Rh5CG116500

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010097
Physical Location & Seq
Reverse (-)
9634544 .. 9638754
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG116500.1

Sequence Viewer

Length: 951 bp
ATGCTCCTCATCGTACCGCAAGGTAGACACGCAGTCCGGCTCGGAAACGACGCCGAAGTGAGCCAGGACATCAAGGTGGAGAAGGGGTCGATCTACTCCGTCACGTTCAGCGCGGCTCGCACTTGCGCGCAGCTGGAGTCGCTGAACGTGTCGGTGCTTCCCGCGTCGCAGACGATAGACCTGCAGACATTGTACAGCGTGCAGGGCTGGGACCCGTACGCGTGGGCTTTTGAGGCCGAAGAGGATGATGTGAAGCTGGTGTTCAGGAACCCAGGGATGGAGGACGACCCTACTTGTGGGCCCATCATTGATGACGTTGCTATCAAGAAGCTCTTTACCCCTGATAAGCCCAAAAACAATGCAGTGGTTAATGGTGATTTTGAGGAAGGTCCATGGATGCTTGCAAACGTCTCTTTAGGAGTGCTCCTTCCTACAAACCTCGACGAAGAAACATCGTCCTTACCGGGTTGGAATGTTGAATCCAATCGGGCTGTTCGTTACATTGACTCCTACCACTTCAGTGTGCCACAGGGCAAGAGAGCGATAGAATTGCTTTCTGGGAAGGAAGGCATCATTTCCCAAATGGTTGAAACTAAACCGAACAAGCCATATACCCTCACCTTCTCTTTAGGCCATGCCAATGACAAATGCAAGCAGCCTCTTGCTGTCATGGCCTTTGCCGGCGACCAAGCCCAAAATGTCCATTACACCCCTAATTCCAACAGCACATTCCAAAGTGCCAATGTGAATTTCACTGCCAAAGCTGAGAGGTCAAGGATTGCATTCTACAGTGTGTACTATAACACAAGGACTGATGATATGAGCTCACTGTGTGGACCTGTGGTTGATGATGTTAGGGTTTGGTTTTCAGGGTCAAGGAGAAATGGGCTTGGAGGGTTGGGCCTAAGGCTTGGGGTGGCTTTGTGGGTTTTTGTGTTGTTTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

316

Amino Acids

34.84

Weight (kDa)

5.11

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 1 - 109 2e-46 Protein of unknown function (DUF642)
DUF642 PF04862 122 - 287 2.7e-20 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29980 AT1G29980 AT2G34510 AT2G34510
fragaria_vesca FvH4_3g05680
malus_domestica MD05G1284600.v1.1 MD10G1263000.v1.1
prunus_persica Prupe.4G079800_v2.0.a1
pyrus_communis pycom05g26390 pycom10g21920
rosa_chinensis RchiOBHm_Chr5g0013971
rosa_laevigata RLG00000032056
rosa_multiflora Rmu_co8449395.1_g000001
rosa_roxburghii Rroxscaffold_1G00062750
rosa_rugosa Rorug05G0013600 Rorug05G0013700
rosa_samantha Rh5AG107900 Rh5BG104600 Rh5CG116500 Rh5DG103200
rosa_wichuraiana Rw5G009430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 25
AccII CGCG 4 cut(s) 113, 128, 164, 221
AciI CCGC 3 cut(s) 17, 113, 162
AcsI RAATTY 1 cut(s) 748
AcuI CTGAAG 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 833
AfaI GTAC 4 cut(s) 15, 194, 218, 797
AfiI CCNNNNNNNGG 2 cut(s) 277, 296
AflIII ACRYGT 2 cut(s) 147, 219
AgsI TTSAA 2 cut(s) 479, 590
AhdI GACNNNNNGTC 1 cut(s) 32
AjnI CCWGG 2 cut(s) 63, 271
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 734, 745, 766
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 5 cut(s) 133, 256, 331, 764, 825
AluI AGCT 5 cut(s) 133, 256, 331, 764, 825
Alw21I GWGCWC 2 cut(s) 426, 827
Alw26I GTCTC 1 cut(s) 415
AoxI GGCC 5 cut(s) 234, 299, 631, 672, 901
ApaI GGGCCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 130, 655
ApoI RAATTY 1 cut(s) 748
AspLEI GCGC 3 cut(s) 113, 128, 130
AspS9I GGNCC 6 cut(s) 211, 299, 300, 389, 836, 901
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 386, 610
AvaII GGWCC 3 cut(s) 211, 389, 836
AxyI CCTNAGG 1 cut(s) 905
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 2 cut(s) 303, 827
Bbv12I GWGCWC 2 cut(s) 426, 827
BbvI GCAGC 2 cut(s) 142, 667
BccI CCATC 2 cut(s) 271, 311
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 532, 566
BciT130I CCWGG 2 cut(s) 65, 273
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 415
BfmI CTRYAG 2 cut(s) 182, 787
BfuAI ACCTGC 1 cut(s) 189
BisI GCNGC 3 cut(s) 114, 131, 656
BlsI GCNGC 3 cut(s) 115, 132, 657
Bme1390I CCNGG 3 cut(s) 65, 273, 465
Bme18I GGWCC 3 cut(s) 211, 389, 836
BmeRI GACNNNNNGTC 1 cut(s) 32
BmgT120I GGNCC 6 cut(s) 211, 299, 300, 389, 836, 901
BmiI GGNNCC 4 cut(s) 212, 213, 269, 301
BmrFI CCNGG 3 cut(s) 65, 273, 465
BmsI GCATC 2 cut(s) 387, 579
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 271, 272, 392
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 296
Bse118I RCCGGY 1 cut(s) 680
Bse21I CCTNAGG 1 cut(s) 905
BseBI CCWGG 2 cut(s) 65, 273
BseDI CCNNGG 3 cut(s) 271, 272, 392
BseGI GGATG 3 cut(s) 250, 282, 402
BseLI CCNNNNNNNGG 2 cut(s) 277, 296
BseMII CTCAG 1 cut(s) 756
BsePI GCGCGC 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 2 cut(s) 142, 667
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 4 cut(s) 113, 128, 164, 221
BshFI GGCC 5 cut(s) 236, 301, 633, 674, 903
BsiHKAI GWGCWC 2 cut(s) 426, 827
BsiSI CCGG 3 cut(s) 37, 464, 681
BsiWI CGTACG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 277, 296
BsmAI GTCTC 1 cut(s) 415
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 5 cut(s) 236, 301, 633, 674, 903
Bsp120I GGGCCC 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 303, 426, 827
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 3 cut(s) 17, 113, 162
BspANI GGCC 5 cut(s) 236, 301, 633, 674, 903
BspCNI CTCAG 1 cut(s) 757
BspFNI CGCG 4 cut(s) 113, 128, 164, 221
BspLI GGNNCC 4 cut(s) 212, 213, 269, 301
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 680
BsrGI TGTACA 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 271, 272, 392
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 65, 273
Bst4CI ACNGT 2 cut(s) 791, 831
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 6 cut(s) 118, 128, 200, 402, 653, 682
BstDEI CTNAG 2 cut(s) 765, 905
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 3 cut(s) 250, 282, 402
BstFNI CGCG 4 cut(s) 113, 128, 164, 221
BstHHI GCGC 3 cut(s) 113, 128, 130
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 117, 139, 204, 233, 671
BstNI CCWGG 2 cut(s) 65, 273
BstSCI CCNGG 3 cut(s) 63, 271, 463
BstSFI CTRYAG 2 cut(s) 182, 787
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 4 cut(s) 113, 128, 164, 221
BstV1I GCAGC 2 cut(s) 142, 667
Bsu36I CCTNAGG 1 cut(s) 905
BsuRI GGCC 5 cut(s) 236, 301, 633, 674, 903
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 3 cut(s) 250, 282, 402
BtsI GCAGTG 2 cut(s) 369, 753
BtsIMutI CAGTG 5 cut(s) 369, 526, 753, 796, 827
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 6 cut(s) 118, 128, 200, 402, 653, 682
CfoI GCGC 3 cut(s) 113, 128, 130
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 6 cut(s) 211, 299, 300, 389, 836, 901
CseI GACGC 2 cut(s) 59, 153
Csp6I GTAC 4 cut(s) 14, 193, 217, 796
CviAII CATG 3 cut(s) 393, 635, 670
CviQI GTAC 4 cut(s) 14, 193, 217, 796
DdeI CTNAG 2 cut(s) 765, 905
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraIII CACNNNGTG 1 cut(s) 833
DriI GACNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 825
Eco130I CCWWGG 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 303, 827
Eco47I GGWCC 3 cut(s) 211, 389, 836
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 502
Eco81I CCTNAGG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 63, 271
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 2 cut(s) 303, 827
ErhI CCWWGG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 3 cut(s) 396, 638, 673
FaiI YATR 7 cut(s) 394, 610, 612, 636, 671, 801, 821
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 224
FatI CATG 3 cut(s) 392, 634, 669
FauI CCCGC 1 cut(s) 169
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 114, 131, 656
FokI GGATG 3 cut(s) 257, 289, 409
FriOI GRGCYC 2 cut(s) 303, 827
Fsp4HI GCNGC 3 cut(s) 114, 131, 656
GlaI GCGC 3 cut(s) 112, 127, 129
GluI GCNGC 3 cut(s) 114, 131, 656
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 5 cut(s) 236, 301, 633, 674, 903
HapII CCGG 3 cut(s) 37, 464, 681
HgaI GACGC 2 cut(s) 59, 153
HhaI GCGC 3 cut(s) 113, 128, 130
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 3 cut(s) 396, 638, 673
Hin6I GCGC 3 cut(s) 111, 126, 128
HinP1I GCGC 3 cut(s) 111, 126, 128
HinfI GANTC 3 cut(s) 137, 479, 506
HpaII CCGG 3 cut(s) 37, 464, 681
HphI GGTGA 2 cut(s) 386, 610
Hpy166II GTNNAC 3 cut(s) 26, 796, 836
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 265, 325
Hpy8I GTNNAC 3 cut(s) 26, 796, 836
Hpy99I CGWCG 3 cut(s) 53, 169, 446
HpyAV CCTTC 6 cut(s) 76, 380, 437, 556, 560, 631
HpyCH4III ACNGT 2 cut(s) 791, 831
HpyCH4IV ACGT 4 cut(s) 104, 147, 315, 408
HpyCH4V TGCA 6 cut(s) 184, 202, 362, 404, 651, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 139, 204, 233, 671
HpyF3I CTNAG 2 cut(s) 765, 905
HpySE526I ACGT 4 cut(s) 104, 147, 315, 408
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 396, 638, 673
HspAI GCGC 3 cut(s) 111, 126, 128
KflI GGGWCCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 9, 429
Lsp1109I GCAGC 2 cut(s) 142, 667
LweI GCATC 2 cut(s) 387, 579
MaeII ACGT 4 cut(s) 104, 147, 315, 408
MaeIII GTNAC 2 cut(s) 100, 497
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 251, 458
MhlI GDGCHC 3 cut(s) 303, 426, 827
MluCI AATT 3 cut(s) 548, 715, 748
MluI ACGCGT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 146, 500
MmeI TCCRAC 2 cut(s) 449, 744
MroNI GCCGGC 1 cut(s) 680
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 3 cut(s) 74, 519, 639
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 3 cut(s) 37, 464, 681
MspR9I CCNGG 3 cut(s) 65, 273, 465
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 65, 273
MvnI CGCG 4 cut(s) 113, 128, 164, 221
MwoI GCNNNNNNNGC 5 cut(s) 117, 139, 204, 233, 671
NaeI GCCGGC 1 cut(s) 682
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 1 cut(s) 392
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 680
NlaIII CATG 3 cut(s) 396, 638, 673
NlaIV GGNNCC 4 cut(s) 212, 213, 269, 301
NmuCI GTSAC 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 519
PasI CCCWGGG 1 cut(s) 272
PauI GCGCGC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 1 cut(s) 782
PdiI GCCGGC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 479
Pfl23II CGTACG 1 cut(s) 216
PkrI GCNGC 3 cut(s) 115, 132, 657
PleI GAGTC 2 cut(s) 145, 500
PpsI GAGTC 2 cut(s) 145, 500
PpuMI RGGWCCY 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 827
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 63, 271
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 2 cut(s) 63, 271
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 4 cut(s) 212, 213, 269, 301
PspOMI GGGCCC 1 cut(s) 299
PspPI GGNCC 6 cut(s) 211, 299, 300, 389, 836, 901
PspPPI RGGWCCY 1 cut(s) 211
PstI CTGCAG 1 cut(s) 186
PteI GCGCGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 4 cut(s) 15, 194, 218, 797
RsaNI GTAC 4 cut(s) 14, 193, 217, 796
RseI CAYNNNNRTG 3 cut(s) 74, 519, 639
SacI GAGCTC 1 cut(s) 827
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 114, 131, 656
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 6 cut(s) 211, 299, 300, 389, 836, 901
SchI GAGTC 2 cut(s) 146, 500
ScrFI CCNGG 3 cut(s) 65, 273, 465
SduI GDGCHC 3 cut(s) 303, 426, 827
SfaNI GCATC 2 cut(s) 387, 579
SfcI CTRYAG 2 cut(s) 182, 787
SinI GGWCC 3 cut(s) 211, 389, 836
SmiMI CAYNNNNRTG 3 cut(s) 74, 519, 639
Sse9I AATT 3 cut(s) 548, 715, 748
SsiI CCGC 3 cut(s) 17, 113, 162
SstI GAGCTC 1 cut(s) 827
StyD4I CCNGG 3 cut(s) 63, 271, 463
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 791, 831
TaiI ACGT 4 cut(s) 107, 150, 318, 411
TaqI TCGA 2 cut(s) 89, 441
TasI AATT 3 cut(s) 548, 715, 748
TatI WGTACW 2 cut(s) 192, 795
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 5 cut(s) 369, 526, 760, 796, 834
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 130, 655
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 5 cut(s) 369, 526, 760, 796, 834
VpaK11BI GGWCC 3 cut(s) 211, 389, 836
XapI RAATTY 1 cut(s) 748
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.