RchiOBHm_Chr5g0013971

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
9464524 .. 9468553
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29446

Sequence Viewer

Length: 1182 bp
ATGGGTCGGAGCTCCGCAACACCCAAATGGGTCTTACCGTTTATGCTTGTTCTTGGTTCTCTGGCTTCTCAAATCTCAGCTTTAGATGGACCACTACCAAATGGAGACTTTGAGGCAACTCCAACCGGCGGTTTCTCCAGTGACGCTATAGTAGACGGGCCCACAGGGATCCCCAGCTGGAAATCAAACGGCACCGTTGAGGTAGTCGAGGCCGGGCAAAAACAGGGTGGGATGCTCCTCATCGTACCGCAAGGTAGACACGCAGTCCGGCTCGGAAACGACGCCGAAGTGAGCCAGGACATCAAGGTGGAGAAGGGGTCGATCTACTCCGTCACGTTCAGCGCGGCTCGCACTTGCGCGCAGCTGGAGTCGCTGAACGTGTCGGTGCTTCCCGCGTCGCAGACGATAGACCTGCAGACATTGTACAGCGTGCAGGGCTGGGACCCGTACGCGTGGGCTTTTGAGGCCGAAGAGGATGATGTGAAGCTGGTGTTCAGGAACCCAGGGATGGAGGACGACCCTACTTGTGGGCCCATCATTGATGACGTTGCTATCAAGAAGCTCTTTACCCCTGATAAGCCCAAAAACAATGCAGTGGTTAATGGTGATTTTGAGGAAGGTCCATGGATGCTTGCAAACGTCTCTTTAGGAGTGCTCCTTCCTACAAACCTCGACGAAGAAACATCGTCCTTACCGGGTTGGAATGTTGAATCCAATCGGGCTGTTCGTTACATTGACTCCTACCACTTCAGTGTGCCACAGGGCAAGAGAGCGATAGAATTGCTTTCTGGGAAGGAAGGCATCATTTCCCAAATGGTTGAAACTAAACCGAACAAGCCATATACCCTCACCTTCTCTTTAGGCCATGCCAATGACAAATGCAAGCAGCCTCTTGCTGTCATGGCCTTTGCCGGCGACCAAGCCCAAAATGTCCATTACACCCCTAATTCCAACAGCACATTCCAAAGTGCCAATGTGAATTTCACTGCCAAAGCTGAGAGGTCAAGGATTGCATTCTACAGTGTGTACTATAACACAAGGACTGATGATATGAGCTCACTGTGTGGACCTGTGGTTGATGATGTTAGGGTTTGGTTTTCAGGGTCAAGGAGAAATGGGCTTGGAGGGTTGGGCCTAAGGCTTGGGGTGGCTTTGTGGGTTTTTGTGTTGTTTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

42.61

Weight (kDa)

4.95

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 31 - 186 2.2e-64 Protein of unknown function (DUF642)
DUF642 PF04862 199 - 364 4.7e-20 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 2 cut(s) 153, 256
AccII CGCG 4 cut(s) 344, 359, 395, 452
AciI CCGC 5 cut(s) 15, 129, 248, 344, 393
AclWI GGATC 2 cut(s) 163, 176
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 1 cut(s) 733
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 4 cut(s) 246, 425, 449, 1028
AfiI CCNNNNNNNGG 3 cut(s) 128, 508, 527
AflIII ACRYGT 2 cut(s) 378, 450
AgsI TTSAA 2 cut(s) 710, 821
AhdI GACNNNNNGTC 1 cut(s) 263
AjnI CCWGG 2 cut(s) 294, 502
AjuI GAANNNNNNNTTGG 4 cut(s) 944, 965, 976, 997
AleI CACNNNNGTG 1 cut(s) 750
AluBI AGCT 8 cut(s) 12, 80, 177, 364, 487, 562, 995, 1056
AluI AGCT 8 cut(s) 12, 80, 177, 364, 487, 562, 995, 1056
Alw21I GWGCWC 3 cut(s) 14, 657, 1058
Alw26I GTCTC 2 cut(s) 99, 646
AlwI GGATC 2 cut(s) 163, 176
AoxI GGCC 7 cut(s) 158, 210, 465, 530, 862, 903, 1132
ApaI GGGCCC 2 cut(s) 162, 534
ApeKI GCWGC 2 cut(s) 361, 886
ApoI RAATTY 1 cut(s) 979
AspLEI GCGC 3 cut(s) 344, 359, 361
AspS9I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 620, 1067, 1132
AsuC2I CCSGG 2 cut(s) 214, 696
AsuHPI GGTGA 2 cut(s) 617, 841
AvaII GGWCC 4 cut(s) 89, 442, 620, 1067
AxyI CCTNAGG 1 cut(s) 1136
BaeGI GKGCMC 2 cut(s) 162, 534
BamHI GGATCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 4 cut(s) 14, 162, 534, 1058
Bbv12I GWGCWC 3 cut(s) 14, 657, 1058
BbvI GCAGC 2 cut(s) 373, 898
BccI CCATC 3 cut(s) 80, 502, 542
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 4 cut(s) 394, 428, 763, 797
BciT130I CCWGG 2 cut(s) 296, 504
BcnI CCSGG 2 cut(s) 214, 696
BcoDI GTCTC 2 cut(s) 99, 646
BfmI CTRYAG 3 cut(s) 147, 413, 1018
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 3 cut(s) 345, 362, 887
BlsI GCNGC 3 cut(s) 346, 363, 888
Bme1390I CCNGG 4 cut(s) 214, 296, 504, 696
Bme18I GGWCC 4 cut(s) 89, 442, 620, 1067
BmeRI GACNNNNNGTC 1 cut(s) 263
BmgT120I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 620, 1067, 1132
BmiI GGNNCC 7 cut(s) 160, 170, 193, 443, 444, 500, 532
BmrFI CCNGG 4 cut(s) 214, 296, 504, 696
BmsI GCATC 3 cut(s) 222, 618, 810
BpmI CTGGAG 2 cut(s) 121, 386
BpuMI CCSGG 2 cut(s) 214, 696
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 502, 503, 623
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 722, 752
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 508, 527
Bse118I RCCGGY 2 cut(s) 125, 911
Bse1I ACTGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 1136
BseBI CCWGG 2 cut(s) 296, 504
BseDI CCNNGG 3 cut(s) 502, 503, 623
BseGI GGATG 4 cut(s) 237, 481, 513, 633
BseLI CCNNNNNNNGG 3 cut(s) 128, 508, 527
BseMII CTCAG 2 cut(s) 90, 987
BseNI ACTGG 1 cut(s) 138
BsePI GCGCGC 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 2 cut(s) 162, 534
BseXI GCAGC 2 cut(s) 373, 898
BseYI CCCAGC 2 cut(s) 173, 438
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 4 cut(s) 344, 359, 395, 452
BshFI GGCC 7 cut(s) 160, 212, 467, 532, 864, 905, 1134
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 3 cut(s) 14, 657, 1058
BsiSI CCGG 5 cut(s) 126, 213, 268, 695, 912
BsiWI CGTACG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 3 cut(s) 128, 508, 527
BsmAI GTCTC 2 cut(s) 99, 646
BsmBI CGTCTC 1 cut(s) 646
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 7 cut(s) 160, 212, 467, 532, 864, 905, 1134
Bsp120I GGGCCC 2 cut(s) 158, 530
Bsp1286I GDGCHC 5 cut(s) 14, 162, 534, 657, 1058
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 2 cut(s) 168, 321
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 5 cut(s) 15, 129, 248, 344, 393
BspANI GGCC 7 cut(s) 160, 212, 467, 532, 864, 905, 1134
BspCNI CTCAG 2 cut(s) 89, 988
BspFNI CGCG 4 cut(s) 344, 359, 395, 452
BspLI GGNNCC 7 cut(s) 160, 170, 193, 443, 444, 500, 532
BspMAI CTGCAG 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 2 cut(s) 163, 176
BspT107I GGYRCC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 125, 911
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 2 cut(s) 125, 911
BssECI CCNNGG 3 cut(s) 502, 503, 623
BssHII GCGCGC 1 cut(s) 357
BssMI GATC 2 cut(s) 168, 321
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 296, 504
Bst4CI ACNGT 4 cut(s) 39, 196, 1022, 1062
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 6 cut(s) 349, 359, 431, 633, 884, 913
BstDEI CTNAG 3 cut(s) 76, 996, 1136
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 4 cut(s) 237, 481, 513, 633
BstFNI CGCG 4 cut(s) 344, 359, 395, 452
BstHHI GCGC 3 cut(s) 344, 359, 361
BstKTI GATC 2 cut(s) 171, 324
BstMAI GTCTC 2 cut(s) 99, 646
BstMBI GATC 2 cut(s) 168, 321
BstMWI GCNNNNNNNGC 5 cut(s) 348, 370, 435, 464, 902
BstNI CCWGG 2 cut(s) 296, 504
BstSCI CCNGG 4 cut(s) 212, 294, 502, 694
BstSFI CTRYAG 3 cut(s) 147, 413, 1018
BstSLI GKGCMC 2 cut(s) 162, 534
BstUI CGCG 4 cut(s) 344, 359, 395, 452
BstV1I GCAGC 2 cut(s) 373, 898
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 1136
BsuRI GGCC 7 cut(s) 160, 212, 467, 532, 864, 905, 1134
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 4 cut(s) 237, 481, 513, 633
BtsI GCAGTG 2 cut(s) 600, 984
BtsIMutI CAGTG 6 cut(s) 145, 600, 757, 984, 1027, 1058
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 6 cut(s) 349, 359, 431, 633, 884, 913
CfoI GCGC 3 cut(s) 344, 359, 361
Cfr10I RCCGGY 2 cut(s) 125, 911
Cfr13I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 620, 1067, 1132
CseI GACGC 3 cut(s) 152, 290, 384
Csp6I GTAC 4 cut(s) 245, 424, 448, 1027
CviAII CATG 3 cut(s) 624, 866, 901
CviQI GTAC 4 cut(s) 245, 424, 448, 1027
DdeI CTNAG 3 cut(s) 76, 996, 1136
DpnI GATC 2 cut(s) 170, 323
DpnII GATC 2 cut(s) 168, 321
DraIII CACNNNGTG 1 cut(s) 1064
DriI GACNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 465
Eam1105I GACNNNNNGTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 465
Ecl136II GAGCTC 2 cut(s) 12, 1056
Eco130I CCWWGG 1 cut(s) 623
Eco24I GRGCYC 4 cut(s) 14, 162, 534, 1058
Eco47I GGWCC 4 cut(s) 89, 442, 620, 1067
Eco53kI GAGCTC 2 cut(s) 12, 1056
Eco57I CTGAAG 1 cut(s) 733
Eco81I CCTNAGG 1 cut(s) 1136
EcoICRI GAGCTC 2 cut(s) 12, 1056
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 294, 502
EcoT14I CCWWGG 1 cut(s) 623
EcoT38I GRGCYC 4 cut(s) 14, 162, 534, 1058
ErhI CCWWGG 1 cut(s) 623
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 3 cut(s) 627, 869, 904
FaiI YATR 9 cut(s) 44, 149, 625, 841, 843, 867, 902, 1032, 1052
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 623, 865, 900
FauI CCCGC 1 cut(s) 400
FblI GTMKAC 2 cut(s) 153, 256
Fnu4HI GCNGC 3 cut(s) 345, 362, 887
FokI GGATG 4 cut(s) 244, 488, 520, 640
FriOI GRGCYC 4 cut(s) 14, 162, 534, 1058
Fsp4HI GCNGC 3 cut(s) 345, 362, 887
GlaI GCGC 3 cut(s) 343, 358, 360
GluI GCNGC 3 cut(s) 345, 362, 887
GsaI CCCAGC 2 cut(s) 177, 442
GsuI CTGGAG 2 cut(s) 121, 386
HaeIII GGCC 7 cut(s) 160, 212, 467, 532, 864, 905, 1134
HapII CCGG 5 cut(s) 126, 213, 268, 695, 912
HgaI GACGC 3 cut(s) 152, 290, 384
HhaI GCGC 3 cut(s) 344, 359, 361
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 627, 869, 904
Hin6I GCGC 3 cut(s) 342, 357, 359
HinP1I GCGC 3 cut(s) 342, 357, 359
HinfI GANTC 3 cut(s) 368, 710, 737
HpaII CCGG 5 cut(s) 126, 213, 268, 695, 912
HphI GGTGA 2 cut(s) 617, 841
Hpy166II GTNNAC 4 cut(s) 154, 257, 1027, 1067
Hpy188I TCNGA 2 cut(s) 9, 275
Hpy188III TCNNGA 2 cut(s) 496, 556
Hpy8I GTNNAC 4 cut(s) 154, 257, 1027, 1067
Hpy99I CGWCG 3 cut(s) 284, 400, 677
HpyAV CCTTC 6 cut(s) 307, 611, 668, 787, 791, 862
HpyCH4III ACNGT 4 cut(s) 39, 196, 1022, 1062
HpyCH4IV ACGT 4 cut(s) 335, 378, 546, 639
HpyCH4V TGCA 6 cut(s) 415, 433, 593, 635, 882, 1013
HpyF10VI GCNNNNNNNGC 5 cut(s) 348, 370, 435, 464, 902
HpyF3I CTNAG 3 cut(s) 76, 996, 1136
HpySE526I ACGT 4 cut(s) 335, 378, 546, 639
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 627, 869, 904
HspAI GCGC 3 cut(s) 342, 357, 359
KflI GGGWCCC 1 cut(s) 442
KroI GCCGGC 1 cut(s) 911
KroNI GCCGGC 1 cut(s) 913
Kzo9I GATC 2 cut(s) 168, 321
LmnI GCTCC 4 cut(s) 9, 17, 240, 660
Lsp1109I GCAGC 2 cut(s) 373, 898
LweI GCATC 3 cut(s) 222, 618, 810
MaeII ACGT 4 cut(s) 335, 378, 546, 639
MaeIII GTNAC 3 cut(s) 140, 331, 728
MalI GATC 2 cut(s) 170, 323
MboI GATC 2 cut(s) 168, 321
MboII GAAGA 2 cut(s) 482, 689
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 5 cut(s) 14, 162, 534, 657, 1058
MluCI AATT 3 cut(s) 779, 946, 979
MluI ACGCGT 1 cut(s) 450
MlyI GAGTC 2 cut(s) 377, 731
MmeI TCCRAC 3 cut(s) 146, 680, 975
MroNI GCCGGC 1 cut(s) 911
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 4 cut(s) 25, 305, 750, 870
MspA1I CMGCKG 2 cut(s) 177, 364
MspI CCGG 5 cut(s) 126, 213, 268, 695, 912
MspR9I CCNGG 4 cut(s) 214, 296, 504, 696
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 2 cut(s) 296, 504
MvnI CGCG 4 cut(s) 344, 359, 395, 452
MwoI GCNNNNNNNGC 5 cut(s) 348, 370, 435, 464, 902
NaeI GCCGGC 1 cut(s) 913
NciI CCSGG 2 cut(s) 214, 696
NcoI CCATGG 1 cut(s) 623
NdeII GATC 2 cut(s) 168, 321
NgoMIV GCCGGC 1 cut(s) 911
NlaIII CATG 3 cut(s) 627, 869, 904
NlaIV GGNNCC 7 cut(s) 160, 170, 193, 443, 444, 500, 532
NmuCI GTSAC 2 cut(s) 140, 331
OliI CACNNNNGTG 1 cut(s) 750
PasI CCCWGGG 1 cut(s) 503
PauI GCGCGC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PctI GAATGC 1 cut(s) 1013
PdiI GCCGGC 1 cut(s) 913
PfeI GAWTC 1 cut(s) 710
Pfl23II CGTACG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 346, 363, 888
PleI GAGTC 2 cut(s) 376, 731
PpsI GAGTC 2 cut(s) 376, 731
PpuMI RGGWCCY 1 cut(s) 442
Psp124BI GAGCTC 2 cut(s) 14, 1058
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 294, 502
PspFI CCCAGC 2 cut(s) 173, 438
PspGI CCWGG 2 cut(s) 294, 502
PspLI CGTACG 1 cut(s) 447
PspN4I GGNNCC 7 cut(s) 160, 170, 193, 443, 444, 500, 532
PspOMI GGGCCC 2 cut(s) 158, 530
PspPI GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 620, 1067, 1132
PspPPI RGGWCCY 1 cut(s) 442
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 168
PteI GCGCGC 1 cut(s) 357
PvuII CAGCTG 2 cut(s) 177, 364
RsaI GTAC 4 cut(s) 246, 425, 449, 1028
RsaNI GTAC 4 cut(s) 245, 424, 448, 1027
RseI CAYNNNNRTG 4 cut(s) 25, 305, 750, 870
SacI GAGCTC 2 cut(s) 14, 1058
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 3 cut(s) 345, 362, 887
Sau3AI GATC 2 cut(s) 168, 321
Sau96I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 620, 1067, 1132
SchI GAGTC 2 cut(s) 377, 731
ScrFI CCNGG 4 cut(s) 214, 296, 504, 696
SduI GDGCHC 5 cut(s) 14, 162, 534, 657, 1058
SfaNI GCATC 3 cut(s) 222, 618, 810
SfcI CTRYAG 3 cut(s) 147, 413, 1018
SinI GGWCC 4 cut(s) 89, 442, 620, 1067
SmiMI CAYNNNNRTG 4 cut(s) 25, 305, 750, 870
Sse9I AATT 3 cut(s) 779, 946, 979
SsiI CCGC 5 cut(s) 15, 129, 248, 344, 393
SstI GAGCTC 2 cut(s) 14, 1058
StyD4I CCNGG 4 cut(s) 212, 294, 502, 694
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 4 cut(s) 39, 196, 1022, 1062
TaiI ACGT 4 cut(s) 338, 381, 549, 642
TaqI TCGA 3 cut(s) 207, 320, 672
TasI AATT 3 cut(s) 779, 946, 979
TatI WGTACW 2 cut(s) 423, 1026
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 6 cut(s) 145, 600, 757, 991, 1027, 1065
TseFI GTSAC 2 cut(s) 140, 331
TseI GCWGC 2 cut(s) 361, 886
Tsp45I GTSAC 2 cut(s) 140, 331
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 6 cut(s) 145, 600, 757, 991, 1027, 1065
VpaK11BI GGWCC 4 cut(s) 89, 442, 620, 1067
XapI RAATTY 1 cut(s) 979
XmiI GTMKAC 2 cut(s) 153, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.