Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007802

Physical Location & Seq

Genomic Coordinates Reverse (-)

855683 .. 858512

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGAGGCCTTCGTCATCGTCGTCCTCTACGAGCCAGGACGCCCTTGCCCTTTTCAATTCTCTGAGATCGGCTTACTCCGCCACTCCTACCGCTCTCAAGATCATTGATCTCTATGTTGGTTTCGCTGTATCCACAGCTATCATCCAGGTAGTCTACATGGCTCTTGTTGGATCATTCCCATTTAACTCTTTTCTCTCTGGAGTACTCTCATGCATAGGGACAGCAGTCCTTGCTGTTTGCCTCCGTATTCAAGTGAACAAAGAAAACAAGGACTTTAAGGATTTAGCACCGGAGCGGGCTTTTGCAGATTTTGTTCTCTGCAATTTGGTTCTGCATTTGGTGATCATGAATTTCCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

DAD

Protein Analysis

121

Amino Acids

13.01

Weight (kDa)

7.71

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAD	PF02109	19 - 121	1.3e-39	DAD family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32210 AT1G32210 AT2G35520 AT2G35520 AT2G35520
fragaria_vesca	FvH4_2g00930
malus_domestica	MD05G1007700.v1.1 MD10G1005100.v1.1
prunus_persica	Prupe.8G007900_v2.0.a1 Prupe.8G007900_v2.0.a1
pyrus_communis	pycom10g00410
rosa_chinensis	RchiOBHm_Chr6g0251281
rosa_laevigata	RLG00000015467
rosa_multiflora	Rmu_sc0001637.1_g000007 Rmu_sc0007596.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216850
rosa_rugosa	Rorug05G0501500 Rorug05G0501600
rosa_samantha	Rh6AG010900 Rh6CG007900 Rh6DG008300
rosa_wichuraiana	Rw6G001050 Rw6G001160 Rw6G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	95, 298
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	81, 93, 298
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	58, 254
AjnI	CCWGG	2 cut(s)	36, 147
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	16, 355
BciT130I	CCWGG	2 cut(s)	38, 149
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	142
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	38, 149
BmrFI	CCNGG	2 cut(s)	38, 149
BoxI	GACNNNNGTC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	38, 149
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	68, 102, 109, 173, 345
BspACI	CCGC	3 cut(s)	81, 93, 298
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	348
BspPI	GGATC	1 cut(s)	181
BsrBI	CCGCTC	2 cut(s)	95, 298
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	5 cut(s)	68, 102, 109, 173, 345
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	2 cut(s)	38, 149
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	5 cut(s)	71, 105, 112, 176, 348
BstMBI	GATC	5 cut(s)	68, 102, 109, 173, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 233
BstNI	CCWGG	2 cut(s)	38, 149
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	36, 147
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	348
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	3 cut(s)	160, 213, 349
CviJI	RGCY	6 cut(s)	10, 36, 74, 140, 164, 302
CviKI_1	RGCY	6 cut(s)	10, 36, 74, 140, 164, 302
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	5 cut(s)	70, 104, 111, 175, 347
DpnII	GATC	5 cut(s)	68, 102, 109, 173, 345
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	36, 147
EcoT14I	CCWWGG	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	3 cut(s)	163, 216, 352
FaiI	YATR	5 cut(s)	117, 161, 214, 218, 350
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	3 cut(s)	159, 212, 348
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	163, 216, 352
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	16, 355
Hpy166II	GTNNAC	2 cut(s)	157, 259
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	100, 201, 349
Hpy8I	GTNNAC	2 cut(s)	157, 259
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	216, 308, 324, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 233
HpyF3I	CTNAG	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	163, 216, 352
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	68, 102, 109, 173, 345
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	23, 50, 134, 161, 186, 306
MalI	GATC	5 cut(s)	70, 104, 111, 175, 347
MbiI	CCGCTC	2 cut(s)	95, 298
MboI	GATC	5 cut(s)	68, 102, 109, 173, 345
MluCI	AATT	3 cut(s)	58, 325, 352
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	37, 254
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	2 cut(s)	186, 279
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	38, 149
MvaI	CCWGG	2 cut(s)	38, 149
MwoI	GCNNNNNNNGC	2 cut(s)	80, 233
NdeII	GATC	5 cut(s)	68, 102, 109, 173, 345
NlaIII	CATG	3 cut(s)	163, 216, 352
NsiI	ATGCAT	1 cut(s)	218
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 29
PshAI	GACNNNNGTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	36, 147
PspGI	CCWGG	2 cut(s)	36, 147
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	186, 279
Sau3AI	GATC	5 cut(s)	68, 102, 109, 173, 345
ScaI	AGTACT	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	38, 149
SetI	ASST	2 cut(s)	142, 153
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	58, 325, 352
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	3 cut(s)	81, 93, 298
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	36, 147
StyI	CCWWGG	1 cut(s)	358
TasI	AATT	3 cut(s)	58, 325, 352
TatI	WGTACW	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	186, 279
Tru9I	TTAA	2 cut(s)	186, 279
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	236
XapI	RAATTY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.