Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Forward (+)

24057854 .. 24064116

Gene Structure 6263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG244500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTGAGAATGCAAAAGGGGTTGCTGAAAGCAGCAGGGATCAGAAAATAGATGTTTATATATGGGACATGGATGAGACTCTGATACTGCTCAAGTCTCTGTTGACCGGAACGTACGCAGAGGGTTTTAATGGGGTGAAGAATGTACAAGAGGGTGTAGAAATTGGAAAGAAATGGGAGAAGCAAATTCTATCTCTATGTGATGATCATTTCTTCTATGAACAGATTGAGAACCACAATAAACCCTATCTTGATGTCTTGCGCCGATATGATGATGGGCGGAATCTTTCTGAATATGATTTCAGCAAAGATGAATTTGGTCCTTCTTATGATGATGATGACAAAAGAAAACTGGCATATAGGCACAGAGTCATAGCCCATAGATACAAACAGGGTTTGCAGAGTCTTCTTAATCAAGAGACGACAAAAGACTTGGATGAATTGTATGATATTACTGATAAATATACAGATAGATGGCTCACGTCAGCACGCGTCTTCTTAGAAGAGTGTTCTGTCGGGAATGGAAGCACATCCGTTGTGGCTGCTGATGGGATAAATGACTCTTCTGCTACAAAGTGTATTCATGTTTTAGTGACATCTGGATCATTGATCCCCAGCCTTGTCAAATGCTTGCTCTTTCGACTTGACAATATGATAGCTCATGAAAATGTCTATAGTTCCTGGGAAGTGGGGAAACTACAATGTTTTCAGTGGATCAAGGCGCGTTTCAATGGTCCAAAGGTCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGGGTGAAGCTGCACAATTGATGCAATGGCCATTTATTAAAATTGATATGCGACCAGGCAGCTCTCACAGGTTTCCAGGCCTCACATTGAGGACGGTAGGATTTTACTTTTCTGTTGTATATGGGAATTCTGATGCTGAAGATGAAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.43

Weight (kDa)

5.09

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	492, 724
AciI	CCGC	2 cut(s)	280, 745
AclWI	GGATC	4 cut(s)	48, 604, 610, 722
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	3 cut(s)	186, 314, 901
AfaI	GTAC	2 cut(s)	116, 147
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	1 cut(s)	730
AjiI	CACGTC	1 cut(s)	483
AjnI	CCWGG	3 cut(s)	680, 829, 850
AluBI	AGCT	3 cut(s)	659, 785, 837
AluI	AGCT	3 cut(s)	659, 785, 837
Alw26I	GTCTC	3 cut(s)	71, 102, 413
AlwI	GGATC	4 cut(s)	48, 604, 610, 722
AoxI	GGCC	2 cut(s)	803, 853
ApeKI	GCWGC	4 cut(s)	33, 542, 785, 834
ApoI	RAATTY	3 cut(s)	186, 314, 901
AspLEI	GCGC	2 cut(s)	264, 724
AspS9I	GGNCC	3 cut(s)	320, 734, 742
AsuHPI	GGTGA	3 cut(s)	17, 148, 791
AvaII	GGWCC	3 cut(s)	320, 734, 742
BalI	TGGCCA	1 cut(s)	805
BbsI	GAAGAC	2 cut(s)	398, 487
BbvI	GCAGC	4 cut(s)	45, 529, 772, 846
BccI	CCATC	5 cut(s)	269, 468, 542, 758, 762
BciT130I	CCWGG	3 cut(s)	682, 831, 852
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	3 cut(s)	71, 102, 413
BfmI	CTRYAG	1 cut(s)	673
BisI	GCNGC	4 cut(s)	34, 543, 786, 835
BlsI	GCNGC	4 cut(s)	35, 544, 787, 836
Bme1390I	CCNGG	3 cut(s)	682, 831, 852
Bme18I	GGWCC	3 cut(s)	320, 734, 742
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	3 cut(s)	320, 734, 742
BmrFI	CCNGG	3 cut(s)	682, 831, 852
BmsI	GCATC	2 cut(s)	786, 898
BpiI	GAAGAC	2 cut(s)	398, 487
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	806
BseBI	CCWGG	3 cut(s)	682, 831, 852
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	5 cut(s)	79, 442, 530, 769, 773
BseMI	GCAATG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	4 cut(s)	45, 529, 772, 846
BseYI	CCCAGC	1 cut(s)	614
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	2 cut(s)	492, 724
BshFI	GGCC	2 cut(s)	805, 855
BsiSI	CCGG	1 cut(s)	108
BsiWI	CGTACG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	71, 102, 413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	805, 855
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	40, 205, 602, 609, 714
BspACI	CCGC	2 cut(s)	280, 745
BspANI	GGCC	2 cut(s)	805, 855
BspFNI	CGCG	2 cut(s)	492, 724
BspHI	TCATGA	1 cut(s)	661
BspPI	GGATC	4 cut(s)	48, 604, 610, 722
BsrDI	GCAATG	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	5 cut(s)	40, 205, 602, 609, 714
Bst2UI	CCWGG	3 cut(s)	682, 831, 852
Bst4CI	ACNGT	1 cut(s)	871
Bst6I	CTCTTC	2 cut(s)	498, 568
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	490, 632
BstDEI	CTNAG	1 cut(s)	499
BstF5I	GGATG	5 cut(s)	79, 442, 530, 769, 773
BstFNI	CGCG	2 cut(s)	492, 724
BstHHI	GCGC	2 cut(s)	264, 724
BstKTI	GATC	5 cut(s)	43, 208, 605, 612, 717
BstMAI	GTCTC	3 cut(s)	71, 102, 413
BstMBI	GATC	5 cut(s)	40, 205, 602, 609, 714
BstNI	CCWGG	3 cut(s)	682, 831, 852
BstSCI	CCNGG	3 cut(s)	680, 829, 850
BstSFI	CTRYAG	1 cut(s)	673
BstUI	CGCG	2 cut(s)	492, 724
BstV1I	GCAGC	4 cut(s)	45, 529, 772, 846
BstV2I	GAAGAC	2 cut(s)	398, 487
BsuRI	GGCC	2 cut(s)	805, 855
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	5 cut(s)	79, 442, 530, 769, 773
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	2 cut(s)	490, 632
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	264, 724
Cfr13I	GGNCC	3 cut(s)	320, 734, 742
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	115, 146
CviAII	CATG	3 cut(s)	70, 584, 662
CviJI	RGCY	9 cut(s)	377, 478, 542, 618, 659, 785, 805, 837, 855
CviKI_1	RGCY	9 cut(s)	377, 478, 542, 618, 659, 785, 805, 837, 855
CviQI	GTAC	2 cut(s)	115, 146
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	5 cut(s)	42, 207, 604, 611, 716
DpnII	GATC	5 cut(s)	40, 205, 602, 609, 714
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	2 cut(s)	498, 568
EarI	CTCTTC	2 cut(s)	498, 568
EciI	GGCGGA	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	855
Eco47I	GGWCC	3 cut(s)	320, 734, 742
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	3 cut(s)	680, 829, 850
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	3 cut(s)	73, 587, 665
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	69, 583, 661
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	34, 543, 786, 835
FokI	GGATG	5 cut(s)	86, 449, 517, 776, 780
Fsp4HI	GCNGC	4 cut(s)	34, 543, 786, 835
GlaI	GCGC	2 cut(s)	263, 723
GluI	GCNGC	4 cut(s)	34, 543, 786, 835
GsaI	CCCAGC	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	805, 855
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	264, 724
Hin1II	CATG	3 cut(s)	73, 587, 665
Hin6I	GCGC	2 cut(s)	262, 722
HinP1I	GCGC	2 cut(s)	262, 722
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	5 cut(s)	79, 283, 369, 403, 560
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	17, 148, 791
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	4 cut(s)	45, 84, 292, 907
Hpy188III	TCNNGA	5 cut(s)	251, 416, 517, 600, 662
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	871
HpyCH4IV	ACGT	2 cut(s)	113, 482
HpyCH4V	TGCA	4 cut(s)	14, 400, 788, 799
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	2 cut(s)	113, 482
Hsp92II	CATG	3 cut(s)	73, 587, 665
HspAI	GCGC	2 cut(s)	262, 722
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	40, 205, 602, 609, 714
Lsp1109I	GCAGC	4 cut(s)	45, 529, 772, 846
LweI	GCATC	2 cut(s)	786, 898
MaeII	ACGT	2 cut(s)	113, 482
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	5 cut(s)	42, 207, 604, 611, 716
MboI	GATC	5 cut(s)	40, 205, 602, 609, 714
MboII	GAAGA	7 cut(s)	151, 205, 398, 487, 515, 555, 926
MfeI	CAATTG	1 cut(s)	791
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	8 cut(s)	162, 186, 314, 440, 756, 791, 816, 901
MluI	ACGCGT	1 cut(s)	490
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	4 cut(s)	73, 378, 412, 554
MnlI	CCTC	6 cut(s)	115, 145, 766, 769, 858, 866
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	3 cut(s)	129, 411, 813
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	682, 831, 852
MunI	CAATTG	1 cut(s)	791
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	3 cut(s)	682, 831, 852
MvnI	CGCG	2 cut(s)	492, 724
NdeII	GATC	5 cut(s)	40, 205, 602, 609, 714
NlaIII	CATG	3 cut(s)	73, 587, 665
NmuCI	GTSAC	1 cut(s)	592
PagI	TCATGA	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	855
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	283
Pfl23II	CGTACG	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	35, 544, 787, 836
PleI	GAGTC	4 cut(s)	73, 377, 411, 554
PpsI	GAGTC	4 cut(s)	73, 377, 411, 554
Psp6I	CCWGG	3 cut(s)	680, 829, 850
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	3 cut(s)	680, 829, 850
PspLI	CGTACG	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	320, 734, 742
RsaI	GTAC	2 cut(s)	116, 147
RsaNI	GTAC	2 cut(s)	115, 146
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	129, 411, 813
SatI	GCNGC	4 cut(s)	34, 543, 786, 835
Sau3AI	GATC	5 cut(s)	40, 205, 602, 609, 714
Sau96I	GGNCC	3 cut(s)	320, 734, 742
SchI	GAGTC	4 cut(s)	73, 378, 412, 554
ScrFI	CCNGG	3 cut(s)	682, 831, 852
SetI	ASST	7 cut(s)	116, 485, 661, 744, 787, 839, 848
SfaNI	GCATC	2 cut(s)	786, 898
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	3 cut(s)	320, 734, 742
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	8 cut(s)	162, 186, 314, 440, 756, 791, 816, 901
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	2 cut(s)	280, 745
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	680, 829, 850
TaaI	ACNGT	1 cut(s)	871
TaiI	ACGT	2 cut(s)	116, 485
TaqI	TCGA	1 cut(s)	640
TasI	AATT	8 cut(s)	162, 186, 314, 440, 756, 791, 816, 901
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	129, 411, 813
Tru9I	TTAA	3 cut(s)	129, 411, 813
TscAI	CASTG	1 cut(s)	716
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	33, 542, 785, 834
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	234, 327, 453, 572, 678
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	716
VpaK11BI	GGWCC	3 cut(s)	320, 734, 742
XapI	RAATTY	3 cut(s)	186, 314, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.