 27, 93, 195, 232, 332, 483
HpaI GTTAAC 1 cut(s) 510
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 3 cut(s) 20, 237, 703
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 510
Hpy99I CGWCG 3 cut(s) 16, 35, 119
HpyAV CCTTC 2 cut(s) 98, 616
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 144, 207
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
HpyF3I CTNAG 2 cut(s) 63, 513
HpySE526I ACGT 2 cut(s) 144, 207
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 472, 676
HspAI GCGC 2 cut(s) 108, 173
KasI GGCGCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 15, 160
LmnI GCTCC 3 cut(s) 403, 568, 625
Lsp1109I GCAGC 7 cut(s) 232, 277, 280, 407, 598, 664, 673
LweI GCATC 4 cut(s) 78, 697, 707, 741
MaeI CTAG 1 cut(s) 766
MaeII ACGT 2 cut(s) 144, 207
MaeIII GTNAC 3 cut(s) 49, 203, 484
MalI GATC 2 cut(s) 17, 162
MboI GATC 2 cut(s) 15, 160
MboII GAAGA 5 cut(s) 19, 241, 374, 411, 421
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 3 cut(s) 180, 441, 553
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 4 cut(s) 87, 204, 341, 492
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 9 cut(s) 110, 121, 136, 306, 411, 448, 612, 625, 740
MseI TTAA 3 cut(s) 168, 509, 648
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 6 cut(s) 105, 470, 683, 686, 695, 760
NarI GGCGCC 1 cut(s) 108
NcoI CCATGG 1 cut(s) 468
NdeII GATC 2 cut(s) 15, 160
NlaIII CATG 2 cut(s) 472, 676
NlaIV GGNNCC 2 cut(s) 109, 537
NmeAIII GCCGAG 2 cut(s) 75, 112
NmuCI GTSAC 3 cut(s) 49, 203, 484
PaeR7I CTCGAG 1 cut(s) 629
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 204
PfeI GAWTC 2 cut(s) 27, 232
PkrI GCNGC 7 cut(s) 222, 292, 295, 397, 613, 679, 688
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 4 cut(s) 87, 203, 340, 491
PluTI GGCGCC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 4 cut(s) 87, 203, 340, 491
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 565
PspCI CACGTG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 2 cut(s) 109, 537
PspPI GGNCC 2 cut(s) 517, 535
PspXI VCTCGAGB 1 cut(s) 629
PvuI CGATCG 1 cut(s) 18
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 168, 509, 648
SatI GCNGC 7 cut(s) 221, 291, 294, 396, 612, 678, 687
Sau3AI GATC 2 cut(s) 15, 160
Sau96I GGNCC 2 cut(s) 517, 535
SchI GAGTC 4 cut(s) 87, 204, 341, 492
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 630
SetI ASST 9 cut(s) 147, 190, 210, 351, 373, 400, 418, 466, 630
SfaNI GCATC 4 cut(s) 78, 697, 707, 741
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 3 cut(s) 180, 441, 553
SsiI CCGC 5 cut(s) 54, 130, 155, 524, 684
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 766
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 147, 210
TaqI TCGA 2 cut(s) 102, 630
TasI AATT 3 cut(s) 180, 441, 553
TfiI GAWTC 2 cut(s) 27, 232
Tru1I TTAA 3 cut(s) 168, 509, 648
Tru9I TTAA 3 cut(s) 168, 509, 648
TseFI GTSAC 3 cut(s) 49, 203, 484
TseI GCWGC 7 cut(s) 220, 290, 293, 395, 611, 677, 686
Tsp45I GTSAC 3 cut(s) 49, 203, 484
TspDTI ATGAA 3 cut(s) 165, 543, 582
TspGWI ACGGA 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 629
XspI CTAG 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.