AT2G35910

Zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014222
Physical Location & Seq
Reverse (-)
15072887 .. 15074140
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35910.1

Sequence Viewer

Length: 654 bp
ATGCTTCAATTTACATTGTCTTATATCAAATCGCTGACCAAAAACCTCTCCATTATTTCTCCTCTTCCTCCTCCCAAACCCATTAAACAAAACCATCAAACCAAACCCGCCATGAACAATTTCCAACCACCGCCACCGTCCGAGATGCCGGACTACAACGGCCTCCTCGGCACGGACGACATAGGAGGATTTCGATACGGAATCGGTGTCTCCATCGGGGTCCTCCTCCTCATCACCACCATCACCCTCACCTCATACTATTGCACACGTAACCAGCTCTCTTCTTCACCTTCACAAACCAACCAAGATTCAACACGTATCCATCACCATCACCACCATGTCATCATCGACGTTGTCCCCGGTCTTGACGAGGACACCATTCAAAGCTATCCAAAGATTCTCTACTCGGAAGCAAAGGGACCAACAACGGCGTCGTGTTGTGCCATTTGTTTAGGAGACTACAAGGGAAAACATCTGCTGCGGCAGCTACCAGATTGCAACCATCTCTTCCACCTTAAATGTATCGACACGTGGCTTAGACTCAATCCTACGTGTCCTGTGTGTCGGACTTCGCCGCTTCCAACTCCTCTGTCTACTCCCCTCGCCGAGGTTGTCCCTTTAGCCTCCTCCGTGGCCGCCACAAGAATGTCCTAG

Protein Analysis

217

Amino Acids

23.88

Weight (kDa)

8.41

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 146 - 189 3.9e-12 Ring finger domain
zf-rbx1 PF12678 146 - 189 6.5e-08 RING-H2 zinc finger domain
zf-RING_11 PF17123 147 - 175 2.6e-08 RING-like zinc finger
zf-C3HC4 PF00097 147 - 188 5.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 147 - 188 3.9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35910
fragaria_vesca FvH4_6g20630
malus_domestica MD12G1042400.v1.1 MD14G1041600.v1.1
prunus_persica Prupe.7G092500_v2.0.a1
pyrus_communis pycom14g03530
rosa_chinensis RchiOBHm_Chr3g0476521
rosa_laevigata RLG00000023765
rosa_multiflora Rmu_sc0004556.1_g000005 Rmu_sc0015190.1_g000003
rosa_roxburghii Rroxscaffold_6G00405260
rosa_rugosa Rorug03G0154500
rosa_samantha Rh3AG205600 Rh3BG238000 Rh3CG231800 Rh3DG231700
rosa_wichuraiana Rw3G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 593
AciI CCGC 5 cut(s) 108, 131, 481, 575, 636
AcoI YGGCCR 1 cut(s) 633
AcvI CACGTG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 172, 607
AflIII ACRYGT 4 cut(s) 266, 314, 528, 551
AgsI TTSAA 3 cut(s) 8, 312, 383
AluBI AGCT 3 cut(s) 277, 387, 487
AluI AGCT 3 cut(s) 277, 387, 487
Alw26I GTCTC 2 cut(s) 214, 450
AoxI GGCC 2 cut(s) 160, 633
ApeKI GCWGC 2 cut(s) 478, 484
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 220, 419
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 6 cut(s) 226, 235, 241, 279, 317, 323
AvaII GGWCC 2 cut(s) 220, 419
BbrPI CACGTG 1 cut(s) 531
BbvI GCAGC 2 cut(s) 465, 496
BccI CCATC 6 cut(s) 102, 221, 248, 330, 336, 510
BceAI ACGGC 2 cut(s) 175, 444
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 214, 450
BfaI CTAG 1 cut(s) 652
BfuI GTATCC 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 5 cut(s) 479, 482, 485, 575, 636
BlsI GCNGC 5 cut(s) 480, 483, 486, 576, 637
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 220, 419
BmgT120I GGNCC 2 cut(s) 220, 419
BmiI GGNNCC 2 cut(s) 221, 420
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 360
BsaAI YACGTR 4 cut(s) 269, 317, 531, 552
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 166, 358, 606, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 607
BseDI CCNNGG 4 cut(s) 166, 358, 606, 630
BseLI CCNNNNNNNGG 2 cut(s) 172, 607
BseRI GAGGAG 7 cut(s) 51, 60, 155, 215, 218, 576, 616
BseXI GCAGC 2 cut(s) 465, 496
BshFI GGCC 2 cut(s) 162, 635
BsiSI CCGG 2 cut(s) 149, 360
BslFI GGGAC 3 cut(s) 341, 432, 599
BslI CCNNNNNNNGG 2 cut(s) 172, 607
BsmAI GTCTC 2 cut(s) 214, 450
BsmFI GGGAC 3 cut(s) 341, 432, 599
BsnI GGCC 2 cut(s) 162, 635
BspACI CCGC 5 cut(s) 108, 131, 481, 575, 636
BspANI GGCC 2 cut(s) 162, 635
BspLI GGNNCC 2 cut(s) 221, 420
BssECI CCNNGG 4 cut(s) 166, 358, 606, 630
BssNI GRCGYC 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 69, 286, 512
BstACI GRCGYC 1 cut(s) 431
BstBAI YACGTR 4 cut(s) 269, 317, 531, 552
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 1 cut(s) 630
BstENI CCTNNNNNAGG 1 cut(s) 605
BstMAI GTCTC 2 cut(s) 214, 450
BstMWI GCNNNNNNNGC 2 cut(s) 168, 484
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 465, 496
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 2 cut(s) 162, 635
BtgI CCRYGG 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 220, 419
CseI GACGC 1 cut(s) 420
CviAII CATG 2 cut(s) 112, 338
CviJI RGCY 7 cut(s) 162, 277, 387, 487, 535, 623, 635
CviKI_1 RGCY 7 cut(s) 162, 277, 387, 487, 535, 623, 635
DdeI CTNAG 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 3 cut(s) 69, 286, 512
EarI CTCTTC 3 cut(s) 69, 286, 512
Eco47I GGWCC 2 cut(s) 220, 419
Eco72I CACGTG 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 220
FaeI CATG 2 cut(s) 115, 341
FaiI YATR 5 cut(s) 24, 113, 182, 256, 339
FaqI GGGAC 3 cut(s) 341, 432, 599
FatI CATG 2 cut(s) 111, 337
FauI CCCGC 1 cut(s) 115
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 5 cut(s) 479, 482, 485, 575, 636
Fsp4HI GCNGC 5 cut(s) 479, 482, 485, 575, 636
FspBI CTAG 1 cut(s) 652
GluI GCNGC 5 cut(s) 479, 482, 485, 575, 636
HaeIII GGCC 2 cut(s) 162, 635
HapII CCGG 2 cut(s) 149, 360
HgaI GACGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 2 cut(s) 115, 341
HinfI GANTC 4 cut(s) 201, 308, 397, 540
HpaII CCGG 2 cut(s) 149, 360
HphI GGTGA 6 cut(s) 226, 235, 241, 279, 317, 323
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 142, 409, 567
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 594
Hpy99I CGWCG 2 cut(s) 353, 436
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 5 cut(s) 268, 316, 351, 530, 551
HpyCH4V TGCA 2 cut(s) 264, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 484
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 5 cut(s) 268, 316, 351, 530, 551
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 2 cut(s) 115, 341
LpnPI CCDG 5 cut(s) 162, 287, 373, 504, 570
Lsp1109I GCAGC 2 cut(s) 465, 496
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 652
MaeII ACGT 5 cut(s) 268, 316, 351, 530, 551
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 4 cut(s) 56, 273, 276, 499
MluCI AATT 2 cut(s) 8, 118
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 3 cut(s) 148, 545, 605
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 84, 516
MslI CAYNNNNRTG 2 cut(s) 336, 644
MspI CCGG 2 cut(s) 149, 360
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 168, 484
NciI CCSGG 1 cut(s) 360
NlaIII CATG 2 cut(s) 115, 341
NlaIV GGNNCC 2 cut(s) 221, 420
NmeAIII GCCGAG 2 cut(s) 147, 631
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 201, 308, 397
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 5 cut(s) 480, 483, 486, 576, 637
PleI GAGTC 1 cut(s) 534
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 1 cut(s) 534
Ppu21I YACGTR 4 cut(s) 269, 317, 531, 552
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
PspCI CACGTG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 221, 420
PspPI GGNCC 2 cut(s) 220, 419
PspPPI RGGWCCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 353
RseI CAYNNNNRTG 2 cut(s) 336, 644
SaqAI TTAA 2 cut(s) 84, 516
SatI GCNGC 5 cut(s) 479, 482, 485, 575, 636
Sau96I GGNCC 2 cut(s) 220, 419
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 360
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 2 cut(s) 220, 419
SmiMI CAYNNNNRTG 2 cut(s) 336, 644
Sse9I AATT 2 cut(s) 8, 118
SsiI CCGC 5 cut(s) 108, 131, 481, 575, 636
SspMI CTAG 1 cut(s) 652
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 5 cut(s) 271, 319, 354, 533, 554
TaqI TCGA 3 cut(s) 193, 348, 525
TasI AATT 2 cut(s) 8, 118
TauI GCSGC 3 cut(s) 484, 577, 638
TfiI GAWTC 3 cut(s) 201, 308, 397
Tru1I TTAA 2 cut(s) 84, 516
Tru9I TTAA 2 cut(s) 84, 516
TseI GCWGC 2 cut(s) 478, 484
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 3 cut(s) 188, 213, 619
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 220, 419
XagI CCTNNNNNAGG 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.