Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Reverse (-)

14866832 .. 14868881

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAATAATGATACATCAAAAAAGCTGGGAACTTTGGTTTCTGATGATGGACCAGTGAATGTATATGTATGGGACATGGACGAGACTCTTATCTTACTTAGATCTCTGTTAAATGGAACTTATGCTGAGTCTTTTAATGGCTCCAAAGATGTTAAAAGAGGTGTAGAGATTGGGAGGATGTGGGAGAAACACATACTTAAGATCTGTGACGATTTTTTCTTCTACGAGCAAGTTGAGGAATGCAATGAGCCATTTCTTGATTCATTGAGACAGTATGATGATGGAAAGGATCTTTCTCGGTATGAGTTCAAACAAGACGACTTTAGTACTCCTACTGATGACTTGAACAAGAGGAAACTTGCGTACAGGCATCGAGCTGTTGCGGAGAGATACGAAAAGGGTTTGTGTCCATTCATTGACAGCGAATCGATGAGTGGGTTGGATGAGTTGTATAATGTGACTGATGAATACACAGACCGGTGGCTTTCTTCGGCAAGGGCTTTCTTGGAGCAGTGTTCATGTGTGGAAGAGTCTAGTGATGGAACAAGTGCAATCGAACAAAGCTCTCAGGATATACATATTCTAGTGACTTCCGGGGCCCTCATACCGAGCCTCGTGAAATGCCTGCTTTTCCGGCTAGATACATTCCTAAGACATGAAAATGTGTACAGTTCAATAGATGTGGGGAAGCTCCAATGTTTCAAATGGATCAAGGAGCGTTTCAACCACCCAAAATTCAGATTCTGTGCGATCGGGGACGGATGGGAAGAGTGTGCAGCCGCACAAGCCTTGCAATGGCCATTCGTTAAGATCGATTTGCAACCGGATAGCTCCCACAGATTCCCTGGCTTAACACCTAAGACTGTAAGCTACTACTTTGCTGCTGTATATGGGAACTCTGATGCTGATTCCAGCAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

35.26

Weight (kDa)

4.83

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 780
AclWI	GGATC	2 cut(s)	297, 716
AcoI	YGGCCR	1 cut(s)	797
AcsI	RAATTY	1 cut(s)	734
AfaI	GTAC	3 cut(s)	328, 365, 668
AfiI	CCNNNNNNNGG	1 cut(s)	795
AflII	CTTAAG	1 cut(s)	197
AgeI	ACCGGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	310, 346, 675, 703, 724
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	6 cut(s)	25, 377, 564, 691, 831, 870
AluI	AGCT	6 cut(s)	25, 377, 564, 691, 831, 870
Alw26I	GTCTC	2 cut(s)	77, 262
AlwI	GGATC	2 cut(s)	297, 716
AlwNI	CAGNNNCTG	1 cut(s)	744
AoxI	GGCC	2 cut(s)	597, 797
ApaI	GGGCCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	776, 881
ApoI	RAATTY	1 cut(s)	734
AsiGI	ACCGGT	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	50, 597, 598
AsuC2I	CCSGG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	788, 868
BccI	CCATC	4 cut(s)	41, 275, 533, 756
BciT130I	CCWGG	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	77, 262
BfaI	CTAG	3 cut(s)	534, 584, 638
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	2 cut(s)	101, 201
BisI	GCNGC	3 cut(s)	777, 780, 882
BlsI	GCNGC	3 cut(s)	778, 781, 883
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	595, 846
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	50, 597, 598
BmiI	GGNNCC	3 cut(s)	142, 598, 599
BmrFI	CCNGG	2 cut(s)	595, 846
BmsI	GCATC	2 cut(s)	379, 892
BpuMI	CCSGG	1 cut(s)	595
Bsa29I	ATCGAT	2 cut(s)	428, 813
BsaJI	CCNNGG	2 cut(s)	594, 844
BsaWI	WCCGGW	2 cut(s)	477, 823
Bsc4I	CCNNNNNNNGG	1 cut(s)	795
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	2 cut(s)	250, 800
BseBI	CCWGG	1 cut(s)	846
BseCI	ATCGAT	2 cut(s)	428, 813
BseDI	CCNNGG	2 cut(s)	594, 844
BseGI	GGATG	3 cut(s)	183, 448, 767
BseLI	CCNNNNNNNGG	1 cut(s)	795
BseMI	GCAATG	2 cut(s)	250, 800
BseMII	CTCAG	2 cut(s)	117, 581
BseNI	ACTGG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	2 cut(s)	788, 868
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	795
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	599, 799
BshTI	ACCGGT	1 cut(s)	477
BshVI	ATCGAT	2 cut(s)	428, 813
BsiEI	CGRYCG	1 cut(s)	753
BsiSI	CCGG	4 cut(s)	478, 594, 634, 824
BslFI	GGGAC	2 cut(s)	86, 770
BslI	CCNNNNNNNGG	1 cut(s)	795
BsmAI	GTCTC	2 cut(s)	77, 262
BsmFI	GGGAC	2 cut(s)	86, 770
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	599, 799
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
BspACI	CCGC	2 cut(s)	383, 780
BspANI	GGCC	2 cut(s)	599, 799
BspCNI	CTCAG	2 cut(s)	118, 580
BspDI	ATCGAT	2 cut(s)	428, 813
BspLI	GGNNCC	3 cut(s)	142, 598, 599
BspPI	GGATC	2 cut(s)	297, 716
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	250, 800
BsrFI	RCCGGY	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	594, 844
BssMI	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	3 cut(s)	273, 671, 865
Bst6I	CTCTTC	2 cut(s)	522, 762
BstAFI	CTTAAG	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	5 cut(s)	98, 126, 567, 650, 858
BstF5I	GGATG	3 cut(s)	183, 448, 767
BstKTI	GATC	6 cut(s)	104, 204, 292, 711, 753, 813
BstMAI	GTCTC	2 cut(s)	77, 262
BstMBI	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	2 cut(s)	634, 785
BstNI	CCWGG	1 cut(s)	846
BstSCI	CCNGG	2 cut(s)	593, 844
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	2 cut(s)	788, 868
BstX2I	RGATCY	3 cut(s)	101, 201, 289
BstYI	RGATCY	3 cut(s)	101, 201, 289
Bsu15I	ATCGAT	2 cut(s)	428, 813
BsuRI	GGCC	2 cut(s)	599, 799
BsuTUI	ATCGAT	2 cut(s)	428, 813
BtsCI	GGATG	3 cut(s)	183, 448, 767
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	60, 518
Cac8I	GCNNGC	1 cut(s)	626
CaiI	CAGNNNCTG	1 cut(s)	744
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	50, 597, 598
ClaI	ATCGAT	2 cut(s)	428, 813
Csp6I	GTAC	3 cut(s)	327, 364, 667
CspAI	ACCGGT	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	3 cut(s)	76, 519, 656
CviQI	GTAC	3 cut(s)	327, 364, 667
DdeI	CTNAG	5 cut(s)	98, 126, 567, 650, 858
DpnI	GATC	6 cut(s)	103, 203, 291, 710, 752, 812
DpnII	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	2 cut(s)	522, 762
EarI	CTCTTC	2 cut(s)	522, 762
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	2 cut(s)	597, 598
EcoRII	CCWGG	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	3 cut(s)	79, 522, 659
FaqI	GGGAC	2 cut(s)	86, 770
FatI	CATG	3 cut(s)	75, 518, 655
Fnu4HI	GCNGC	3 cut(s)	777, 780, 882
FokI	GGATG	3 cut(s)	190, 455, 774
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	777, 780, 882
FspBI	CTAG	3 cut(s)	534, 584, 638
GluI	GCNGC	3 cut(s)	777, 780, 882
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	599, 799
HapII	CCGG	4 cut(s)	478, 594, 634, 824
Hin1II	CATG	3 cut(s)	79, 522, 659
HinfI	GANTC	8 cut(s)	85, 128, 260, 425, 530, 741, 840, 908
HpaII	CCGG	4 cut(s)	478, 594, 634, 824
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	3 cut(s)	43, 740, 901
Hpy188III	TCNNGA	3 cut(s)	257, 569, 616
Hpy8I	GTNNAC	1 cut(s)	667
HpyCH4III	ACNGT	3 cut(s)	273, 671, 865
HpyCH4V	TGCA	5 cut(s)	243, 551, 776, 793, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	634, 785
HpyF3I	CTNAG	5 cut(s)	98, 126, 567, 650, 858
Hsp92II	CATG	3 cut(s)	79, 522, 659
Kzo9I	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
LmnI	GCTCC	5 cut(s)	146, 508, 696, 715, 836
Lsp1109I	GCAGC	2 cut(s)	788, 868
LweI	GCATC	2 cut(s)	379, 892
MaeI	CTAG	3 cut(s)	534, 584, 638
MaeIII	GTNAC	3 cut(s)	206, 457, 586
MalI	GATC	6 cut(s)	103, 203, 291, 710, 752, 812
MboI	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
MboII	GAAGA	4 cut(s)	211, 480, 539, 779
MflI	RGATCY	3 cut(s)	101, 201, 289
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	799
MluCI	AATT	1 cut(s)	734
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	3 cut(s)	79, 137, 539
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	152, 168, 229, 345, 611, 623
Mox20I	TGGCCA	1 cut(s)	799
MscI	TGGCCA	1 cut(s)	799
MseI	TTAA	6 cut(s)	110, 135, 153, 198, 807, 851
MslI	CAYNNNNRTG	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	799
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	4 cut(s)	478, 594, 634, 824
MspR9I	CCNGG	2 cut(s)	595, 846
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	2 cut(s)	634, 785
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
NlaIII	CATG	3 cut(s)	79, 522, 659
NlaIV	GGNNCC	3 cut(s)	142, 598, 599
NmuCI	GTSAC	3 cut(s)	206, 457, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	5 cut(s)	260, 425, 741, 840, 908
PinAI	ACCGGT	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	778, 781, 883
Ple19I	CGATCG	1 cut(s)	753
PleI	GAGTC	3 cut(s)	79, 136, 538
PpsI	GAGTC	3 cut(s)	79, 136, 538
Psp6I	CCWGG	1 cut(s)	844
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	142, 598, 599
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	3 cut(s)	50, 597, 598
PstNI	CAGNNNCTG	1 cut(s)	744
PsuI	RGATCY	3 cut(s)	101, 201, 289
PvuI	CGATCG	1 cut(s)	753
RsaI	GTAC	3 cut(s)	328, 365, 668
RsaNI	GTAC	3 cut(s)	327, 364, 667
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	6 cut(s)	110, 135, 153, 198, 807, 851
SatI	GCNGC	3 cut(s)	777, 780, 882
Sau3AI	GATC	6 cut(s)	101, 201, 289, 708, 750, 810
Sau96I	GGNCC	3 cut(s)	50, 597, 598
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	3 cut(s)	79, 137, 539
ScrFI	CCNGG	2 cut(s)	595, 846
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	8 cut(s)	27, 163, 379, 566, 693, 833, 859, 872
SfaNI	GCATC	2 cut(s)	379, 892
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	734
SsiI	CCGC	2 cut(s)	383, 780
SspMI	CTAG	3 cut(s)	534, 584, 638
StyD4I	CCNGG	2 cut(s)	593, 844
TaaI	ACNGT	3 cut(s)	273, 671, 865
TaqI	TCGA	4 cut(s)	373, 428, 555, 813
TasI	AATT	1 cut(s)	734
TatI	WGTACW	2 cut(s)	326, 666
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	5 cut(s)	260, 425, 741, 840, 908
Tru1I	TTAA	6 cut(s)	110, 135, 153, 198, 807, 851
Tru9I	TTAA	6 cut(s)	110, 135, 153, 198, 807, 851
TscAI	CASTG	2 cut(s)	60, 518
TseFI	GTSAC	3 cut(s)	206, 457, 586
TseI	GCWGC	2 cut(s)	776, 881
Tsp45I	GTSAC	3 cut(s)	206, 457, 586
TspDTI	ATGAA	6 cut(s)	17, 252, 403, 480, 507, 672
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	2 cut(s)	60, 518
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XspI	CTAG	3 cut(s)	534, 584, 638
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.