Rmu_co8449395.1_g000001

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449395.1
OG0010097
Physical Location & Seq
Reverse (-)
275 .. 1684
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449395.1_g000001.1.cds

Sequence Viewer

Length: 881 bp
tcaaggtggagaaggggtcgatctactccgtcacgttcagcgcggctcgcacttgcgcgcagctggagtcgctgaacgtgtcggtgctgcccgcgtcgcagacgatagacctgcagacattgtacagcgtgcagggctgggacccgtacgcgtgggcttttgaggccgaagaggatgatgtgaagctggtgttcaggaacccagggatggaggacgaccctacttgtgggcccatcattgatgacgttgctatcaagaagctctttacccctgataagcccaaaaacaatgcagtggttaatggtgattttgaggaaggtccatggatgcttgcaaacgtctctttaggagtgctccttcctacaaacctcgacgaagaaacatcgtccttaccgggttggaatgttgaatccaatcgggctgttcgttacattgactcctaccacttcagtgtgccacagggcaagagagcgatagaattgctttctgggaaggaaggcatcatttcccaaatggttgaaactaaaccgaacaagccatataccctcaccttctctttaggccatgccaatgacaaatgcaagcagcctcttgctgtcatggcctttgccggcgaccaagcccaaaatgtccattacacccctaattccaacagcacattccaaagtgccaatgtgaatttcactgccaaagctgagaggtcaaggattgcattctacagtgtgtactataacacaaggactgatgatatgagctcactgtgtggacctgtggttgatgatgttagggtttggttttcagggtcaaggagaaatgggcttggagggttgggcctaaggcttggggtggctttgtgggtttttgtgttgtttttggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

5.09

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29980 AT1G29980 AT2G34510 AT2G34510
fragaria_vesca FvH4_3g05680
malus_domestica MD05G1284600.v1.1 MD10G1263000.v1.1
prunus_persica Prupe.4G079800_v2.0.a1
pyrus_communis pycom05g26390 pycom10g21920
rosa_chinensis RchiOBHm_Chr5g0013971
rosa_laevigata RLG00000032056
rosa_multiflora Rmu_co8449395.1_g000001
rosa_roxburghii Rroxscaffold_1G00062750
rosa_rugosa Rorug05G0013600 Rorug05G0013700
rosa_samantha Rh5AG107900 Rh5BG104600 Rh5CG116500 Rh5DG103200
rosa_wichuraiana Rw5G009430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccII CGCG 4 cut(s) 43, 58, 94, 151
AciI CCGC 2 cut(s) 43, 92
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 3 cut(s) 124, 148, 727
AfiI CCNNNNNNNGG 2 cut(s) 207, 226
AflIII ACRYGT 2 cut(s) 77, 149
AgsI TTSAA 2 cut(s) 409, 520
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 4 cut(s) 643, 664, 675, 696
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 5 cut(s) 63, 186, 261, 694, 755
AluI AGCT 5 cut(s) 63, 186, 261, 694, 755
Alw21I GWGCWC 2 cut(s) 356, 757
Alw26I GTCTC 1 cut(s) 345
AoxI GGCC 5 cut(s) 164, 229, 561, 602, 831
ApaI GGGCCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 60, 87, 585
ApoI RAATTY 1 cut(s) 678
AspLEI GCGC 3 cut(s) 43, 58, 60
AspS9I GGNCC 6 cut(s) 141, 229, 230, 319, 766, 831
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 316, 540
AvaII GGWCC 3 cut(s) 141, 319, 766
AxyI CCTNAGG 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 233, 757
Bbv12I GWGCWC 2 cut(s) 356, 757
BbvI GCAGC 3 cut(s) 72, 74, 597
BccI CCATC 2 cut(s) 201, 241
BcgI CGANNNNNNTGC 4 cut(s) 93, 127, 462, 496
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 345
BfmI CTRYAG 2 cut(s) 112, 717
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 4 cut(s) 44, 61, 88, 586
BlsI GCNGC 4 cut(s) 45, 62, 89, 587
Bme1390I CCNGG 2 cut(s) 203, 395
Bme18I GGWCC 3 cut(s) 141, 319, 766
BmgT120I GGNCC 6 cut(s) 141, 229, 230, 319, 766, 831
BmiI GGNNCC 4 cut(s) 142, 143, 199, 231
BmrFI CCNGG 2 cut(s) 203, 395
BmsI GCATC 2 cut(s) 317, 509
BpmI CTGGAG 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 201, 202, 322
BsaXI ACNNNNNCTCC 3 cut(s) 31, 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 226
Bse118I RCCGGY 1 cut(s) 610
Bse21I CCTNAGG 1 cut(s) 835
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 201, 202, 322
BseGI GGATG 3 cut(s) 180, 212, 332
BseLI CCNNNNNNNGG 2 cut(s) 207, 226
BseMII CTCAG 1 cut(s) 686
BsePI GCGCGC 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 3 cut(s) 72, 74, 597
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 4 cut(s) 43, 58, 94, 151
BshFI GGCC 5 cut(s) 166, 231, 563, 604, 833
BsiHKAI GWGCWC 2 cut(s) 356, 757
BsiSI CCGG 2 cut(s) 394, 611
BsiWI CGTACG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 207, 226
BsmAI GTCTC 1 cut(s) 345
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 5 cut(s) 166, 231, 563, 604, 833
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 233, 356, 757
Bsp1407I TGTACA 1 cut(s) 122
Bsp143I GATC 1 cut(s) 20
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 2 cut(s) 43, 92
BspANI GGCC 5 cut(s) 166, 231, 563, 604, 833
BspCNI CTCAG 1 cut(s) 687
BspFNI CGCG 4 cut(s) 43, 58, 94, 151
BspLI GGNNCC 4 cut(s) 142, 143, 199, 231
BspMAI CTGCAG 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 610
BsrGI TGTACA 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 3 cut(s) 201, 202, 322
BssHII GCGCGC 1 cut(s) 56
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 721, 761
Bst6I CTCTTC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 122
BstC8I GCNNGC 7 cut(s) 48, 58, 92, 130, 332, 583, 612
BstDEI CTNAG 2 cut(s) 695, 835
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 3 cut(s) 180, 212, 332
BstFNI CGCG 4 cut(s) 43, 58, 94, 151
BstHHI GCGC 3 cut(s) 43, 58, 60
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 6 cut(s) 47, 69, 96, 134, 163, 601
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 201, 393
BstSFI CTRYAG 2 cut(s) 112, 717
BstSLI GKGCMC 1 cut(s) 233
BstUI CGCG 4 cut(s) 43, 58, 94, 151
BstV1I GCAGC 3 cut(s) 72, 74, 597
Bsu36I CCTNAGG 1 cut(s) 835
BsuRI GGCC 5 cut(s) 166, 231, 563, 604, 833
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 3 cut(s) 180, 212, 332
BtsI GCAGTG 2 cut(s) 299, 683
BtsIMutI CAGTG 5 cut(s) 299, 456, 683, 726, 757
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 7 cut(s) 48, 58, 92, 130, 332, 583, 612
CfoI GCGC 3 cut(s) 43, 58, 60
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 6 cut(s) 141, 229, 230, 319, 766, 831
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 123, 147, 726
CviAII CATG 3 cut(s) 323, 565, 600
CviQI GTAC 3 cut(s) 123, 147, 726
DdeI CTNAG 2 cut(s) 695, 835
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraIII CACNNNGTG 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 233, 757
Eco47I GGWCC 3 cut(s) 141, 319, 766
Eco53kI GAGCTC 1 cut(s) 755
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 835
EcoICRI GAGCTC 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 233, 757
ErhI CCWWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 3 cut(s) 326, 568, 603
FaiI YATR 7 cut(s) 324, 540, 542, 566, 601, 731, 751
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 322, 564, 599
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 44, 61, 88, 586
FokI GGATG 3 cut(s) 187, 219, 339
FriOI GRGCYC 2 cut(s) 233, 757
Fsp4HI GCNGC 4 cut(s) 44, 61, 88, 586
GlaI GCGC 3 cut(s) 42, 57, 59
GluI GCNGC 4 cut(s) 44, 61, 88, 586
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 5 cut(s) 166, 231, 563, 604, 833
HapII CCGG 2 cut(s) 394, 611
HgaI GACGC 1 cut(s) 83
HhaI GCGC 3 cut(s) 43, 58, 60
Hin1II CATG 3 cut(s) 326, 568, 603
Hin6I GCGC 3 cut(s) 41, 56, 58
HinP1I GCGC 3 cut(s) 41, 56, 58
HinfI GANTC 3 cut(s) 67, 409, 436
HpaII CCGG 2 cut(s) 394, 611
HphI GGTGA 2 cut(s) 316, 540
Hpy166II GTNNAC 2 cut(s) 726, 766
Hpy188III TCNNGA 2 cut(s) 195, 255
Hpy8I GTNNAC 2 cut(s) 726, 766
Hpy99I CGWCG 2 cut(s) 99, 376
HpyAV CCTTC 6 cut(s) 6, 310, 367, 486, 490, 561
HpyCH4III ACNGT 2 cut(s) 721, 761
HpyCH4IV ACGT 4 cut(s) 34, 77, 245, 338
HpyCH4V TGCA 6 cut(s) 114, 132, 292, 334, 581, 712
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 69, 96, 134, 163, 601
HpyF3I CTNAG 2 cut(s) 695, 835
HpySE526I ACGT 4 cut(s) 34, 77, 245, 338
Hsp92II CATG 3 cut(s) 326, 568, 603
HspAI GCGC 3 cut(s) 41, 56, 58
KflI GGGWCCC 1 cut(s) 141
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 3 cut(s) 72, 74, 597
LweI GCATC 2 cut(s) 317, 509
MaeII ACGT 4 cut(s) 34, 77, 245, 338
MaeIII GTNAC 2 cut(s) 30, 427
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 2 cut(s) 181, 388
MhlI GDGCHC 3 cut(s) 233, 356, 757
MluCI AATT 3 cut(s) 478, 645, 678
MluI ACGCGT 1 cut(s) 149
MlyI GAGTC 2 cut(s) 76, 430
MmeI TCCRAC 2 cut(s) 379, 674
MnlI CCTC 9 cut(s) 156, 165, 204, 306, 379, 556, 599, 692, 817
MroNI GCCGGC 1 cut(s) 610
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 2 cut(s) 449, 569
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 2 cut(s) 394, 611
MspR9I CCNGG 2 cut(s) 203, 395
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 4 cut(s) 43, 58, 94, 151
MwoI GCNNNNNNNGC 6 cut(s) 47, 69, 96, 134, 163, 601
NaeI GCCGGC 1 cut(s) 612
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 322
NdeII GATC 1 cut(s) 20
NgoMIV GCCGGC 1 cut(s) 610
NlaIII CATG 3 cut(s) 326, 568, 603
NlaIV GGNNCC 4 cut(s) 142, 143, 199, 231
NmuCI GTSAC 1 cut(s) 30
OliI CACNNNNGTG 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 202
PauI GCGCGC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PctI GAATGC 1 cut(s) 712
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 409
Pfl23II CGTACG 1 cut(s) 146
PkrI GCNGC 4 cut(s) 45, 62, 89, 587
PleI GAGTC 2 cut(s) 75, 430
PpsI GAGTC 2 cut(s) 75, 430
PpuMI RGGWCCY 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 201
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 4 cut(s) 142, 143, 199, 231
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 6 cut(s) 141, 229, 230, 319, 766, 831
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 1 cut(s) 116
PteI GCGCGC 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 3 cut(s) 124, 148, 727
RsaNI GTAC 3 cut(s) 123, 147, 726
RseI CAYNNNNRTG 2 cut(s) 449, 569
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 4 cut(s) 44, 61, 88, 586
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 6 cut(s) 141, 229, 230, 319, 766, 831
SchI GAGTC 2 cut(s) 76, 430
ScrFI CCNGG 2 cut(s) 203, 395
SduI GDGCHC 3 cut(s) 233, 356, 757
SfaNI GCATC 2 cut(s) 317, 509
SfcI CTRYAG 2 cut(s) 112, 717
SinI GGWCC 3 cut(s) 141, 319, 766
SmiMI CAYNNNNRTG 2 cut(s) 449, 569
Sse9I AATT 3 cut(s) 478, 645, 678
SsiI CCGC 2 cut(s) 43, 92
SstI GAGCTC 1 cut(s) 757
StyD4I CCNGG 2 cut(s) 201, 393
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 721, 761
TaiI ACGT 4 cut(s) 37, 80, 248, 341
TaqI TCGA 2 cut(s) 19, 371
TasI AATT 3 cut(s) 478, 645, 678
TatI WGTACW 2 cut(s) 122, 725
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 5 cut(s) 299, 456, 690, 726, 764
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 3 cut(s) 60, 87, 585
Tsp45I GTSAC 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 5 cut(s) 299, 456, 690, 726, 764
VpaK11BI GGWCC 3 cut(s) 141, 319, 766
XapI RAATTY 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.