Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Reverse (-)

3873283 .. 3878810

Gene Structure 5528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1032400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTGAAAGTACACGTATGGAAAAGGGGTTTGCGAAGAGCAGCATTGGTCGGAAGATAAATGTCTATATTTGGGATATGGATGAAACTCTTATCCTGCTCAAGTCTTTGTTGAATGGAACATACGCAGAGGTTTTCAACGGTTCCAAGAATATACAAGAGGGTGTTGAAATCGGGAAGATGTGGGAGAAGCACATTCTTAGTTTGTGCGACGATCATTTCTTTTATGAACAGATTGAGAACTGCAATAAACCCTCTCTCGATGCCTTGAGCCAATATGATGATGGGCAGAATCTTTCTGGTTATGATTTCGCCAAAGATGGATTTGGTACTCCACATGATGATGACAACAATAGGAAACTTGCTTATAGGCACCGAGTCATAGCCCATAGGTACAAACAGGGTTTGCGCAGTTTTCTTAATCAAGAGATGATAAAAGGATTGGATGAGTTGTATGATACGACTGATAAATATACAGATAGATGGCTCTCCTCAGCGCGTGTCTTCTTGGAGGAAGAGTGTTCTGCTCGGCACAATGAGTCATCTCTCATGGCTTCTGATGGGATCAATGAATCTTCCGCTTCAAAGTATCAACGTATTAATCTTTTAGTGACATCTGGGTCATTAATCCCCAGCCTTGTAAAATGCTTGCTCTTTCGACTTAACAATATGATAACACATGAAAATGTATATAGTTCCTGGGAAGTGGGAAAACTACAATGCTTTGAGCAGATCAAATCGCGTTTTAACAGCCCAAATGCCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGTGTGAAGCAGCACAAGCAATGCGATGGCCATTTGTTAAGATTGATATGCAACCAGACAGTGCTCACAGGTTTCCGGGCCTCACGTCCAAGACACTCGGATTCTACTTTTCTGTTGTATATGGGAGTTCCGACGATGAAGATGAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.15

Weight (kDa)

5.23

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	619
Acc16I	TGCGCA	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	372
AccII	CGCG	2 cut(s)	499, 742
AciI	CCGC	2 cut(s)	579, 763
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	821
AfaI	GTAC	3 cut(s)	13, 331, 395
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	115, 139, 170, 585
AjiI	CACGTC	1 cut(s)	879
AjnI	CCWGG	1 cut(s)	698
Alw21I	GWGCWC	1 cut(s)	859
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	2 cut(s)	821, 871
ApeKI	GCWGC	2 cut(s)	42, 803
AseI	ATTAAT	2 cut(s)	600, 626
AspLEI	GCGC	2 cut(s)	411, 499
AspS9I	GGNCC	1 cut(s)	871
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	859
BbvCI	CCTCAGC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	54, 815
BccI	CCATC	7 cut(s)	278, 314, 477, 554, 776, 780, 813
BciT130I	CCWGG	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	870
BisI	GCNGC	2 cut(s)	43, 804
BlsI	GCNGC	2 cut(s)	44, 805
Bme1390I	CCNGG	2 cut(s)	700, 870
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	1 cut(s)	871
BmiI	GGNNCC	2 cut(s)	145, 374
BmrFI	CCNGG	2 cut(s)	700, 870
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	86, 289
BpuMI	CCSGG	1 cut(s)	870
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	4 cut(s)	88, 451, 787, 791
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	481, 806
BseXI	GCAGC	2 cut(s)	54, 815
BseYI	CCCAGC	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	499, 742
BshFI	GGCC	2 cut(s)	823, 873
BshNI	GGYRCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	1 cut(s)	869
BsnI	GGCC	2 cut(s)	823, 873
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	3 cut(s)	214, 564, 732
BspACI	CCGC	2 cut(s)	579, 763
BspANI	GGCC	2 cut(s)	823, 873
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	2 cut(s)	499, 742
BspLI	GGNNCC	2 cut(s)	145, 374
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	3 cut(s)	214, 564, 732
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	143, 854
Bst6I	CTCTTC	2 cut(s)	32, 510
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	650, 763
BstDEI	CTNAG	2 cut(s)	200, 493
BstF5I	GGATG	4 cut(s)	88, 451, 787, 791
BstFNI	CGCG	2 cut(s)	499, 742
BstHHI	GCGC	2 cut(s)	411, 499
BstKTI	GATC	3 cut(s)	217, 567, 735
BstMBI	GATC	3 cut(s)	214, 564, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	809
BstNI	CCWGG	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	698, 868
BstUI	CGCG	2 cut(s)	499, 742
BstV1I	GCAGC	2 cut(s)	54, 815
BstV2I	GAAGAC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	823, 873
BtgZI	GCGATG	1 cut(s)	832
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	4 cut(s)	88, 451, 787, 791
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	2 cut(s)	650, 763
CfoI	GCGC	2 cut(s)	411, 499
Cfr13I	GGNCC	1 cut(s)	871
Csp6I	GTAC	3 cut(s)	12, 330, 394
CviAII	CATG	3 cut(s)	338, 550, 680
CviJI	RGCY	8 cut(s)	273, 386, 487, 554, 636, 753, 823, 873
CviKI_1	RGCY	8 cut(s)	273, 386, 487, 554, 636, 753, 823, 873
CviQI	GTAC	3 cut(s)	12, 330, 394
DdeI	CTNAG	2 cut(s)	200, 493
DpnI	GATC	3 cut(s)	216, 566, 734
DpnII	GATC	3 cut(s)	214, 564, 732
DrdI	GACNNNNNNGTC	1 cut(s)	619
DseDI	GACNNNNNNGTC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	2 cut(s)	32, 510
EarI	CTCTTC	2 cut(s)	32, 510
EcoRII	CCWGG	1 cut(s)	698
FaeI	CATG	3 cut(s)	341, 553, 683
FatI	CATG	3 cut(s)	337, 549, 679
FauI	CCCGC	1 cut(s)	770
Fnu4HI	GCNGC	2 cut(s)	43, 804
FokI	GGATG	4 cut(s)	95, 458, 794, 798
Fsp4HI	GCNGC	2 cut(s)	43, 804
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	2 cut(s)	410, 498
GluI	GCNGC	2 cut(s)	43, 804
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	823, 873
HapII	CCGG	1 cut(s)	869
HhaI	GCGC	2 cut(s)	411, 499
Hin1II	CATG	3 cut(s)	341, 553, 683
Hin6I	GCGC	2 cut(s)	409, 497
HinP1I	GCGC	2 cut(s)	409, 497
HinfI	GANTC	5 cut(s)	292, 378, 539, 572, 894
HpaII	CCGG	1 cut(s)	869
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	54, 559, 893, 925
Hpy188III	TCNNGA	3 cut(s)	175, 260, 425
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	2 cut(s)	215, 929
HpyCH4III	ACNGT	2 cut(s)	143, 854
HpyCH4IV	ACGT	3 cut(s)	16, 595, 878
HpyCH4V	TGCA	2 cut(s)	246, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	809
HpyF3I	CTNAG	2 cut(s)	200, 493
HpySE526I	ACGT	3 cut(s)	16, 595, 878
Hsp92II	CATG	3 cut(s)	341, 553, 683
HspAI	GCGC	2 cut(s)	409, 497
Kzo9I	GATC	3 cut(s)	214, 564, 732
LguI	GCTCTTC	1 cut(s)	32
Lsp1109I	GCAGC	2 cut(s)	54, 815
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	3 cut(s)	16, 595, 878
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	216, 566, 734
MboI	GATC	3 cut(s)	214, 564, 732
MboII	GAAGA	7 cut(s)	49, 67, 190, 496, 527, 567, 944
MhlI	GDGCHC	1 cut(s)	859
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	1 cut(s)	774
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	387, 548
MmeI	TCCRAC	2 cut(s)	32, 948
MnlI	CCTC	7 cut(s)	124, 154, 265, 502, 505, 784, 884
Mox20I	TGGCCA	1 cut(s)	823
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	6 cut(s)	420, 600, 626, 663, 747, 831
MslI	CAYNNNNRTG	2 cut(s)	342, 684
Msp20I	TGGCCA	1 cut(s)	823
MspI	CCGG	1 cut(s)	869
MspR9I	CCNGG	2 cut(s)	700, 870
MvaI	CCWGG	1 cut(s)	700
MvnI	CGCG	2 cut(s)	499, 742
MwoI	GCNNNNNNNGC	1 cut(s)	809
NciI	CCSGG	1 cut(s)	870
NdeII	GATC	3 cut(s)	214, 564, 732
NlaIII	CATG	3 cut(s)	341, 553, 683
NlaIV	GGNNCC	2 cut(s)	145, 374
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	610
NsbI	TGCGCA	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	292, 572, 894
PkrI	GCNGC	2 cut(s)	44, 805
PleI	GAGTC	2 cut(s)	386, 547
PpsI	GAGTC	2 cut(s)	386, 547
Ppu21I	YACGTR	1 cut(s)	17
PshBI	ATTAAT	2 cut(s)	600, 626
Psp6I	CCWGG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	2 cut(s)	145, 374
PspPI	GGNCC	1 cut(s)	871
RsaI	GTAC	3 cut(s)	13, 331, 395
RsaNI	GTAC	3 cut(s)	12, 330, 394
RseI	CAYNNNNRTG	2 cut(s)	342, 684
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	420, 600, 626, 663, 747, 831
SatI	GCNGC	2 cut(s)	43, 804
Sau3AI	GATC	3 cut(s)	214, 564, 732
Sau96I	GGNCC	1 cut(s)	871
SchI	GAGTC	2 cut(s)	387, 548
ScrFI	CCNGG	2 cut(s)	700, 870
SduI	GDGCHC	1 cut(s)	859
SetI	ASST	6 cut(s)	19, 135, 395, 598, 866, 881
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	342, 684
SmlI	CTYRAG	2 cut(s)	101, 268
SmoI	CTYRAG	2 cut(s)	101, 268
Sse9I	AATT	1 cut(s)	774
SsiI	CCGC	2 cut(s)	579, 763
StyD4I	CCNGG	2 cut(s)	698, 868
TaaI	ACNGT	2 cut(s)	143, 854
TaiI	ACGT	3 cut(s)	19, 598, 881
TaqI	TCGA	2 cut(s)	261, 658
TasI	AATT	1 cut(s)	774
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	292, 572, 894
Tru1I	TTAA	6 cut(s)	420, 600, 626, 663, 747, 831
Tru9I	TTAA	6 cut(s)	420, 600, 626, 663, 747, 831
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	2 cut(s)	42, 803
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	99, 243, 585, 696, 945
TspRI	CASTG	1 cut(s)	859
VspI	ATTAAT	2 cut(s)	600, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.