pycom06g02680

Eyes absent homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
3209683 .. 3210901
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02680.1

Sequence Viewer

Length: 306 bp
ATGTTTACGTTACTCACTTATACTGTAACCTGTGCATTCTGTTATATTTTGAGTTCCTGGGAAGTGGGAAAACTACAATGCTTTGAGCAGATCAAATTGCGTTTTAACAGCCCAAATGCCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGTGTGAAGCAGCACAAGCAATGCGATGGCCATTTGTTAAGATTGATATGCAACCAGACAGCGCTCACAGGTTTCCGGGCCTCACGTCCAAGACACTCGGATTCTACTTTTCTGTTGTATATGGGAGTTCCGACGATGAAGATGAGAAAGAGTAG

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

4.77

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011900)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 179
AfeI AGCGCT 1 cut(s) 214
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 56
Aor51HI AGCGCT 1 cut(s) 214
AoxI GGCC 2 cut(s) 179, 229
ApeKI GCWGC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 228
BalI TGGCCA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 173
BccI CCATC 3 cut(s) 134, 138, 171
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 58, 228
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 58, 228
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 145, 149
BseMI GCAATG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 2 cut(s) 181, 231
BsiSI CCGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 181, 231
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 121
BspANI GGCC 2 cut(s) 181, 231
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 121
BstF5I GGATG 2 cut(s) 145, 149
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 56, 226
BstV1I GCAGC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 181, 231
BtgZI GCGATG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 2 cut(s) 145, 149
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 229
CviJI RGCY 3 cut(s) 111, 181, 231
CviKI_1 RGCY 3 cut(s) 111, 181, 231
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 179
Eco47III AGCGCT 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 56
FaiI YATR 5 cut(s) 21, 45, 200, 271, 273
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 152, 156
Fsp4HI GCNGC 1 cut(s) 162
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 181, 231
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 215
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 251, 283
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 8, 236
HpyCH4V TGCA 2 cut(s) 35, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 2 cut(s) 8, 236
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 43, 43, 70, 205, 219, 240
Lsp1109I GCAGC 1 cut(s) 173
MaeII ACGT 2 cut(s) 8, 236
MaeIII GTNAC 2 cut(s) 9, 25
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 302
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 2 cut(s) 95, 132
MluNI TGGCCA 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 2 cut(s) 142, 242
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 2 cut(s) 105, 189
Msp20I TGGCCA 1 cut(s) 181
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 58, 228
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 228
NdeII GATC 1 cut(s) 90
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspPI GGNCC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 105, 189
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 58, 228
SetI ASST 4 cut(s) 11, 32, 224, 239
Sse9I AATT 2 cut(s) 95, 132
SsiI CCGC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 56, 226
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 11, 239
TasI AATT 2 cut(s) 95, 132
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 105, 189
Tru9I TTAA 2 cut(s) 105, 189
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.