Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Reverse (-)

976095 .. 978953

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGAAGCCGCCGTCGTCGTCATCGTCGTCGTCGTCGACGACCCAGGACGCCCTTGCCCTTTTCAATTCGCTGAGATCGGCTTACTCTGCCACTCCTACCTCTCTCAAGGTGATTGATCTCTATGTGGGTTTCGCTGTATCCACTGCCATCATCCAGGTCGTCTACATGGCTCTTGTTGGATCATTCCCATTTAACTCTTTTCTCTCTGGAGTACTCTCATGCATAGGGACAGCAGTCCTTGCTGTTTGCCTTCGTATTCAAGTGAACAAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGGGCTTTTGCAGATTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATGAATTTCCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

125

Amino Acids

13.29

Weight (kDa)

7.71

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAD	PF02109	22 - 124	8.4e-40	DAD family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	38, 165
AciI	CCGC	2 cut(s)	11, 307
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	284, 361
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	67, 263
AjnI	CCWGG	2 cut(s)	45, 156
AlwI	GGATC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	284, 361
AsuHPI	GGTGA	3 cut(s)	16, 124, 364
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	47, 158
BciVI	GTATCC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	11, 344
BlsI	GCNGC	2 cut(s)	12, 345
BmcAI	AGTACT	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	47, 158
BmrFI	CCNGG	2 cut(s)	47, 158
BoxI	GACNNNNGTC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	45, 367
BsaWI	WCCGGW	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	47, 158
BseDI	CCNNGG	2 cut(s)	45, 367
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	77, 118, 182, 354
BspACI	CCGC	2 cut(s)	11, 307
BspCNI	CTCAG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	357
BspPI	GGATC	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	45, 367
BssMI	GATC	4 cut(s)	77, 118, 182, 354
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	47, 158
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	80, 121, 185, 357
BstMBI	GATC	4 cut(s)	77, 118, 182, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 242
BstNI	CCWGG	2 cut(s)	47, 158
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	45, 156
BstV1I	GCAGC	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	357
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	169, 222, 358
CviJI	RGCY	4 cut(s)	10, 83, 173, 311
CviKI_1	RGCY	4 cut(s)	10, 83, 173, 311
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	79, 120, 184, 356
DpnII	GATC	4 cut(s)	77, 118, 182, 354
Eco130I	CCWWGG	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	45, 156
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	172, 225, 361
FaiI	YATR	5 cut(s)	126, 170, 223, 227, 359
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	168, 221, 357
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	2 cut(s)	38, 165
Fnu4HI	GCNGC	2 cut(s)	11, 344
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	11, 344
GluI	GCNGC	2 cut(s)	11, 344
GsuI	CTGGAG	1 cut(s)	231
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	172, 225, 361
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	16, 124, 364
Hpy166II	GTNNAC	3 cut(s)	39, 166, 268
Hpy188III	TCNNGA	2 cut(s)	210, 358
Hpy8I	GTNNAC	3 cut(s)	39, 166, 268
Hpy99I	CGWCG	7 cut(s)	19, 22, 31, 34, 37, 40, 43
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	225, 317, 333, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 242
HpyF3I	CTNAG	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	172, 225, 361
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	77, 118, 182, 354
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	32, 59, 143, 170, 195, 315
Lsp1109I	GCAGC	1 cut(s)	330
MalI	GATC	4 cut(s)	79, 120, 184, 356
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	77, 118, 182, 354
MluCI	AATT	4 cut(s)	67, 284, 334, 361
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	2 cut(s)	195, 288
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	47, 158
MvaI	CCWGG	2 cut(s)	47, 158
MwoI	GCNNNNNNNGC	2 cut(s)	89, 242
NdeII	GATC	4 cut(s)	77, 118, 182, 354
NlaIII	CATG	3 cut(s)	172, 225, 361
NsiI	ATGCAT	1 cut(s)	227
PagI	TCATGA	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	5 cut(s)	23, 26, 32, 35, 38
PkrI	GCNGC	2 cut(s)	12, 345
PshAI	GACNNNNGTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	45, 156
PspGI	CCWGG	2 cut(s)	45, 156
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	195, 288
SatI	GCNGC	2 cut(s)	11, 344
Sau3AI	GATC	4 cut(s)	77, 118, 182, 354
ScaI	AGTACT	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	47, 158
SetI	ASST	3 cut(s)	104, 114, 162
SgrDI	CGTCGACG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	67, 284, 334, 361
SsiI	CCGC	2 cut(s)	11, 307
StyD4I	CCNGG	2 cut(s)	45, 156
StyI	CCWWGG	1 cut(s)	367
TaqI	TCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	67, 284, 334, 361
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	195, 288
Tru9I	TTAA	2 cut(s)	195, 288
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	284, 361
XmiI	GTMKAC	2 cut(s)	38, 165
ZrmI	AGTACT	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.