Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Forward (+)

14921473 .. 14923025

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGAAATCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCACTCTGCTTATACCGCTACACCAACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGATTCAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCATTTCTCTCTGGAGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

6.8

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAD	PF02109	10 - 115	2.7e-40	DAD family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	3 cut(s)	63, 110, 209
AclWI	GGATC	2 cut(s)	39, 163
AcsI	RAATTY	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	169, 236
AhlI	ACTAGT	1 cut(s)	14
AluBI	AGCT	2 cut(s)	122, 284
AluI	AGCT	2 cut(s)	122, 284
AlwI	GGATC	2 cut(s)	39, 163
Aor13HI	TCCGGA	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	16
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	327
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	2 cut(s)	15, 323
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	65
BsaWI	WCCGGW	2 cut(s)	228, 274
BseAI	TCCGGA	1 cut(s)	228
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	229, 275
BslFI	GGGAC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	31, 84, 155, 327
BspACI	CCGC	3 cut(s)	63, 110, 209
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	110
BspPI	GGATC	2 cut(s)	39, 163
BssMI	GATC	4 cut(s)	31, 84, 155, 327
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	41, 51
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	27, 310
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	4 cut(s)	34, 87, 158, 330
BstMBI	GATC	4 cut(s)	31, 84, 155, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 143, 215
BstUI	CGCG	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	282
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	3 cut(s)	122, 146, 284
CviKI_1	RGCY	3 cut(s)	122, 146, 284
DdeI	CTNAG	2 cut(s)	27, 310
DpnI	GATC	4 cut(s)	33, 86, 157, 329
DpnII	GATC	4 cut(s)	31, 84, 155, 327
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	41, 51
EarI	CTCTTC	2 cut(s)	41, 51
FaeI	CATG	1 cut(s)	145
FaiI	YATR	4 cut(s)	60, 99, 143, 332
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	327
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	2 cut(s)	15, 323
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	2 cut(s)	229, 275
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	3 cut(s)	76, 127, 232
HpaII	CCGG	2 cut(s)	229, 275
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	29, 82, 183, 202, 229
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 143, 215
HpyF3I	CTNAG	2 cut(s)	27, 310
Hsp92II	CATG	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	31, 84, 155, 327
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	14, 116, 168, 242, 288
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	15, 323
MalI	GATC	4 cut(s)	33, 86, 157, 329
MboI	GATC	4 cut(s)	31, 84, 155, 327
MboII	GAAGA	3 cut(s)	28, 38, 106
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	236, 311, 326
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	2 cut(s)	229, 275
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	62, 143, 215
NdeII	GATC	4 cut(s)	31, 84, 155, 327
NlaIII	CATG	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	76, 127, 232
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	4 cut(s)	31, 84, 155, 327
SetI	ASST	5 cut(s)	96, 124, 135, 286, 324
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	63, 110, 209
SspMI	CTAG	2 cut(s)	15, 323
TaqI	TCGA	2 cut(s)	11, 90
TasI	AATT	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	76, 127, 232
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	2 cut(s)	15, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.