Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011900

Physical Location & Seq

Genomic Coordinates Forward (+)

13131482 .. 13138196

Gene Structure 6715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTGAGAATGCAAGTACTGGAAAAGGGTTTGCTGAAAGCAGCAGGGATGAGAAACTAGATGTTTATATATGGGACATGGATGAGACTCTCATACTGCTCAAGTCTTTGTTGACTGGAACTTACGCGGAGGGTTTCAATGGGGTGAAGAATGTGCAAGAGGGTGTAGAAATCGGAAAGAATTGGGAGAAGCAAATTCTATCTCTGTGTGATGATCATTTCTTTTATGAACAAATTGAGAACCATAATAAACCCTATCTTGATGTCTTGAGCCGATATGATGATGGACGCAATCTTTCTGAATATGATTTCAGCAAAGATGAATTTGGTGCTTCTTATGATGATGACAACAAAAGAAAACTGGCATATAGGCACAGAGTCATAGCCCAGAGATATAAACAGGGTCTGCAGAGTTTTCTTAATCAAGAGACGAAAAAAGACTTGGATGAATTGTATGATATGACTGATAATTATACAGATAGATGGCTCAGCTCAGCACATGGCTTCTTAGAAGAGTGTTCTGTTGGTAATGGAGGCACATCCATTGTGGCTGCTGATGGGTTAAATGACTCTTCTACTACAAAGTGTATTCATCTTTTAGTGACATCAGGATCATTGATCCCCAGCCTTGTCAAATGCTTGCTCTTTCGACTCGACAATATGATAGCTCATGAAAATGTCTATAGTTCGTGGGAAGTAGGGAAACTACAATGTTTTCAGTGGATCAAGGCGCGTTTCAATGACCCAAAGGTCCGCTTCTGCGTAATTGGGGATGGATGGGAGGAGGGGGAAGCTGCACAATTGATGCAATGGCCATTTATTAAAATTGACATGCAACCAGGCAGCTCTCACAGGTTTCCAGGCCTCACATTGAGGACGGTAGGATTTTACTTTGCTGTTGTATATGGGAATTCTGATGCTGAAGATGAAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006325 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010604 GO:0016043 GO:0016311 GO:0016569 GO:0016570 GO:0016576 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030946 GO:0031323 GO:0031325 GO:0032502 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

35.63

Weight (kDa)

4.82

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35320
fragaria_vesca	FvH4_5g21740 FvH4_5g21740 FvH4_5g21740
malus_domestica	MD06G1032400.v1.1
prunus_persica	Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1 Prupe.5G039700_v2.0.a1
pyrus_communis	pycom06g02680
rosa_chinensis	RchiOBHm_Chr7g0209231
rosa_laevigata	RLG00000003155
rosa_multiflora	Rmu_sc0001701.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249610
rosa_rugosa	Rorug07G0110400
rosa_samantha	Rh7AG244500 Rh7BG239800 Rh7CG260000 Rh7DG251300
rosa_wichuraiana	Rw7G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
AccII	CGCG	2 cut(s)	128, 733
AciI	CCGC	2 cut(s)	128, 754
AclWI	GGATC	3 cut(s)	613, 619, 731
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	3 cut(s)	195, 323, 910
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	139, 739
AjnI	CCWGG	2 cut(s)	838, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	4 cut(s)	492, 668, 794, 846
AluI	AGCT	4 cut(s)	492, 668, 794, 846
Alw26I	GTCTC	2 cut(s)	80, 422
AlwI	GGATC	3 cut(s)	613, 619, 731
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	812, 862
ApeKI	GCWGC	4 cut(s)	42, 551, 794, 843
ApoI	RAATTY	3 cut(s)	195, 323, 910
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	17, 157
AvaII	GGWCC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	814
BbvI	GCAGC	4 cut(s)	54, 538, 781, 855
BccI	CCATC	5 cut(s)	278, 477, 551, 767, 771
BciT130I	CCWGG	2 cut(s)	840, 861
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	80, 422
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	407, 682
BisI	GCNGC	4 cut(s)	43, 552, 795, 844
BlpI	GCTNAGC	2 cut(s)	488, 493
BlsI	GCNGC	4 cut(s)	44, 553, 796, 845
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	840, 861
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	840, 861
BmsI	GCATC	2 cut(s)	795, 907
Bpu1102I	GCTNAGC	2 cut(s)	488, 493
BpuEI	CTTGAG	2 cut(s)	86, 289
Bse1I	ACTGG	3 cut(s)	25, 121, 366
Bse3DI	GCAATG	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	840, 861
BseGI	GGATG	6 cut(s)	55, 88, 451, 539, 778, 782
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	2 cut(s)	502, 507
BseNI	ACTGG	3 cut(s)	25, 121, 366
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	4 cut(s)	54, 538, 781, 855
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	2 cut(s)	128, 733
BshFI	GGCC	2 cut(s)	814, 864
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	80, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	814, 864
Bsp143I	GATC	4 cut(s)	214, 611, 618, 723
Bsp1720I	GCTNAGC	2 cut(s)	488, 493
BspACI	CCGC	2 cut(s)	128, 754
BspANI	GGCC	2 cut(s)	814, 864
BspCNI	CTCAG	2 cut(s)	501, 506
BspFNI	CGCG	2 cut(s)	128, 733
BspHI	TCATGA	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	3 cut(s)	613, 619, 731
BsrDI	GCAATG	1 cut(s)	815
BsrI	ACTGG	3 cut(s)	25, 121, 366
BssMI	GATC	4 cut(s)	214, 611, 618, 723
Bst2UI	CCWGG	2 cut(s)	840, 861
Bst4CI	ACNGT	1 cut(s)	880
Bst6I	CTCTTC	2 cut(s)	507, 577
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	3 cut(s)	488, 493, 508
BstF5I	GGATG	6 cut(s)	55, 88, 451, 539, 778, 782
BstFNI	CGCG	2 cut(s)	128, 733
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	4 cut(s)	217, 614, 621, 726
BstMAI	GTCTC	2 cut(s)	80, 422
BstMBI	GATC	4 cut(s)	214, 611, 618, 723
BstNI	CCWGG	2 cut(s)	840, 861
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	2 cut(s)	838, 859
BstSFI	CTRYAG	2 cut(s)	407, 682
BstUI	CGCG	2 cut(s)	128, 733
BstV1I	GCAGC	4 cut(s)	54, 538, 781, 855
BsuRI	GGCC	2 cut(s)	814, 864
BtsCI	GGATG	6 cut(s)	55, 88, 451, 539, 778, 782
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	1 cut(s)	641
CaiI	CAGNNNCTG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	4 cut(s)	79, 500, 671, 832
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	488, 493, 508
DpnI	GATC	4 cut(s)	216, 613, 620, 725
DpnII	GATC	4 cut(s)	214, 611, 618, 723
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
EaeI	YGGCCR	1 cut(s)	812
Eam1104I	CTCTTC	2 cut(s)	507, 577
EarI	CTCTTC	2 cut(s)	507, 577
Eco147I	AGGCCT	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	838, 859
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	4 cut(s)	82, 503, 674, 835
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	78, 499, 670, 831
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	43, 552, 795, 844
FokI	GGATG	6 cut(s)	62, 95, 458, 526, 785, 789
Fsp4HI	GCNGC	4 cut(s)	43, 552, 795, 844
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	4 cut(s)	43, 552, 795, 844
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	814, 864
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	4 cut(s)	82, 503, 674, 835
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	4 cut(s)	88, 378, 569, 651
HphI	GGTGA	2 cut(s)	17, 157
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	176, 301, 916
Hpy188III	TCNNGA	5 cut(s)	260, 268, 425, 609, 671
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	880
HpyCH4V	TGCA	6 cut(s)	14, 157, 409, 797, 808, 835
HpyF3I	CTNAG	3 cut(s)	488, 493, 508
Hsp92II	CATG	4 cut(s)	82, 503, 674, 835
HspAI	GCGC	1 cut(s)	731
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	214, 611, 618, 723
Lsp1109I	GCAGC	4 cut(s)	54, 538, 781, 855
LweI	GCATC	2 cut(s)	795, 907
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	4 cut(s)	216, 613, 620, 725
MboI	GATC	4 cut(s)	214, 611, 618, 723
MboII	GAAGA	4 cut(s)	160, 524, 564, 935
MfeI	CAATTG	1 cut(s)	800
MlsI	TGGCCA	1 cut(s)	814
MluNI	TGGCCA	1 cut(s)	814
MlyI	GAGTC	4 cut(s)	82, 387, 563, 645
MnlI	CCTC	7 cut(s)	124, 154, 527, 775, 778, 867, 875
Mox20I	TGGCCA	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	3 cut(s)	420, 563, 822
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	814
MspR9I	CCNGG	2 cut(s)	840, 861
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	2 cut(s)	840, 861
MvnI	CGCG	2 cut(s)	128, 733
NdeII	GATC	4 cut(s)	214, 611, 618, 723
NlaIII	CATG	4 cut(s)	82, 503, 674, 835
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	1 cut(s)	835
PagI	TCATGA	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	864
PctI	GAATGC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	44, 553, 796, 845
PleI	GAGTC	4 cut(s)	82, 386, 563, 645
PpsI	GAGTC	4 cut(s)	82, 386, 563, 645
Psp6I	CCWGG	2 cut(s)	838, 859
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	838, 859
PspPI	GGNCC	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	420, 563, 822
SatI	GCNGC	4 cut(s)	43, 552, 795, 844
Sau3AI	GATC	4 cut(s)	214, 611, 618, 723
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	4 cut(s)	82, 387, 563, 645
ScrFI	CCNGG	2 cut(s)	840, 861
SetI	ASST	6 cut(s)	494, 670, 753, 796, 848, 857
SfaNI	GCATC	2 cut(s)	795, 907
SfcI	CTRYAG	2 cut(s)	407, 682
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	101, 268
SmoI	CTYRAG	2 cut(s)	101, 268
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	2 cut(s)	128, 754
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	838, 859
TaaI	ACNGT	1 cut(s)	880
TaqI	TCGA	2 cut(s)	649, 654
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	420, 563, 822
Tru9I	TTAA	3 cut(s)	420, 563, 822
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	4 cut(s)	42, 551, 794, 843
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	5 cut(s)	243, 336, 462, 581, 687
TspRI	CASTG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	3 cut(s)	195, 323, 910
XceI	RCATGY	1 cut(s)	835
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.