Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Forward (+)

68269368 .. 68270000

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0501600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAACTACAAACCCAGCAACCAACAGAGGATGGAGGAAGCAACAAAGTAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCACCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACGTGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCTCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTTCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

210

Amino Acids

23.34

Weight (kDa)

9.11

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	1.7e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AciI	CCGC	4 cut(s)	82, 447, 549, 628
AclWI	GGATC	4 cut(s)	188, 363, 382, 463
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	220, 476
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	4 cut(s)	130, 193, 583, 608
AluI	AGCT	4 cut(s)	130, 193, 583, 608
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	4 cut(s)	188, 363, 382, 463
Ama87I	CYCGRG	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	147, 335, 515
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	585
BccI	CCATC	3 cut(s)	26, 427, 533
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	1 cut(s)	628
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	37, 292
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	598
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	191, 258
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	300, 585
Bsp143I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	4 cut(s)	82, 447, 549, 628
BspCNI	CTCAG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	626
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 463
BspTNI	GGTCTC	1 cut(s)	258
BssMI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	584
BstEII	GGTNACC	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	7 cut(s)	109, 183, 213, 311, 358, 377, 458
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
BstNSI	RCATGY	1 cut(s)	73
BstPI	GGTNACC	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	180, 374, 455
BstYI	RGATCY	3 cut(s)	180, 374, 455
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	7 cut(s)	70, 293, 301, 350, 496, 500, 523
CviJI	RGCY	9 cut(s)	53, 130, 193, 316, 564, 583, 588, 608, 627
CviKI_1	RGCY	9 cut(s)	53, 130, 193, 316, 564, 583, 588, 608, 627
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 457
DpnII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	255
Eco91I	GGTNACC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	7 cut(s)	73, 296, 304, 353, 499, 503, 526
FatI	CATG	7 cut(s)	69, 292, 300, 349, 495, 499, 522
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	1 cut(s)	628
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	7 cut(s)	73, 296, 304, 353, 499, 503, 526
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	147, 335, 515
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	4 cut(s)	177, 286, 538, 624
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 578
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	225, 465
HpyCH4V	TGCA	3 cut(s)	304, 383, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	2 cut(s)	225, 465
Hsp92II	CATG	7 cut(s)	73, 296, 304, 353, 499, 503, 526
Kzo9I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
LmnI	GCTCC	2 cut(s)	84, 624
MaeII	ACGT	2 cut(s)	225, 465
MaeIII	GTNAC	3 cut(s)	153, 334, 551
MalI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 457
MboI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 538
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 455
MhlI	GDGCHC	2 cut(s)	300, 585
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	2 cut(s)	366, 423
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	193, 630
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
NlaIII	CATG	7 cut(s)	73, 296, 304, 353, 499, 503, 526
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	2 cut(s)	153, 551
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	558
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	3 cut(s)	180, 374, 455
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	366, 423
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 455
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	300, 585
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	82, 447, 549, 628
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	228, 468
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 423
Tru9I	TTAA	2 cut(s)	366, 423
TseFI	GTSAC	2 cut(s)	153, 551
Tsp45I	GTSAC	2 cut(s)	153, 551
TspDTI	ATGAA	3 cut(s)	281, 476, 539
VpaK11BI	GGWCC	1 cut(s)	276
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.