AT2G35760

CASP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014118
Physical Location & Seq
Forward (+)
15031679 .. 15033342
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35760.1

Sequence Viewer

Length: 606 bp
ATGAGTTATTTGGGAGTCGGAGTTAGTCCCGGAAACGTCTCCGGAAGTACTACCAAAATGAAGCTGATTGATCGGAAAGTGAGAGTCACGGAGTTGATTCTGAGGTGTTTGGTTTGTGTCCTTGCTCTCGTCGCTGCGATTCTCATTGCTACAGATGTTCAAGTGAGAGAGATTTTCATGATTCAGAAGAAAGCCAAATTCACCGACATGAAGGCGCTTGTGCTTTTGGTGGTCGTCAATGGCATAGCCGCGGGTTATTCTTTGGTTCAGGCGGTTCGTTGCGTGGTGGGTTTGATGAAAGGAAGAGTTTTGTTTAGTAAGCCTCTGGCTTGGGCCATTTTCTTCGGCGATCAGGCAGTAGCATACTTGTGTGTGGCGGGGGTTGCAGCCGCGGCGCAGTCTGCGGCCTTTGCAAAGTTGGGTGAGCCAGAGCTTCAATGGATGAAAATTTGTAATATGTATGGGAAGTTTTGTAACCAAGTGGGTGAAGGAATTGCGAGCGCTTTGTTTGCTTGCATTGGAATGGTTTTGATCTCTTGCATTTCGGCTTTCGGTGTCTTTCGTTTGTACGGCGGAAGCAAATCTAGGCCAAGCTCACGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

201

Amino Acids

21.51

Weight (kDa)

9.64

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 25 - 173 5.4e-47 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35760
fragaria_vesca FvH4_3g00580
malus_domestica MD00G1058300.v1.1 MD10G1336500.v1.1
prunus_persica Prupe.4G007000_v2.0.a1
pyrus_communis pycom05g32590
rosa_chinensis RchiOBHm_Chr5g0000791
rosa_laevigata RLG00000030896
rosa_multiflora Rmu_sc0011992.1_g000001 Rmu_sc0040466.1_g000001
rosa_roxburghii Rroxscaffold_1G00075440
rosa_rugosa Rorug04G0386600
rosa_samantha Rh5AG006500 Rh5BG008400 Rh5CG007100 Rh5DG007100
rosa_wichuraiana Rw5G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 251, 392
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 8 cut(s) 249, 251, 272, 377, 390, 392, 404, 573
AcsI RAATTY 2 cut(s) 197, 447
AfaI GTAC 2 cut(s) 49, 569
AfeI AGCGCT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 161, 437
AleI CACNNNNGTG 1 cut(s) 601
AluBI AGCT 3 cut(s) 64, 433, 594
AluI AGCT 3 cut(s) 64, 433, 594
Alw26I GTCTC 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 41
Aor51HI AGCGCT 1 cut(s) 502
AoxI GGCC 3 cut(s) 333, 405, 587
ApeKI GCWGC 2 cut(s) 134, 386
ApoI RAATTY 2 cut(s) 197, 447
AspLEI GCGC 3 cut(s) 217, 397, 503
AspS9I GGNCC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 193, 434, 497
BbvI GCAGC 2 cut(s) 121, 398
BceAI ACGGC 1 cut(s) 586
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 218, 504
BisI GCNGC 6 cut(s) 135, 249, 387, 390, 393, 405
BlsI GCNGC 6 cut(s) 136, 250, 388, 391, 394, 406
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 249, 390
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse3DI GCAATG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 249, 390
BseGI GGATG 1 cut(s) 447
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 121, 398
Bsh1236I CGCG 2 cut(s) 251, 392
BshFI GGCC 3 cut(s) 335, 407, 589
BsiSI CCGG 2 cut(s) 30, 42
BslFI GGGAC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 43
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 3 cut(s) 335, 407, 589
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 70, 349, 531
BspACI CCGC 8 cut(s) 249, 251, 272, 377, 390, 392, 404, 573
BspANI GGCC 3 cut(s) 335, 407, 589
BspCNI CTCAG 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 41
BspFNI CGCG 2 cut(s) 251, 392
BspHI TCATGA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 249, 390
BssMI GATC 3 cut(s) 70, 349, 531
Bst4CI ACNGT 1 cut(s) 600
Bst6I CTCTTC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 499, 514
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 2 cut(s) 249, 390
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 2 cut(s) 251, 392
BstH2I RGCGCY 2 cut(s) 218, 504
BstHHI GCGC 3 cut(s) 217, 397, 503
BstKTI GATC 3 cut(s) 73, 352, 534
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 70, 349, 531
BstMWI GCNNNNNNNGC 6 cut(s) 131, 383, 392, 401, 410, 509
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 2 cut(s) 251, 392
BstV1I GCAGC 2 cut(s) 121, 398
BsuRI GGCC 3 cut(s) 335, 407, 589
BtgI CCRYGG 2 cut(s) 249, 390
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 499, 514
CciI TCATGA 1 cut(s) 177
CfoI GCGC 3 cut(s) 217, 397, 503
Cfr13I GGNCC 1 cut(s) 333
Cfr42I CCGCGG 2 cut(s) 252, 393
Csp6I GTAC 2 cut(s) 48, 568
CviAII CATG 2 cut(s) 178, 208
CviQI GTAC 2 cut(s) 48, 568
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 72, 351, 533
DpnII GATC 3 cut(s) 70, 349, 531
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 588
Eco47III AGCGCT 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 181, 211
FaiI YATR 6 cut(s) 179, 209, 245, 364, 458, 462
FaqI GGGAC 1 cut(s) 12
FatI CATG 2 cut(s) 177, 207
FauI CCCGC 2 cut(s) 244, 370
Fnu4HI GCNGC 6 cut(s) 135, 249, 387, 390, 393, 405
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 6 cut(s) 135, 249, 387, 390, 393, 405
FspBI CTAG 1 cut(s) 585
GlaI GCGC 3 cut(s) 216, 396, 502
GluI GCNGC 6 cut(s) 135, 249, 387, 390, 393, 405
HaeII RGCGCY 2 cut(s) 218, 504
HaeIII GGCC 3 cut(s) 335, 407, 589
HapII CCGG 2 cut(s) 30, 42
HhaI GCGC 3 cut(s) 217, 397, 503
Hin1II CATG 2 cut(s) 181, 211
Hin6I GCGC 3 cut(s) 215, 395, 501
HinP1I GCGC 3 cut(s) 215, 395, 501
HinfI GANTC 5 cut(s) 15, 84, 97, 139, 181
HpaII CCGG 2 cut(s) 30, 42
HphI GGTGA 3 cut(s) 193, 434, 497
Hpy188I TCNGA 4 cut(s) 20, 75, 102, 186
Hpy188III TCNNGA 2 cut(s) 42, 178
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 205, 482
HpyCH4III ACNGT 1 cut(s) 600
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 386, 413, 516, 540
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 383, 392, 401, 410, 509
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 181, 211
HspAI GCGC 3 cut(s) 215, 395, 501
Kpn2I TCCGGA 1 cut(s) 41
KspI CCGCGG 2 cut(s) 252, 393
Kzo9I GATC 3 cut(s) 70, 349, 531
LpnPI CCDG 6 cut(s) 43, 55, 254, 311, 338, 441
Lsp1109I GCAGC 2 cut(s) 121, 398
MaeI CTAG 1 cut(s) 585
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 85, 473
MalI GATC 3 cut(s) 72, 351, 533
MboI GATC 3 cut(s) 70, 349, 531
MboII GAAGA 3 cut(s) 199, 315, 334
MluCI AATT 3 cut(s) 197, 447, 492
MlyI GAGTC 2 cut(s) 24, 93
MnlI CCTC 2 cut(s) 96, 333
MroI TCCGGA 1 cut(s) 41
MslI CAYNNNNRTG 4 cut(s) 206, 367, 521, 601
MspA1I CMGCKG 2 cut(s) 251, 392
MspI CCGG 2 cut(s) 30, 42
MspR9I CCNGG 1 cut(s) 30
MvnI CGCG 2 cut(s) 251, 392
MwoI GCNNNNNNNGC 6 cut(s) 131, 383, 392, 401, 410, 509
NciI CCSGG 1 cut(s) 30
NdeII GATC 3 cut(s) 70, 349, 531
NlaIII CATG 2 cut(s) 181, 211
NmuCI GTSAC 1 cut(s) 85
OliI CACNNNNGTG 1 cut(s) 601
PagI TCATGA 1 cut(s) 177
PfeI GAWTC 3 cut(s) 97, 139, 181
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 6 cut(s) 136, 250, 388, 391, 394, 406
PleI GAGTC 2 cut(s) 23, 92
PpsI GAGTC 2 cut(s) 23, 92
PspPI GGNCC 1 cut(s) 333
RsaI GTAC 2 cut(s) 49, 569
RsaNI GTAC 2 cut(s) 48, 568
RseI CAYNNNNRTG 4 cut(s) 206, 367, 521, 601
SacII CCGCGG 2 cut(s) 252, 393
SatI GCNGC 6 cut(s) 135, 249, 387, 390, 393, 405
Sau3AI GATC 3 cut(s) 70, 349, 531
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 24, 93
ScrFI CCNGG 1 cut(s) 30
SetI ASST 5 cut(s) 39, 66, 107, 435, 596
SfcI CTRYAG 1 cut(s) 150
Sfr303I CCGCGG 2 cut(s) 252, 393
SgrBI CCGCGG 2 cut(s) 252, 393
SmiMI CAYNNNNRTG 4 cut(s) 206, 367, 521, 601
Sse9I AATT 3 cut(s) 197, 447, 492
SsiI CCGC 8 cut(s) 249, 251, 272, 377, 390, 392, 404, 573
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 600
TaiI ACGT 1 cut(s) 39
TasI AATT 3 cut(s) 197, 447, 492
TatI WGTACW 1 cut(s) 47
TauI GCSGC 4 cut(s) 251, 392, 395, 407
TfiI GAWTC 3 cut(s) 97, 139, 181
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 134, 386
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 74, 166, 224, 311, 458
TspGWI ACGGA 1 cut(s) 104
XapI RAATTY 2 cut(s) 197, 447
XcmI CCANNNNNNNNNTGG 2 cut(s) 435, 597
XspI CTAG 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.