Prupe.4G079800_v2.0.a1

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010097
Physical Location & Seq
Reverse (-)
3866913 .. 3870984
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G079800.1

Sequence Viewer

Length: 1185 bp
ATGGCTCGGAGCTCCACATTCCCCAAATGGGTCTTACCGATTATGCTTCTTCTTGGCCGTTTGGCTACTAAAATCTCAGCAGAAGATGGGCCAGTGCCAAATGGTGATTTTGAAATGACCCCATCAGGCGGCTTCTCAAACGAGGCTATAGTAGATGGGCCCATGGGGATCCCCAGCTGGAAATCAAACGGCACCGTTGAGCTTGTGGAGTCGGGGCAGAAACAGGGTGGGATGATCCTCATCGTACCGCAAGGTAGACACGCAGTGAGGCTGGGAAACGACGCCGAAATAAGCCAGCAAGTGAAGGTGGAGAAAGGCTCCATCTACTCCGTCACGTTCAGTGCGGCTCGCACTTGCGCACAGCTGGAGTCATTGAACGTGTCAGTGCCACCTGCATCGCAGACGATAGACCTGCAGACCTTGTACAACGTGCAAGGGTGGGACCCTTACGCGTGGGCTTTCGCGGCTGAGGAGGATGATGCGATGTTGGTCTTCAGGAATCCCGGCATGGAAGATGACCCCACCTGTGGGCCCATCATTGATGATGTTGCTATCAAGAAGCTCTTTACCCCTGATAGGCCCAAAGACAACGCAGTGATCAATGGTGATTTTGAGGAAGGTCCATGGATGTTCGCAAACATCTCGCTAGGGGTGCTGCTTCCCACCAACCTCGACGAAGAAACATCCTCGTTACCCGGTTGGATCGTTGAGTCCAACCGTGCTGTTAGGTACATCGACTCCTACCATTTTACTGTGCCGCAAGGCAAGCGAGCCATTGAATTGCTATCTGGGAAGGAAGGCATTATTTCCCAAATGGTTGAAACTTCCCCCAACAAGCCATACACCCTAACCTTCTCTTTAGGCCATGCTAATGACAAATGCAAGCAGCCTCTTGCTGTCATGGCCTTTGCTGGTGACCAAGCCCAAAATGTCCATTATACCCCTAATTCCAACAGCACATTCCAAAGTGCCAATGTGAATTTCACGGCCAGAGCTGAGAGGACAAGGATTGCATTCTACAGTGTGTATTATAACACCAGGACTGACGACATGAGCTCGCTATGTGGGCCTGTGGTGGATGATGTCCGGGTTTGGTTTTCTGGGTCTTGGAGAAATGGGTTTGGAGGATTGGGAAGGATGACACTTGGGCTTGCTTTTTGGGTGCTTGTTTGGGTTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

395

Amino Acids

43.18

Weight (kDa)

4.89

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29980 AT1G29980 AT2G34510 AT2G34510
fragaria_vesca FvH4_3g05680
malus_domestica MD05G1284600.v1.1 MD10G1263000.v1.1
prunus_persica Prupe.4G079800_v2.0.a1
pyrus_communis pycom05g26390 pycom10g21920
rosa_chinensis RchiOBHm_Chr5g0013971
rosa_laevigata RLG00000032056
rosa_multiflora Rmu_co8449395.1_g000001
rosa_roxburghii Rroxscaffold_1G00062750
rosa_rugosa Rorug05G0013600 Rorug05G0013700
rosa_samantha Rh5AG107900 Rh5BG104600 Rh5CG116500 Rh5DG103200
rosa_wichuraiana Rw5G009430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AarI CACCTGC 1 cut(s) 400
Acc16I TGCGCA 1 cut(s) 358
Acc36I ACCTGC 2 cut(s) 400, 420
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 256
AccII CGCG 2 cut(s) 452, 464
AciI CCGC 5 cut(s) 129, 248, 344, 464, 758
AclWI GGATC 4 cut(s) 163, 176, 229, 710
AcoI YGGCCR 2 cut(s) 55, 987
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 3 cut(s) 246, 425, 731
AfiI CCNNNNNNNGG 5 cut(s) 28, 128, 527, 528, 576
AflIII ACRYGT 2 cut(s) 378, 450
AgsI TTSAA 4 cut(s) 113, 376, 779, 821
AjnI CCWGG 1 cut(s) 1037
AjuI GAANNNNNNNTTGG 4 cut(s) 944, 965, 976, 997
AluBI AGCT 7 cut(s) 12, 177, 202, 364, 562, 995, 1056
AluI AGCT 7 cut(s) 12, 177, 202, 364, 562, 995, 1056
Alw21I GWGCWC 2 cut(s) 14, 1058
AlwI GGATC 4 cut(s) 163, 176, 229, 710
AoxI GGCC 9 cut(s) 55, 89, 158, 530, 578, 862, 903, 987, 1067
ApaI GGGCCC 2 cut(s) 162, 534
ApeKI GCWGC 2 cut(s) 655, 886
ApoI RAATTY 1 cut(s) 979
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 579, 620, 1067
AsuC2I CCSGG 3 cut(s) 504, 696, 1088
AsuHPI GGTGA 3 cut(s) 116, 617, 926
AvaII GGWCC 2 cut(s) 442, 620
BaeGI GKGCMC 2 cut(s) 162, 534
BamHI GGATCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 4 cut(s) 14, 162, 534, 1058
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 14, 1058
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 642, 898
BccI CCATC 5 cut(s) 80, 130, 149, 329, 542
BceAI ACGGC 3 cut(s) 42, 205, 1002
BcgI CGANNNNNNTGC 4 cut(s) 394, 428, 624, 658
BciT130I CCWGG 1 cut(s) 1039
BclI TGATCA 1 cut(s) 597
BcnI CCSGG 3 cut(s) 504, 696, 1088
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 3 cut(s) 147, 413, 1018
BfuAI ACCTGC 2 cut(s) 400, 420
BisI GCNGC 6 cut(s) 130, 345, 465, 656, 758, 887
BlsI GCNGC 6 cut(s) 131, 346, 466, 657, 759, 888
Bme1390I CCNGG 4 cut(s) 504, 696, 1039, 1088
Bme18I GGWCC 2 cut(s) 442, 620
BmgT120I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 579, 620, 1067
BmiI GGNNCC 7 cut(s) 160, 170, 193, 319, 443, 444, 532
BmrFI CCNGG 4 cut(s) 504, 696, 1039, 1088
BmsI GCATC 2 cut(s) 404, 469
BpiI GAAGAC 1 cut(s) 484
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 468
BpuMI CCSGG 3 cut(s) 504, 696, 1088
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 162, 623
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 128, 527, 528, 576
Bse1I ACTGG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 1039
BseDI CCNNGG 2 cut(s) 162, 623
BseGI GGATG 6 cut(s) 237, 481, 633, 683, 1084, 1143
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 5 cut(s) 28, 128, 527, 528, 576
BseMII CTCAG 3 cut(s) 90, 459, 987
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 2 cut(s) 162, 534
BseXI GCAGC 2 cut(s) 642, 898
BseYI CCCAGC 2 cut(s) 173, 271
Bsh1236I CGCG 2 cut(s) 452, 464
BshFI GGCC 9 cut(s) 57, 91, 160, 532, 580, 864, 905, 989, 1069
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 14, 1058
BsiSI CCGG 3 cut(s) 504, 696, 1087
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 5 cut(s) 28, 128, 527, 528, 576
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 9 cut(s) 57, 91, 160, 532, 580, 864, 905, 989, 1069
Bsp120I GGGCCC 2 cut(s) 158, 530
Bsp1286I GDGCHC 4 cut(s) 14, 162, 534, 1058
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 4 cut(s) 168, 234, 597, 702
Bsp19I CCATGG 2 cut(s) 162, 623
BspACI CCGC 5 cut(s) 129, 248, 344, 464, 758
BspANI GGCC 9 cut(s) 57, 91, 160, 532, 580, 864, 905, 989, 1069
BspCNI CTCAG 3 cut(s) 89, 460, 988
BspFNI CGCG 2 cut(s) 452, 464
BspLI GGNNCC 7 cut(s) 160, 170, 193, 319, 443, 444, 532
BspMAI CTGCAG 1 cut(s) 417
BspMI ACCTGC 2 cut(s) 400, 420
BspPI GGATC 4 cut(s) 163, 176, 229, 710
BspT107I GGYRCC 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 162, 623
BssMI GATC 4 cut(s) 168, 234, 597, 702
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 162, 623
Bst2UI CCWGG 1 cut(s) 1039
Bst4CI ACNGT 4 cut(s) 196, 719, 754, 1022
BstACI GRCGYC 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 7 cut(s) 296, 349, 767, 771, 884, 1058, 1152
BstDEI CTNAG 3 cut(s) 76, 468, 996
BstDSI CCRYGG 2 cut(s) 162, 623
BstEII GGTNACC 1 cut(s) 914
BstF5I GGATG 6 cut(s) 237, 481, 633, 683, 1084, 1143
BstFNI CGCG 2 cut(s) 452, 464
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 4 cut(s) 171, 237, 600, 705
BstMBI GATC 4 cut(s) 168, 234, 597, 702
BstMWI GCNNNNNNNGC 5 cut(s) 464, 652, 766, 902, 1066
BstNI CCWGG 1 cut(s) 1039
BstPI GGTNACC 1 cut(s) 914
BstSCI CCNGG 4 cut(s) 502, 694, 1037, 1086
BstSFI CTRYAG 3 cut(s) 147, 413, 1018
BstSLI GKGCMC 2 cut(s) 162, 534
BstUI CGCG 2 cut(s) 452, 464
BstV1I GCAGC 2 cut(s) 642, 898
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 9 cut(s) 57, 91, 160, 532, 580, 864, 905, 989, 1069
BtgI CCRYGG 2 cut(s) 162, 623
BtgZI GCGATG 2 cut(s) 381, 497
BtsCI GGATG 6 cut(s) 237, 481, 633, 683, 1084, 1143
BtsI GCAGTG 2 cut(s) 270, 600
BtsIMutI CAGTG 6 cut(s) 99, 270, 346, 390, 600, 1027
BveI ACCTGC 2 cut(s) 400, 420
Cac8I GCNNGC 7 cut(s) 296, 349, 767, 771, 884, 1058, 1152
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 579, 620, 1067
CseI GACGC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 245, 424, 730
CviAII CATG 6 cut(s) 163, 508, 624, 866, 901, 1051
CviQI GTAC 3 cut(s) 245, 424, 730
DdeI CTNAG 3 cut(s) 76, 468, 996
DpnI GATC 4 cut(s) 170, 236, 599, 704
DpnII GATC 4 cut(s) 168, 234, 597, 702
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 55, 987
Ecl136II GAGCTC 2 cut(s) 12, 1056
Eco130I CCWWGG 2 cut(s) 162, 623
Eco24I GRGCYC 4 cut(s) 14, 162, 534, 1058
Eco47I GGWCC 2 cut(s) 442, 620
Eco53kI GAGCTC 2 cut(s) 12, 1056
Eco57I CTGAAG 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 914
EcoICRI GAGCTC 2 cut(s) 12, 1056
EcoO109I RGGNCCY 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 1037
EcoT14I CCWWGG 2 cut(s) 162, 623
EcoT38I GRGCYC 4 cut(s) 14, 162, 534, 1058
ErhI CCWWGG 2 cut(s) 162, 623
FaeI CATG 6 cut(s) 166, 511, 627, 869, 904, 1054
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 455
FatI CATG 6 cut(s) 162, 507, 623, 865, 900, 1050
FbaI TGATCA 1 cut(s) 597
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 6 cut(s) 130, 345, 465, 656, 758, 887
FokI GGATG 6 cut(s) 244, 488, 640, 670, 1091, 1150
FriOI GRGCYC 4 cut(s) 14, 162, 534, 1058
Fsp4HI GCNGC 6 cut(s) 130, 345, 465, 656, 758, 887
FspBI CTAG 1 cut(s) 647
FspI TGCGCA 1 cut(s) 358
GlaI GCGC 1 cut(s) 358
GluI GCNGC 6 cut(s) 130, 345, 465, 656, 758, 887
GsaI CCCAGC 2 cut(s) 177, 275
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 9 cut(s) 57, 91, 160, 532, 580, 864, 905, 989, 1069
HapII CCGG 3 cut(s) 504, 696, 1087
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 6 cut(s) 166, 511, 627, 869, 904, 1054
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 5 cut(s) 209, 368, 499, 710, 737
HpaII CCGG 3 cut(s) 504, 696, 1087
HphI GGTGA 3 cut(s) 116, 617, 926
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 496, 556
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 2 cut(s) 284, 677
HpyAV CCTTC 6 cut(s) 298, 611, 787, 791, 862, 1128
HpyCH4III ACNGT 4 cut(s) 196, 719, 754, 1022
HpyCH4IV ACGT 3 cut(s) 335, 378, 429
HpyCH4V TGCA 5 cut(s) 395, 415, 433, 882, 1013
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 652, 766, 902, 1066
HpyF3I CTNAG 3 cut(s) 76, 468, 996
HpySE526I ACGT 3 cut(s) 335, 378, 429
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 6 cut(s) 166, 511, 627, 869, 904, 1054
HspAI GCGC 1 cut(s) 357
KflI GGGWCCC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 4 cut(s) 168, 234, 597, 702
LmnI GCTCC 3 cut(s) 9, 17, 323
Lsp1109I GCAGC 2 cut(s) 642, 898
LweI GCATC 2 cut(s) 404, 469
MaeI CTAG 1 cut(s) 647
MaeII ACGT 3 cut(s) 335, 378, 429
MaeIII GTNAC 3 cut(s) 331, 690, 914
MalI GATC 4 cut(s) 170, 236, 599, 704
MboI GATC 4 cut(s) 168, 234, 597, 702
MboII GAAGA 5 cut(s) 41, 95, 484, 524, 689
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 4 cut(s) 14, 162, 534, 1058
MluCI AATT 3 cut(s) 779, 946, 979
MluI ACGCGT 1 cut(s) 450
MlyI GAGTC 4 cut(s) 218, 377, 719, 731
MmeI TCCRAC 3 cut(s) 680, 738, 975
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 2 cut(s) 177, 364
MspI CCGG 3 cut(s) 504, 696, 1087
MspR9I CCNGG 4 cut(s) 504, 696, 1039, 1088
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 1 cut(s) 1039
MvnI CGCG 2 cut(s) 452, 464
MwoI GCNNNNNNNGC 5 cut(s) 464, 652, 766, 902, 1066
NciI CCSGG 3 cut(s) 504, 696, 1088
NcoI CCATGG 2 cut(s) 162, 623
NdeII GATC 4 cut(s) 168, 234, 597, 702
NlaIII CATG 6 cut(s) 166, 511, 627, 869, 904, 1054
NlaIV GGNNCC 7 cut(s) 160, 170, 193, 319, 443, 444, 532
NmuCI GTSAC 2 cut(s) 331, 914
NsbI TGCGCA 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 400
PctI GAATGC 1 cut(s) 1013
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 6 cut(s) 131, 346, 466, 657, 759, 888
PleI GAGTC 4 cut(s) 217, 376, 718, 731
PpsI GAGTC 4 cut(s) 217, 376, 718, 731
PpuMI RGGWCCY 1 cut(s) 442
PsiI TTATAA 1 cut(s) 1032
Psp124BI GAGCTC 2 cut(s) 14, 1058
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 1037
PspEI GGTNACC 1 cut(s) 914
PspFI CCCAGC 2 cut(s) 173, 271
PspGI CCWGG 1 cut(s) 1037
PspN4I GGNNCC 7 cut(s) 160, 170, 193, 319, 443, 444, 532
PspOMI GGGCCC 2 cut(s) 158, 530
PspPI GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 579, 620, 1067
PspPPI RGGWCCY 1 cut(s) 442
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 168
PvuII CAGCTG 2 cut(s) 177, 364
RsaI GTAC 3 cut(s) 246, 425, 731
RsaNI GTAC 3 cut(s) 245, 424, 730
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 2 cut(s) 14, 1058
SatI GCNGC 6 cut(s) 130, 345, 465, 656, 758, 887
Sau3AI GATC 4 cut(s) 168, 234, 597, 702
Sau96I GGNCC 9 cut(s) 89, 158, 159, 442, 530, 531, 579, 620, 1067
SchI GAGTC 4 cut(s) 218, 377, 719, 731
ScrFI CCNGG 4 cut(s) 504, 696, 1039, 1088
SduI GDGCHC 4 cut(s) 14, 162, 534, 1058
SfaNI GCATC 2 cut(s) 404, 469
SfcI CTRYAG 3 cut(s) 147, 413, 1018
SinI GGWCC 2 cut(s) 442, 620
SmiMI CAYNNNNRTG 1 cut(s) 870
Sse9I AATT 3 cut(s) 779, 946, 979
SsiI CCGC 5 cut(s) 129, 248, 344, 464, 758
SspMI CTAG 1 cut(s) 647
SstI GAGCTC 2 cut(s) 14, 1058
StyD4I CCNGG 4 cut(s) 502, 694, 1037, 1086
StyI CCWWGG 2 cut(s) 162, 623
TaaI ACNGT 4 cut(s) 196, 719, 754, 1022
TaiI ACGT 3 cut(s) 338, 381, 432
TaqI TCGA 2 cut(s) 672, 735
TasI AATT 3 cut(s) 779, 946, 979
TatI WGTACW 1 cut(s) 423
TauI GCSGC 4 cut(s) 132, 347, 467, 760
TfiI GAWTC 1 cut(s) 499
TscAI CASTG 6 cut(s) 99, 270, 346, 390, 600, 1027
TseFI GTSAC 2 cut(s) 331, 914
TseI GCWGC 2 cut(s) 655, 886
Tsp45I GTSAC 2 cut(s) 331, 914
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 6 cut(s) 99, 270, 346, 390, 600, 1027
VpaK11BI GGWCC 2 cut(s) 442, 620
XapI RAATTY 1 cut(s) 979
XmiI GTMKAC 1 cut(s) 256
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.