Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Reverse (-)

1791879 .. 1793725

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1007700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGGAAAGCATCACACTCGTCAACGGCCCAGGATGCGGTTGCTCTCTTCGATTCTCTTCGCTCAGCTTACTCCGCCACTCCCACCACTCTCAAGATCATTGATCTCTATATTGGGTTCGCCGTATCCACAGCTCTTATCCAGGTAGTCTACATGGCTATTGTCGGGTCATTCCCATTCAACTCTTTCCTTTCAGGAGTACTTTCTTGCATCGGGACGGCAGTCCTTGCTGTTTGTCTCCGTATTCAAGTGAACAAAGAAAATAAAGAATTTAAGGATTTAGCACCGGAACGGGCTTTTGCAGATTTTGTTCTCTGCAACTTGGTGCTGCATATGGTGATCATGAATTTCCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

120

Amino Acids

12.84

Weight (kDa)

6.7

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAD	PF02109	17 - 119	2.8e-39	DAD family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	38, 75
AcsI	RAATTY	2 cut(s)	269, 346
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	181, 248
AjnI	CCWGG	2 cut(s)	30, 141
AluBI	AGCT	2 cut(s)	68, 134
AluI	AGCT	2 cut(s)	68, 134
Alw26I	GTCTC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	269, 346
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	315
BceAI	ACGGC	3 cut(s)	42, 107, 234
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	32, 143
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	330
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	32, 143
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	32, 143
BmsI	GCATC	3 cut(s)	20, 25, 219
BoxI	GACNNNNGTC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	30, 352
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	32, 143
BseDI	CCNNGG	2 cut(s)	30, 352
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	315
BshFI	GGCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	96, 103, 339
Bsp1720I	GCTNAGC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	38, 75
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	30, 352
BssMI	GATC	3 cut(s)	96, 103, 339
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	32, 143
Bst6I	CTCTTC	2 cut(s)	53, 63
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	99, 106, 342
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	96, 103, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
BstNI	CCWGG	2 cut(s)	32, 143
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	30, 141
BstV1I	GCAGC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	40
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	154, 343
CviJI	RGCY	5 cut(s)	29, 68, 134, 158, 296
CviKI_1	RGCY	5 cut(s)	29, 68, 134, 158, 296
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	98, 105, 341
DpnII	GATC	3 cut(s)	96, 103, 339
Eam1104I	CTCTTC	2 cut(s)	53, 63
EarI	CTCTTC	2 cut(s)	53, 63
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	30, 141
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	157, 346
FaiI	YATR	5 cut(s)	111, 155, 333, 335, 344
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	153, 342
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	157, 346
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	24, 151, 253
Hpy188III	TCNNGA	4 cut(s)	94, 195, 214, 343
Hpy8I	GTNNAC	3 cut(s)	24, 151, 253
HpyCH4V	TGCA	4 cut(s)	210, 302, 318, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	157, 346
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	96, 103, 339
LpnPI	CCDG	6 cut(s)	17, 44, 128, 155, 180, 300
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	3 cut(s)	20, 25, 219
MalI	GATC	3 cut(s)	98, 105, 341
MboI	GATC	3 cut(s)	96, 103, 339
MboII	GAAGA	2 cut(s)	40, 50
MluCI	AATT	2 cut(s)	269, 346
MseI	TTAA	1 cut(s)	273
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	32, 143
MvaI	CCWGG	2 cut(s)	32, 143
MwoI	GCNNNNNNNGC	3 cut(s)	35, 74, 227
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	3 cut(s)	96, 103, 339
NlaIII	CATG	2 cut(s)	157, 346
PagI	TCATGA	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	30, 141
PspGI	CCWGG	2 cut(s)	30, 141
PspPI	GGNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	96, 103, 339
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	32, 143
SetI	ASST	3 cut(s)	70, 136, 147
SfaNI	GCATC	3 cut(s)	20, 25, 219
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	269, 346
SsiI	CCGC	2 cut(s)	38, 75
StyD4I	CCNGG	2 cut(s)	30, 141
StyI	CCWWGG	1 cut(s)	352
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	269, 346
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	230
XapI	RAATTY	2 cut(s)	269, 346
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.