Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014118

Physical Location & Seq

Genomic Coordinates Reverse (-)

31938260 .. 31946604

Gene Structure 8345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCTACTTGGGTGTTGGTGTGAGTCCTGGGAAAGTTCCGGTGTATCACAGCACCAACTTAAAAGTGATTGATCGGAGGGTGAGGTTGGCCGAGTTGGTTTTGAGGTGTGTAATCTGCGGTCTAGGAGTTGTTGCTGCTGCTCTTGTAGGGACTGATACTCAGATCAAAGAGATCTTCACTGTCCAGAAGAAAGCTAAATTTACAGACATGAAAGCTCTTGTGTTTTTGGTGGTGGCTAATGGGATAGTTGCTGCCTACTCTTTGGTGCAAGTGATGCGTTGTGTTGTGAGCATGGTTAGAGGCAATGTGCTCTTCAGCAAGCCCATAGCTTGGATCATTTTCTCGGGCGATCAGGTGATGGCATATGTGAGTGTAGCAGCAGTAGGAGCTGCGGCACAGTCGGCGGTGTTTGCAAAGTTGGGACAGCCAGAGCTGCAATGGATGAAGATATGCAATATGTATGACAAGTTTTGCAACCAAGTTGGGGAGGGAATTGCCAGCGCATTATTGGTCAGTCTAAGCACTGTGCTGCTCTCTTGTGTTTCTGCTTTCAATCTCTTCCGCTTGTACGGTGGCAACAAGAACAAGACCGCCGCCAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

203

Amino Acids

21.77

Weight (kDa)

9.67

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35760
fragaria_vesca	FvH4_3g00580
malus_domestica	MD00G1058300.v1.1 MD10G1336500.v1.1
prunus_persica	Prupe.4G007000_v2.0.a1
pyrus_communis	pycom05g32590
rosa_chinensis	RchiOBHm_Chr5g0000791
rosa_laevigata	RLG00000030896
rosa_multiflora	Rmu_sc0011992.1_g000001 Rmu_sc0040466.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075440
rosa_rugosa	Rorug04G0386600
rosa_samantha	Rh5AG006500 Rh5BG008400 Rh5CG007100 Rh5DG007100
rosa_wichuraiana	Rw5G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AciI	CCGC	6 cut(s)	120, 395, 407, 565, 594, 597
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	4 cut(s)	333, 487, 600, 603
AgsI	TTSAA	1 cut(s)	556
AjnI	CCWGG	2 cut(s)	28, 599
AluBI	AGCT	6 cut(s)	6, 197, 218, 332, 392, 436
AluI	AGCT	6 cut(s)	6, 197, 218, 332, 392, 436
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	7 cut(s)	137, 140, 254, 380, 392, 436, 532
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	94, 370
AvaI	CYCGRG	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	7 cut(s)	124, 127, 241, 379, 392, 423, 519
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	30, 601
BfaI	CTAG	1 cut(s)	125
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	9 cut(s)	138, 141, 255, 381, 393, 396, 437, 533, 597
BlsI	GCNGC	9 cut(s)	139, 142, 256, 382, 394, 397, 438, 534, 598
Bme1390I	CCNGG	2 cut(s)	30, 601
BmeT110I	CYCGRG	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	30, 601
BmsI	GCATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 487, 600, 603
Bse3DI	GCAATG	2 cut(s)	313, 446
BseBI	CCWGG	2 cut(s)	30, 601
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	4 cut(s)	333, 487, 600, 603
BseMI	GCAATG	2 cut(s)	313, 446
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	7 cut(s)	124, 127, 241, 379, 392, 423, 519
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	166, 438
BslI	CCNNNNNNNGG	4 cut(s)	333, 487, 600, 603
BsmFI	GGGAC	2 cut(s)	166, 438
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	73, 165, 174, 336, 352
BspACI	CCGC	6 cut(s)	120, 395, 407, 565, 594, 597
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	313, 446
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	73, 165, 174, 336, 352
Bst2UI	CCWGG	2 cut(s)	30, 601
Bst4CI	ACNGT	4 cut(s)	184, 402, 529, 575
Bst6I	CTCTTC	2 cut(s)	320, 566
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	323, 502
BstDEI	CTNAG	2 cut(s)	162, 521
BstF5I	GGATG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	5 cut(s)	76, 168, 177, 339, 355
BstMBI	GATC	5 cut(s)	73, 165, 174, 336, 352
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 389, 404, 413, 436
BstNI	CCWGG	2 cut(s)	30, 601
BstSCI	CCNGG	2 cut(s)	28, 599
BstV1I	GCAGC	7 cut(s)	124, 127, 241, 379, 392, 423, 519
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	180, 525
Cac8I	GCNNGC	2 cut(s)	323, 502
CfoI	GCGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	2 cut(s)	211, 295
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	162, 521
DpnI	GATC	5 cut(s)	75, 167, 176, 338, 354
DpnII	GATC	5 cut(s)	73, 165, 174, 336, 352
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	320, 566
EarI	CTCTTC	2 cut(s)	320, 566
Eco57I	CTGAAG	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	28, 599
FaeI	CATG	2 cut(s)	214, 298
FaiI	YATR	8 cut(s)	212, 296, 329, 367, 369, 454, 461, 465
FaqI	GGGAC	2 cut(s)	166, 438
FatI	CATG	2 cut(s)	210, 294
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	9 cut(s)	138, 141, 255, 381, 393, 396, 437, 533, 597
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	9 cut(s)	138, 141, 255, 381, 393, 396, 437, 533, 597
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	9 cut(s)	138, 141, 255, 381, 393, 396, 437, 533, 597
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	2 cut(s)	214, 298
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	94, 370
Hpy188I	TCNGA	2 cut(s)	78, 165
Hpy188III	TCNNGA	1 cut(s)	187
HpyCH4III	ACNGT	4 cut(s)	184, 402, 529, 575
HpyCH4V	TGCA	5 cut(s)	271, 416, 439, 456, 477
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 389, 404, 413, 436
HpyF3I	CTNAG	2 cut(s)	162, 521
Hsp92II	CATG	2 cut(s)	214, 298
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	5 cut(s)	73, 165, 174, 336, 352
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	15, 42, 54, 200, 341, 444, 514, 586
Lsp1109I	GCAGC	7 cut(s)	124, 127, 241, 379, 392, 423, 519
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	125
MalI	GATC	5 cut(s)	75, 167, 176, 338, 354
MboI	GATC	5 cut(s)	73, 165, 174, 336, 352
MboII	GAAGA	5 cut(s)	169, 202, 307, 460, 553
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	200, 495
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	72, 78, 99, 296, 484
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	30, 601
MvaI	CCWGG	2 cut(s)	30, 601
MwoI	GCNNNNNNNGC	5 cut(s)	277, 389, 404, 413, 436
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	5 cut(s)	73, 165, 174, 336, 352
NlaIII	CATG	2 cut(s)	214, 298
NmeAIII	GCCGAG	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	9 cut(s)	139, 142, 256, 382, 394, 397, 438, 534, 598
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	28, 599
PspGI	CCWGG	2 cut(s)	28, 599
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	9 cut(s)	138, 141, 255, 381, 393, 396, 437, 533, 597
Sau3AI	GATC	5 cut(s)	73, 165, 174, 336, 352
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	30, 601
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	267
Sse9I	AATT	2 cut(s)	200, 495
SsiI	CCGC	6 cut(s)	120, 395, 407, 565, 594, 597
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	28, 599
TaaI	ACNGT	4 cut(s)	184, 402, 529, 575
TasI	AATT	2 cut(s)	200, 495
TauI	GCSGC	2 cut(s)	398, 599
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	2 cut(s)	187, 532
TseI	GCWGC	7 cut(s)	137, 140, 254, 380, 392, 436, 532
TspDTI	ATGAA	2 cut(s)	227, 461
TspRI	CASTG	2 cut(s)	187, 532
Van91I	CCANNNNNTGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	2 cut(s)	438, 508
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.