Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Reverse (-)

4396533 .. 4401305

Gene Structure 4773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G039700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGTGAAAGTACTAGTGTGACAAATGGGTTTTCTCAAAGCAGGATGGATCAGAAAATAAATATCTATATATGGGACATGGATGAAACTCTTATACTGCTCAAGTCTTTGTTGAATGGAACGTATGCGGAGGCTTTCAATGGTTTGAAGAATATCCAAGAGGGTGTTGAAATCGGAAAGATGTGGGAGAAGCACATTCTTGCTTTGTGTGACGATCATTTCTTTTATGAACAAATTGAGAACTACAATAAACCCTCTCTTGATGCCTTGAGCCAGTATGATGATGGGCGGAATCTTTCTGATTATGATTTCAACCAAGATGGGTTTGGTCCTCCATATGATGATTCCAACAATAGAAAACTGGCGTATAGGCACAGATTCATAGCCCATAGATACAAACAGGGTTTGCACAGTTTCCTAAATCAAGAGATGATAAAAGACTTGGATGAGTTGTATGATATGACTGATAAATATACAGACAGATGGCTCTCCTCAGCGCGCATCTTCTTGGAAGAGTGTTCTGCTGGGCACAAAAAGACATCTCTTGTGGCTGCTGATGGGATCAATGAATCTTCTGCTTCGAAGTATCAGCATATTAATCTTTTAGTGACATCTGGATCATTGATTCCCAGTCTTGTAAAATGCTTGCTCTTTCGACTCAACAGCATGATAACAGATGAAAATGTCTATAGTTCCTGGGAAGTGGGAAAACTACACTGTTTTCAGCAGATCAAGGTGCGTTTTAACCACCCAAATGTCCGCTTCTGTGTAATTGGGGATGGATGGGAGGAGTGTGAAGCTGCGCAAGCAATGCGATGGCCATTGGTTAAGATTGATATGCGACCAGGAGGCTCTCACAGGTTTCCAGGCCTCACATTCAGGACCCTCGGATTTTATTTTTCTGTTGTATATGGGAGCTCTGATGCTGAAGATGAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

36.2

Weight (kDa)

5.18

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	804
AccII	CGCG	1 cut(s)	499
AciI	CCGC	3 cut(s)	128, 289, 760
AclWI	GGATC	3 cut(s)	57, 569, 625
AcoI	YGGCCR	1 cut(s)	818
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	115, 139, 148, 170, 313
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	3 cut(s)	695, 844, 865
AluBI	AGCT	2 cut(s)	800, 918
AluI	AGCT	2 cut(s)	800, 918
Alw21I	GWGCWC	1 cut(s)	920
AlwI	GGATC	3 cut(s)	57, 569, 625
AoxI	GGCC	2 cut(s)	818, 868
ApeKI	GCWGC	2 cut(s)	551, 800
AseI	ATTAAT	1 cut(s)	597
AspLEI	GCGC	3 cut(s)	499, 501, 805
AspS9I	GGNCC	2 cut(s)	329, 882
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	329, 882
BaeGI	GKGCMC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	920
Bbv12I	GWGCWC	1 cut(s)	920
BbvCI	CCTCAGC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	538, 787
BccI	CCATC	8 cut(s)	40, 278, 314, 477, 551, 773, 777, 810
BciT130I	CCWGG	3 cut(s)	697, 846, 867
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	688
BisI	GCNGC	2 cut(s)	552, 801
BlsI	GCNGC	2 cut(s)	553, 802
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	697, 846, 867
Bme18I	GGWCC	2 cut(s)	329, 882
BmgT120I	GGNCC	2 cut(s)	329, 882
BmiI	GGNNCC	1 cut(s)	884
BmrFI	CCNGG	3 cut(s)	697, 846, 867
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	253, 510, 913
BmuI	ACTGGG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	493
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	86, 289
BsaJI	CCNNGG	2 cut(s)	696, 886
Bse1I	ACTGG	3 cut(s)	274, 366, 630
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	697, 846, 867
BseDI	CCNNGG	2 cut(s)	696, 886
BseGI	GGATG	5 cut(s)	51, 88, 451, 784, 788
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	3 cut(s)	274, 366, 630
BsePI	GCGCGC	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	481, 803
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	538, 787
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	820, 870
BsiHKAI	GWGCWC	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	820, 870
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	531, 920
Bsp143I	GATC	5 cut(s)	49, 214, 561, 617, 729
BspACI	CCGC	3 cut(s)	128, 289, 760
BspANI	GGCC	2 cut(s)	820, 870
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	884
BspPI	GGATC	3 cut(s)	57, 569, 625
BspT104I	TTCGAA	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	816
BsrI	ACTGG	3 cut(s)	274, 366, 630
BssECI	CCNNGG	2 cut(s)	696, 886
BssHII	GCGCGC	1 cut(s)	497
BssMI	GATC	5 cut(s)	49, 214, 561, 617, 729
Bst2UI	CCWGG	3 cut(s)	697, 846, 867
Bst4CI	ACNGT	2 cut(s)	413, 719
Bst6I	CTCTTC	2 cut(s)	507, 933
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	499, 647, 807
BstDEI	CTNAG	1 cut(s)	493
BstF5I	GGATG	5 cut(s)	51, 88, 451, 784, 788
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	3 cut(s)	499, 501, 805
BstKTI	GATC	5 cut(s)	52, 217, 564, 620, 732
BstMBI	GATC	5 cut(s)	49, 214, 561, 617, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 811
BstNI	CCWGG	3 cut(s)	697, 846, 867
BstSCI	CCNGG	3 cut(s)	695, 844, 865
BstSFI	CTRYAG	1 cut(s)	688
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	538, 787
BsuRI	GGCC	2 cut(s)	820, 870
BtgZI	GCGATG	1 cut(s)	829
BtsCI	GGATG	5 cut(s)	51, 88, 451, 784, 788
BtsIMutI	CAGTG	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	499, 647, 807
CfoI	GCGC	3 cut(s)	499, 501, 805
Cfr13I	GGNCC	2 cut(s)	329, 882
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	79, 667
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	5 cut(s)	51, 216, 563, 619, 731
DpnII	GATC	5 cut(s)	49, 214, 561, 617, 729
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	2 cut(s)	507, 933
EarI	CTCTTC	2 cut(s)	507, 933
EciI	GGCGGA	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	918
Eco147I	AGGCCT	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	920
Eco47I	GGWCC	2 cut(s)	329, 882
Eco53kI	GAGCTC	1 cut(s)	918
EcoICRI	GAGCTC	1 cut(s)	918
EcoO109I	RGGNCCY	1 cut(s)	882
EcoRII	CCWGG	3 cut(s)	695, 844, 865
EcoT38I	GRGCYC	1 cut(s)	920
FaeI	CATG	2 cut(s)	82, 670
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	78, 666
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	552, 801
FokI	GGATG	5 cut(s)	58, 95, 458, 791, 795
FriOI	GRGCYC	1 cut(s)	920
Fsp4HI	GCNGC	2 cut(s)	552, 801
FspBI	CTAG	1 cut(s)	15
FspI	TGCGCA	1 cut(s)	804
GlaI	GCGC	3 cut(s)	498, 500, 804
GluI	GCNGC	2 cut(s)	552, 801
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	820, 870
HhaI	GCGC	3 cut(s)	499, 501, 805
Hin1II	CATG	2 cut(s)	82, 670
Hin6I	GCGC	3 cut(s)	497, 499, 803
HinP1I	GCGC	3 cut(s)	497, 499, 803
HinfI	GANTC	6 cut(s)	292, 344, 378, 569, 625, 657
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	5 cut(s)	54, 176, 301, 890, 922
Hpy188III	TCNNGA	4 cut(s)	260, 425, 615, 880
HpyCH4III	ACNGT	2 cut(s)	413, 719
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 811
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	82, 670
HspAI	GCGC	3 cut(s)	497, 499, 803
Kzo9I	GATC	5 cut(s)	49, 214, 561, 617, 729
LmnI	GCTCC	1 cut(s)	915
Lsp1109I	GCAGC	2 cut(s)	538, 787
LweI	GCATC	3 cut(s)	253, 510, 913
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	19, 209, 607
MalI	GATC	5 cut(s)	51, 216, 563, 619, 731
MboI	GATC	5 cut(s)	49, 214, 561, 617, 729
MboII	GAAGA	5 cut(s)	160, 496, 524, 564, 941
MhlI	GDGCHC	2 cut(s)	531, 920
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	2 cut(s)	234, 771
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	124, 154, 265, 342, 502, 781, 842, 881, 896
Mox20I	TGGCCA	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	3 cut(s)	597, 744, 828
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	820
MspR9I	CCNGG	3 cut(s)	697, 846, 867
MvaI	CCWGG	3 cut(s)	697, 846, 867
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	806, 811
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	5 cut(s)	49, 214, 561, 617, 729
NlaIII	CATG	2 cut(s)	82, 670
NlaIV	GGNNCC	1 cut(s)	884
NmuCI	GTSAC	3 cut(s)	19, 209, 607
NsbI	TGCGCA	1 cut(s)	804
NspV	TTCGAA	1 cut(s)	581
PauI	GCGCGC	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	292, 344, 378, 569, 625
PkrI	GCNGC	2 cut(s)	553, 802
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	882
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	882
Psp6I	CCWGG	3 cut(s)	695, 844, 865
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	3 cut(s)	695, 844, 865
PspN4I	GGNNCC	1 cut(s)	884
PspPI	GGNCC	2 cut(s)	329, 882
PspPPI	RGGWCCY	1 cut(s)	882
PteI	GCGCGC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	753
SacI	GAGCTC	1 cut(s)	920
SaqAI	TTAA	3 cut(s)	597, 744, 828
SatI	GCNGC	2 cut(s)	552, 801
Sau3AI	GATC	5 cut(s)	49, 214, 561, 617, 729
Sau96I	GGNCC	2 cut(s)	329, 882
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	3 cut(s)	697, 846, 867
SduI	GDGCHC	2 cut(s)	531, 920
SetI	ASST	5 cut(s)	125, 738, 802, 863, 920
SfaNI	GCATC	3 cut(s)	253, 510, 913
SfcI	CTRYAG	1 cut(s)	688
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	2 cut(s)	329, 882
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	101, 268
SmoI	CTYRAG	2 cut(s)	101, 268
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	2 cut(s)	234, 771
SseBI	AGGCCT	1 cut(s)	870
SsiI	CCGC	3 cut(s)	128, 289, 760
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	920
StuI	AGGCCT	1 cut(s)	870
StyD4I	CCNGG	3 cut(s)	695, 844, 865
TaaI	ACNGT	2 cut(s)	413, 719
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	581, 655
TasI	AATT	2 cut(s)	234, 771
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	292, 344, 378, 569, 625
Tru1I	TTAA	3 cut(s)	597, 744, 828
Tru9I	TTAA	3 cut(s)	597, 744, 828
TscAI	CASTG	1 cut(s)	722
TseFI	GTSAC	3 cut(s)	19, 209, 607
TseI	GCWGC	2 cut(s)	551, 800
Tsp45I	GTSAC	3 cut(s)	19, 209, 607
TspDTI	ATGAA	5 cut(s)	99, 243, 370, 582, 693
TspRI	CASTG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	329, 882
VspI	ATTAAT	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 323
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.