Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Reverse (-)

44986726 .. 44993564

Gene Structure 6839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGACTGATGGCAGTATTCTTAGCTCAAAGTCAATGTTTACTACTAGAGTACAAAACACTCAAACTGCGGCCACACCAAAAGATCCTCCACCATACTTCGTCGTCAATCTCTTGGTCAGCTGCTTTGAGTTGACACCGAAATCGGGGAGGATAATGGGTGAGAATGCAAAAGGGGTTGCTGAAAGCAGCAGGGATCAGAAACTAGATGTTTATATATGGGACATGGATGAGACTCTGATACTGCTCAAGTCTCTGTTGACCGGAACGTACGCGGAGGGTTTTAATGGGGTGAAGAATGTACAAGAGGGTGTAGAAATTGGAAAGAAATGGGAGAAGCAAATTCTATCTCTATGTGATGATCATTTCTTCTATGAACAGATTGAGAACCACAATAAACCCTATCTTGATGTCTTGCGCCGATATGATGATGGGCGGAATCTTTCTGAATATGATTTCAGCAAAGATGAATTTGGTCCTTCTTATGATGATGATGACAAAAGAAAACTGGCATATAGGCACAGAGTCATAGCCCATAGATATAAACAGGGTTTGCGGAGTCTTCTTAATCAAGAGACGACAAAAGACTTGGATGAATTGTATGATATGACTGATAAATATACAGATAGGTGGCTCACGTCAGCACGCGTCTTCTTAGAAGAGTGTTCTGTTGGGAATGGAGGCACATCCGTTGTGGCTGCTGATGGGATAAATGACTCTTATGCTACAAAGCGTATTCATGTTTTAGTGACATCTGGATCATTGATCCCCAGCCTTGTCAAATGCTTGCTCTTTCGACTTGACAATATGATAGCTCATGAAAATGTCTATAGTTCCTGGGAAGTGGGGAAACTACAATGTTTTCAGTGGATCAAGGCACGTTTCAATGGTCCAAAGGTCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGGGTGAAGCTGCACAATTGATGCAATGGCCATTTATTAAAATTGATATGCGACCAGGCAGCTCTCACAGATTTCCAGGCCTCACATTGAGGACGGTAGGATTTTACTTTTCTGTTGTATATGGGAATTCTGATGCTGGAGATGAAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

41.06

Weight (kDa)

5.53

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	272, 645
AciI	CCGC	5 cut(s)	68, 272, 433, 553, 898
AclWI	GGATC	5 cut(s)	77, 201, 757, 763, 875
AcoI	YGGCCR	2 cut(s)	69, 956
AcsI	RAATTY	3 cut(s)	339, 467, 1054
AfaI	GTAC	3 cut(s)	51, 269, 300
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	1 cut(s)	883
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	3 cut(s)	833, 982, 1003
AluBI	AGCT	5 cut(s)	24, 120, 812, 938, 990
AluI	AGCT	5 cut(s)	24, 120, 812, 938, 990
Alw26I	GTCTC	3 cut(s)	224, 255, 566
AlwI	GGATC	5 cut(s)	77, 201, 757, 763, 875
AoxI	GGCC	3 cut(s)	69, 956, 1006
ApeKI	GCWGC	5 cut(s)	120, 186, 695, 938, 987
ApoI	RAATTY	3 cut(s)	339, 467, 1054
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	473, 887, 895
AsuHPI	GGTGA	3 cut(s)	170, 301, 944
AvaII	GGWCC	3 cut(s)	473, 887, 895
BalI	TGGCCA	1 cut(s)	958
BbsI	GAAGAC	2 cut(s)	551, 640
BbvI	GCAGC	5 cut(s)	107, 198, 682, 925, 999
BccI	CCATC	5 cut(s)	2, 422, 695, 911, 915
BciT130I	CCWGG	3 cut(s)	835, 984, 1005
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	224, 255, 566
BfaI	CTAG	2 cut(s)	45, 203
BfmI	CTRYAG	1 cut(s)	826
BisI	GCNGC	6 cut(s)	69, 121, 187, 696, 939, 988
BlsI	GCNGC	6 cut(s)	70, 122, 188, 697, 940, 989
Bme1390I	CCNGG	3 cut(s)	835, 984, 1005
Bme18I	GGWCC	3 cut(s)	473, 887, 895
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	473, 887, 895
BmrFI	CCNGG	3 cut(s)	835, 984, 1005
BmsI	GCATC	2 cut(s)	939, 1051
BpiI	GAAGAC	2 cut(s)	551, 640
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	834
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	959
BseBI	CCWGG	3 cut(s)	835, 984, 1005
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	5 cut(s)	232, 595, 683, 922, 926
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	959
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	5 cut(s)	107, 198, 682, 925, 999
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	924
Bsh1236I	CGCG	2 cut(s)	272, 645
BshFI	GGCC	3 cut(s)	71, 958, 1008
BsiSI	CCGG	1 cut(s)	261
BsiWI	CGTACG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	3 cut(s)	224, 255, 566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	71, 958, 1008
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
BspACI	CCGC	5 cut(s)	68, 272, 433, 553, 898
BspANI	GGCC	3 cut(s)	71, 958, 1008
BspFNI	CGCG	2 cut(s)	272, 645
BspHI	TCATGA	1 cut(s)	814
BspPI	GGATC	5 cut(s)	77, 201, 757, 763, 875
BsrDI	GCAATG	1 cut(s)	959
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
Bst2UI	CCWGG	3 cut(s)	835, 984, 1005
Bst4CI	ACNGT	1 cut(s)	1024
Bst6I	CTCTTC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	643, 785
BstDEI	CTNAG	2 cut(s)	20, 652
BstF5I	GGATG	5 cut(s)	232, 595, 683, 922, 926
BstFNI	CGCG	2 cut(s)	272, 645
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	6 cut(s)	85, 196, 361, 758, 765, 870
BstMAI	GTCTC	3 cut(s)	224, 255, 566
BstMBI	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
BstNI	CCWGG	3 cut(s)	835, 984, 1005
BstSCI	CCNGG	3 cut(s)	833, 982, 1003
BstSFI	CTRYAG	1 cut(s)	826
BstUI	CGCG	2 cut(s)	272, 645
BstV1I	GCAGC	5 cut(s)	107, 198, 682, 925, 999
BstV2I	GAAGAC	2 cut(s)	551, 640
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	71, 958, 1008
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	5 cut(s)	232, 595, 683, 922, 926
BtsIMutI	CAGTG	1 cut(s)	869
Cac8I	GCNNGC	2 cut(s)	643, 785
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	473, 887, 895
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	50, 268, 299
CviAII	CATG	3 cut(s)	223, 737, 815
CviQI	GTAC	3 cut(s)	50, 268, 299
DdeI	CTNAG	2 cut(s)	20, 652
DpnI	GATC	6 cut(s)	84, 195, 360, 757, 764, 869
DpnII	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
EaeI	YGGCCR	2 cut(s)	69, 956
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	1008
Eco47I	GGWCC	3 cut(s)	473, 887, 895
EcoRI	GAATTC	1 cut(s)	1054
EcoRII	CCWGG	3 cut(s)	833, 982, 1003
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	3 cut(s)	226, 740, 818
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	222, 736, 814
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	6 cut(s)	69, 121, 187, 696, 939, 988
FokI	GGATG	5 cut(s)	239, 602, 670, 929, 933
Fsp4HI	GCNGC	6 cut(s)	69, 121, 187, 696, 939, 988
FspBI	CTAG	2 cut(s)	45, 203
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	6 cut(s)	69, 121, 187, 696, 939, 988
GsaI	CCCAGC	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	71, 958, 1008
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	226, 740, 818
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	2 cut(s)	132, 258
HindII	GTYRAC	2 cut(s)	132, 258
HinfI	GANTC	5 cut(s)	232, 436, 522, 556, 713
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	3 cut(s)	170, 301, 944
Hpy166II	GTNNAC	3 cut(s)	39, 132, 258
Hpy188I	TCNGA	4 cut(s)	198, 237, 445, 1060
Hpy188III	TCNNGA	4 cut(s)	404, 569, 753, 815
Hpy8I	GTNNAC	3 cut(s)	39, 132, 258
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	1 cut(s)	1024
HpyCH4IV	ACGT	3 cut(s)	266, 635, 877
HpyCH4V	TGCA	3 cut(s)	167, 941, 952
HpyF3I	CTNAG	2 cut(s)	20, 652
HpySE526I	ACGT	3 cut(s)	266, 635, 877
Hsp92II	CATG	3 cut(s)	226, 740, 818
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
Lsp1109I	GCAGC	5 cut(s)	107, 198, 682, 925, 999
LweI	GCATC	2 cut(s)	939, 1051
MaeI	CTAG	2 cut(s)	45, 203
MaeII	ACGT	3 cut(s)	266, 635, 877
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	6 cut(s)	84, 195, 360, 757, 764, 869
MboI	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
MboII	GAAGA	5 cut(s)	304, 358, 551, 640, 668
MfeI	CAATTG	1 cut(s)	944
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	8 cut(s)	315, 339, 467, 593, 909, 944, 969, 1054
MluI	ACGCGT	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	958
MlyI	GAGTC	4 cut(s)	226, 531, 565, 707
MnlI	CCTC	9 cut(s)	96, 141, 268, 298, 671, 919, 922, 1011, 1019
Mox20I	TGGCCA	1 cut(s)	958
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	3 cut(s)	282, 564, 966
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	3 cut(s)	835, 984, 1005
MunI	CAATTG	1 cut(s)	944
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	3 cut(s)	835, 984, 1005
MvnI	CGCG	2 cut(s)	272, 645
NdeII	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
NlaIII	CATG	3 cut(s)	226, 740, 818
NmuCI	GTSAC	1 cut(s)	745
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	1008
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	436
Pfl23II	CGTACG	1 cut(s)	267
PkrI	GCNGC	6 cut(s)	70, 122, 188, 697, 940, 989
PleI	GAGTC	4 cut(s)	226, 530, 564, 707
PpsI	GAGTC	4 cut(s)	226, 530, 564, 707
Psp6I	CCWGG	3 cut(s)	833, 982, 1003
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	3 cut(s)	833, 982, 1003
PspLI	CGTACG	1 cut(s)	267
PspPI	GGNCC	3 cut(s)	473, 887, 895
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	120
RsaI	GTAC	3 cut(s)	51, 269, 300
RsaNI	GTAC	3 cut(s)	50, 268, 299
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	282, 564, 966
SatI	GCNGC	6 cut(s)	69, 121, 187, 696, 939, 988
Sau3AI	GATC	6 cut(s)	82, 193, 358, 755, 762, 867
Sau96I	GGNCC	3 cut(s)	473, 887, 895
SchI	GAGTC	4 cut(s)	226, 531, 565, 707
ScrFI	CCNGG	3 cut(s)	835, 984, 1005
SfaNI	GCATC	2 cut(s)	939, 1051
SfcI	CTRYAG	1 cut(s)	826
SinI	GGWCC	3 cut(s)	473, 887, 895
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	8 cut(s)	315, 339, 467, 593, 909, 944, 969, 1054
SseBI	AGGCCT	1 cut(s)	1008
SsiI	CCGC	5 cut(s)	68, 272, 433, 553, 898
SspMI	CTAG	2 cut(s)	45, 203
StuI	AGGCCT	1 cut(s)	1008
StyD4I	CCNGG	3 cut(s)	833, 982, 1003
TaaI	ACNGT	1 cut(s)	1024
TaiI	ACGT	3 cut(s)	269, 638, 880
TaqI	TCGA	1 cut(s)	793
TasI	AATT	8 cut(s)	315, 339, 467, 593, 909, 944, 969, 1054
TatI	WGTACW	2 cut(s)	49, 298
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	282, 564, 966
Tru9I	TTAA	3 cut(s)	282, 564, 966
TscAI	CASTG	1 cut(s)	869
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	5 cut(s)	120, 186, 695, 938, 987
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	5 cut(s)	387, 480, 606, 725, 831
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	869
VpaK11BI	GGWCC	3 cut(s)	473, 887, 895
XapI	RAATTY	3 cut(s)	339, 467, 1054
XspI	CTAG	2 cut(s)	45, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.