Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Forward (+)

68254373 .. 68254588

Gene Structure 216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0501500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAAAAGAAGGGCTGTTCTCCTAATGGCTGGACCTATAACACAATTATCCGAGGGTTGATTAATAACAATGAGACATCATGGGCTATGGGACTTATTCAAGAAATGGTTGAGAGGGGTTTCTTTGTAGATGCATCAACTATGGAATTGATAATTGGTTTATTGTCTAAGGATATAGTAGATCCTGCTTTGTTGCCGTTGTTAAAAGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

71

Amino Acids

7.9

Weight (kDa)

4.61

Isoelectric Point (pI)

10.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 21	1e-05	PPR repeat family
PPR_1	PF12854	4 - 37	4e-07	PPR repeat
PPR	PF01535	11 - 41	2.4e-06	PPR repeat
PPR_2	PF13041	12 - 54	9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	121, 143
BsaJI	CCNNGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	212
BspPI	GGATC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
CciI	TCATGA	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	81, 213
CviJI	RGCY	3 cut(s)	15, 30, 86
CviKI_1	RGCY	3 cut(s)	15, 30, 86
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	136
FaeI	CATG	2 cut(s)	84, 216
FaiI	YATR	6 cut(s)	39, 82, 89, 143, 176, 214
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	80, 212
Hin1II	CATG	2 cut(s)	84, 216
HinfI	GANTC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	101, 213
HpyAV	CCTTC	1 cut(s)	4
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	84, 216
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	2 cut(s)	16, 198
LweI	GCATC	2 cut(s)	121, 143
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	3 cut(s)	45, 146, 153
MnlI	CCTC	2 cut(s)	47, 108
Mph1103I	ATGCAT	1 cut(s)	136
MseI	TTAA	2 cut(s)	63, 203
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	84, 216
NsiI	ATGCAT	1 cut(s)	136
PagI	TCATGA	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	63, 203
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	121, 143
SgeI	CNNG	5 cut(s)	43, 65, 93, 113, 197
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	3 cut(s)	45, 146, 153
TasI	AATT	3 cut(s)	45, 146, 153
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	63, 203
Tru9I	TTAA	2 cut(s)	63, 203
TspDTI	ATGAA	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.