Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Forward (+)

25345837 .. 25352165

Gene Structure 6329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACCACCAAAGATATACTTCGTCGTCAATCCCCCAAGGTCAGCTGCTTTGAGTTGACACCGAAATCGGGGAGGATAATGGGTGAGAATGCAAAAGGGGTTGCTGAAAGCAGCAGGGATCAGAAAATAGATGTTTATATATGGGACATGGATGAGACTCTGATACTGCTCAAGTCTCTGTTGACCGGAACGTACGCAGAGGGTTTTAATGGGGTGAAGAATGTACAAGAGGGTGTAGAAATTGGAAAGAAATGGGAGAAGCAAATTCTATCTCTATGTGATGATCATTTCTTCTATGAACAGATTGAGAACCACAATAAACCCTATCTTGATGTCTTGCGCCGATATGATGATGGGCGGAATCTTTCTGAATATGATTTCAGCAAAGATGAATTTGGTCCTTCTTATGATGATGATGACAAAAGAAAACTGGCATATAGGCACAGAGTCATAGCCCATAGATACAAACAGGGTTTGCAGAGTCTTCTTAATCAAGAGACGACAAAAGACTTGGATGAATTGTATGATATTACTGATAAATATACAGATAGATGGCTCACGTCAGCACGCGTCTTCTTAGAAGAGTGTTCTGTCGGGAATGGAAGCACATCCGTTGTGGCTGCTGATGGGATAAATGACTCTTCTGCTACAAAGTGTATTCATGTTTTAGTGACATCTGGATCATTGATCCCCAGCCTTGTCAAATGCTTGCTCTTTCGACTTGACAATATGATAGCTCATGAAAATGTCTATAGTTCCTGGGAAGTGGGGAAACTACAATGTTTTCAGTGGATCAAGGCGCGTTTCAATGGTCCAAAGGTCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGGGTGAAGCTGCACAATTGATGCAATGGCCATTTATTAAAATTGATATGCGACCAGGCAGCTCTCACAGGTTTCCAGGCCTCACATTGAGGACGGTAGGATTTTACTTTTCTGTTGTATATGGGAATTCTGATGCTGAAGATGAAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

38.4

Weight (kDa)

5.43

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	570, 802
AciI	CCGC	2 cut(s)	358, 823
AclWI	GGATC	4 cut(s)	126, 682, 688, 800
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	3 cut(s)	264, 392, 979
AfaI	GTAC	2 cut(s)	194, 225
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	808
AjiI	CACGTC	1 cut(s)	561
AjnI	CCWGG	3 cut(s)	758, 907, 928
AluBI	AGCT	4 cut(s)	45, 737, 863, 915
AluI	AGCT	4 cut(s)	45, 737, 863, 915
Alw26I	GTCTC	3 cut(s)	149, 180, 491
AlwI	GGATC	4 cut(s)	126, 682, 688, 800
AoxI	GGCC	2 cut(s)	881, 931
ApeKI	GCWGC	5 cut(s)	45, 111, 620, 863, 912
ApoI	RAATTY	3 cut(s)	264, 392, 979
AspLEI	GCGC	2 cut(s)	342, 802
AspS9I	GGNCC	3 cut(s)	398, 812, 820
AsuHPI	GGTGA	3 cut(s)	95, 226, 869
AvaII	GGWCC	3 cut(s)	398, 812, 820
BalI	TGGCCA	1 cut(s)	883
BbsI	GAAGAC	2 cut(s)	476, 565
BbvI	GCAGC	5 cut(s)	32, 123, 607, 850, 924
BccI	CCATC	5 cut(s)	347, 546, 620, 836, 840
BciT130I	CCWGG	3 cut(s)	760, 909, 930
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	149, 180, 491
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	5 cut(s)	46, 112, 621, 864, 913
BlsI	GCNGC	5 cut(s)	47, 113, 622, 865, 914
Bme1390I	CCNGG	3 cut(s)	760, 909, 930
Bme18I	GGWCC	3 cut(s)	398, 812, 820
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	3 cut(s)	398, 812, 820
BmrFI	CCNGG	3 cut(s)	760, 909, 930
BmsI	GCATC	2 cut(s)	864, 976
BpiI	GAAGAC	2 cut(s)	476, 565
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	36, 759
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	884
BseBI	CCWGG	3 cut(s)	760, 909, 930
BseDI	CCNNGG	2 cut(s)	36, 759
BseGI	GGATG	5 cut(s)	157, 520, 608, 847, 851
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	884
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	5 cut(s)	32, 123, 607, 850, 924
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	849
Bsh1236I	CGCG	2 cut(s)	570, 802
BshFI	GGCC	2 cut(s)	883, 933
BsiSI	CCGG	1 cut(s)	186
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	3 cut(s)	149, 180, 491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	883, 933
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	118, 283, 680, 687, 792
BspACI	CCGC	2 cut(s)	358, 823
BspANI	GGCC	2 cut(s)	883, 933
BspFNI	CGCG	2 cut(s)	570, 802
BspHI	TCATGA	1 cut(s)	739
BspPI	GGATC	4 cut(s)	126, 682, 688, 800
BsrDI	GCAATG	1 cut(s)	884
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	36, 759
BssMI	GATC	5 cut(s)	118, 283, 680, 687, 792
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	760, 909, 930
Bst4CI	ACNGT	1 cut(s)	949
Bst6I	CTCTTC	2 cut(s)	576, 646
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	568, 710
BstDEI	CTNAG	1 cut(s)	577
BstF5I	GGATG	5 cut(s)	157, 520, 608, 847, 851
BstFNI	CGCG	2 cut(s)	570, 802
BstHHI	GCGC	2 cut(s)	342, 802
BstKTI	GATC	5 cut(s)	121, 286, 683, 690, 795
BstMAI	GTCTC	3 cut(s)	149, 180, 491
BstMBI	GATC	5 cut(s)	118, 283, 680, 687, 792
BstNI	CCWGG	3 cut(s)	760, 909, 930
BstSCI	CCNGG	3 cut(s)	758, 907, 928
BstSFI	CTRYAG	1 cut(s)	751
BstUI	CGCG	2 cut(s)	570, 802
BstV1I	GCAGC	5 cut(s)	32, 123, 607, 850, 924
BstV2I	GAAGAC	2 cut(s)	476, 565
BsuRI	GGCC	2 cut(s)	883, 933
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	5 cut(s)	157, 520, 608, 847, 851
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	2 cut(s)	568, 710
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	342, 802
Cfr13I	GGNCC	3 cut(s)	398, 812, 820
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	193, 224
CviAII	CATG	3 cut(s)	148, 662, 740
CviQI	GTAC	2 cut(s)	193, 224
DdeI	CTNAG	1 cut(s)	577
DpnI	GATC	5 cut(s)	120, 285, 682, 689, 794
DpnII	GATC	5 cut(s)	118, 283, 680, 687, 792
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	2 cut(s)	576, 646
EarI	CTCTTC	2 cut(s)	576, 646
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	933
Eco47I	GGWCC	3 cut(s)	398, 812, 820
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	3 cut(s)	758, 907, 928
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	3 cut(s)	151, 665, 743
FalI	AAGNNNNNCTT	3 cut(s)	35, 809, 841
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	3 cut(s)	147, 661, 739
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	46, 112, 621, 864, 913
FokI	GGATG	5 cut(s)	164, 527, 595, 854, 858
Fsp4HI	GCNGC	5 cut(s)	46, 112, 621, 864, 913
GlaI	GCGC	2 cut(s)	341, 801
GluI	GCNGC	5 cut(s)	46, 112, 621, 864, 913
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	883, 933
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	342, 802
Hin1II	CATG	3 cut(s)	151, 665, 743
Hin6I	GCGC	2 cut(s)	340, 800
HinP1I	GCGC	2 cut(s)	340, 800
HincII	GTYRAC	2 cut(s)	57, 183
HindII	GTYRAC	2 cut(s)	57, 183
HinfI	GANTC	5 cut(s)	157, 361, 447, 481, 638
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	95, 226, 869
Hpy166II	GTNNAC	2 cut(s)	57, 183
Hpy188I	TCNGA	4 cut(s)	123, 162, 370, 985
Hpy188III	TCNNGA	5 cut(s)	329, 494, 595, 678, 740
Hpy8I	GTNNAC	2 cut(s)	57, 183
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4IV	ACGT	2 cut(s)	191, 560
HpyCH4V	TGCA	4 cut(s)	92, 478, 866, 877
HpyF3I	CTNAG	1 cut(s)	577
HpySE526I	ACGT	2 cut(s)	191, 560
Hsp92II	CATG	3 cut(s)	151, 665, 743
HspAI	GCGC	2 cut(s)	340, 800
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	118, 283, 680, 687, 792
Lsp1109I	GCAGC	5 cut(s)	32, 123, 607, 850, 924
LweI	GCATC	2 cut(s)	864, 976
MaeII	ACGT	2 cut(s)	191, 560
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	5 cut(s)	120, 285, 682, 689, 794
MboI	GATC	5 cut(s)	118, 283, 680, 687, 792
MboII	GAAGA	7 cut(s)	229, 283, 476, 565, 593, 633, 1004
MfeI	CAATTG	1 cut(s)	869
MlsI	TGGCCA	1 cut(s)	883
MluCI	AATT	8 cut(s)	240, 264, 392, 518, 834, 869, 894, 979
MluI	ACGCGT	1 cut(s)	568
MluNI	TGGCCA	1 cut(s)	883
MlyI	GAGTC	4 cut(s)	151, 456, 490, 632
MnlI	CCTC	7 cut(s)	66, 193, 223, 844, 847, 936, 944
Mox20I	TGGCCA	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	883
MseI	TTAA	3 cut(s)	207, 489, 891
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	883
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	760, 909, 930
MunI	CAATTG	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	3 cut(s)	760, 909, 930
MvnI	CGCG	2 cut(s)	570, 802
NdeII	GATC	5 cut(s)	118, 283, 680, 687, 792
NlaIII	CATG	3 cut(s)	151, 665, 743
NmuCI	GTSAC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	933
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	361
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	47, 113, 622, 865, 914
PleI	GAGTC	4 cut(s)	151, 455, 489, 632
PpsI	GAGTC	4 cut(s)	151, 455, 489, 632
Psp6I	CCWGG	3 cut(s)	758, 907, 928
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	3 cut(s)	758, 907, 928
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	3 cut(s)	398, 812, 820
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	194, 225
RsaNI	GTAC	2 cut(s)	193, 224
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	3 cut(s)	207, 489, 891
SatI	GCNGC	5 cut(s)	46, 112, 621, 864, 913
Sau3AI	GATC	5 cut(s)	118, 283, 680, 687, 792
Sau96I	GGNCC	3 cut(s)	398, 812, 820
SchI	GAGTC	4 cut(s)	151, 456, 490, 632
ScrFI	CCNGG	3 cut(s)	760, 909, 930
SetI	ASST	9 cut(s)	42, 47, 194, 563, 739, 822, 865, 917, 926
SfaNI	GCATC	2 cut(s)	864, 976
SfcI	CTRYAG	1 cut(s)	751
SinI	GGWCC	3 cut(s)	398, 812, 820
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	8 cut(s)	240, 264, 392, 518, 834, 869, 894, 979
SseBI	AGGCCT	1 cut(s)	933
SsiI	CCGC	2 cut(s)	358, 823
StuI	AGGCCT	1 cut(s)	933
StyD4I	CCNGG	3 cut(s)	758, 907, 928
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	949
TaiI	ACGT	2 cut(s)	194, 563
TaqI	TCGA	1 cut(s)	718
TasI	AATT	8 cut(s)	240, 264, 392, 518, 834, 869, 894, 979
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	3 cut(s)	207, 489, 891
Tru9I	TTAA	3 cut(s)	207, 489, 891
TscAI	CASTG	1 cut(s)	794
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	5 cut(s)	45, 111, 620, 863, 912
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	5 cut(s)	312, 405, 531, 650, 756
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	398, 812, 820
XapI	RAATTY	3 cut(s)	264, 392, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.