Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Reverse (-)

451044 .. 458140

Gene Structure 7097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGGAAAGCATCATCGTCGTCAACAGCCCAGGACGCGCTTGCCCTCTTCGATTCTTTCCGCTCTGCTTACTCCGCCACTCCCACCACTCTCAAGATCATCGATCTCTATATTGGGTTTGCCGTATCCACAGCCCTCATCCAGGTAGTCTACATGGCTCTTGTTGGATCATTCCCATTCAACTCTTTTCTTTCTGGAGTACTTTCTTGCGTAGGGACAGCAGTCCTTGCTGTTTGTCTCCGTATTCAAGTGAACAAAGAAAACAAAGAATTTAAGGATTTAGCACCTGAACGGGCTTTTGCTGATTTTGTTCTCTGCAACGTGGTGCTGCATTTGGTGATCATGAATTTCCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

120

Amino Acids

12.79

Weight (kDa)

6.53

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAD	PF02109	17 - 119	5.6e-40	DAD family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	61, 75
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	269, 346
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	181, 248
AjnI	CCWGG	2 cut(s)	30, 141
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	269, 346
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	32, 143
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	32, 143
BmrFI	CCNGG	2 cut(s)	32, 143
BmsI	GCATC	1 cut(s)	20
BoxI	GACNNNNGTC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	30, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	32, 143
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	30, 352
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	96, 103, 167, 339
BspACI	CCGC	2 cut(s)	61, 75
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	342
BspPI	GGATC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	30, 352
BssMI	GATC	4 cut(s)	96, 103, 167, 339
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	32, 143
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	4 cut(s)	99, 106, 170, 342
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	4 cut(s)	96, 103, 167, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
BstNI	CCWGG	2 cut(s)	32, 143
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	30, 141
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	315
Bsu15I	ATCGAT	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	136
BsuTUI	ATCGAT	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	154, 343
CviJI	RGCY	4 cut(s)	29, 134, 158, 296
CviKI_1	RGCY	4 cut(s)	29, 134, 158, 296
CviQI	GTAC	1 cut(s)	200
DpnI	GATC	4 cut(s)	98, 105, 169, 341
DpnII	GATC	4 cut(s)	96, 103, 167, 339
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	30, 141
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	157, 346
FaiI	YATR	3 cut(s)	111, 155, 344
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	153, 342
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	329
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	157, 346
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	24, 151, 253
Hpy188III	TCNNGA	3 cut(s)	94, 195, 343
Hpy8I	GTNNAC	3 cut(s)	24, 151, 253
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	318, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	157, 346
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	96, 103, 167, 339
LpnPI	CCDG	6 cut(s)	17, 44, 128, 155, 180, 300
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	321
MalI	GATC	4 cut(s)	98, 105, 169, 341
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	4 cut(s)	96, 103, 167, 339
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	2 cut(s)	269, 346
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	56, 146
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	32, 143
MvaI	CCWGG	2 cut(s)	32, 143
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
NdeII	GATC	4 cut(s)	96, 103, 167, 339
NlaIII	CATG	2 cut(s)	157, 346
PagI	TCATGA	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	30, 141
PspGI	CCWGG	2 cut(s)	30, 141
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	96, 103, 167, 339
ScaI	AGTACT	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	32, 143
SetI	ASST	3 cut(s)	147, 289, 324
SfaNI	GCATC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	269, 346
SsiI	CCGC	2 cut(s)	61, 75
StyD4I	CCNGG	2 cut(s)	30, 141
StyI	CCWWGG	1 cut(s)	352
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	51, 102
TasI	AATT	2 cut(s)	269, 346
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	269, 346
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.