Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014222

Physical Location & Seq

Genomic Coordinates Forward (+)

20972152 .. 20972855

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAACAGCACGAGTGACACGAGTGGTTTTCTCGGCTCTAACAACATCGGCGGATTTGGCTATGGCGTTGGTGTATCAGTTGGCATCCTTCTTCTCATCACAACCATCACCCTTGCTTCCTACTTCTGCACCAGAACTCAGCCACCAACGCACCCTGCAACGCCGAGGATTAACGCCCACGACCCTCCTGACCTGCAAAGCTTTGTTGTAGATATAGGACTCGATGACAACACTATCAAGAGCTACCCGAAGATGCTCTACTCCGAGGCCAAGCTGCAGAAGACAGGCTCCACTGCTTCCTGCTGCTCTATATGTCTAGCAGATTACAAGGCCACTGATACACTCCGGTTACTTCCAGACTGTGAACACCTCTTTCATCTCAAGTGTGTTGATCCATGGTTGCGGCTTCATCCTACCTGTCCGGTCTGCAGAACATCTCCGCTTCCAACGCCTCTGTCGACTCCTCTGGCTGAGGTGGTGCCATTGGCAAGCAGAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

167

Amino Acids

18.06

Weight (kDa)

6.49

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	99 - 144	8.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	101 - 144	1e-12	Ring finger domain
zf-RING_11	PF17123	102 - 130	8.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	102 - 143	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	102 - 143	6.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35910
fragaria_vesca	FvH4_6g20630
malus_domestica	MD12G1042400.v1.1 MD14G1041600.v1.1
prunus_persica	Prupe.7G092500_v2.0.a1
pyrus_communis	pycom14g03530
rosa_chinensis	RchiOBHm_Chr3g0476521
rosa_laevigata	RLG00000023765
rosa_multiflora	Rmu_sc0004556.1_g000005 Rmu_sc0015190.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405260
rosa_rugosa	Rorug03G0154500
rosa_samantha	Rh3AG205600 Rh3BG238000 Rh3CG231800 Rh3DG231700
rosa_wichuraiana	Rw3G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	3 cut(s)	51, 403, 440
AclWI	GGATC	1 cut(s)	386
AluBI	AGCT	3 cut(s)	201, 243, 274
AluI	AGCT	3 cut(s)	201, 243, 274
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	267, 330
ApeKI	GCWGC	2 cut(s)	274, 303
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BauI	CACGAG	2 cut(s)	10, 19
BbsI	GAAGAC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	261, 290
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	275, 427
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	275, 304, 404
BlsI	GCNGC	3 cut(s)	276, 305, 405
BmiI	GGNNCC	2 cut(s)	289, 480
BmsI	GCATC	2 cut(s)	93, 243
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	164, 264, 395
BsaWI	WCCGGW	2 cut(s)	345, 421
BseDI	CCNNGG	3 cut(s)	164, 264, 395
BseGI	GGATG	2 cut(s)	84, 409
BseMII	CTCAG	2 cut(s)	152, 462
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	261, 290
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	269, 332
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	346, 422
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	269, 332
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	3 cut(s)	51, 403, 440
BspANI	GGCC	2 cut(s)	269, 332
BspCNI	CTCAG	2 cut(s)	151, 463
BspLI	GGNNCC	2 cut(s)	289, 480
BspMAI	CTGCAG	2 cut(s)	279, 431
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	164, 264, 395
BssMI	GATC	1 cut(s)	391
BssSI	CACGAG	2 cut(s)	10, 19
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	2 cut(s)	10, 19
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	138, 471
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	84, 409
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 148, 448
BstSFI	CTRYAG	2 cut(s)	275, 427
BstV1I	GCAGC	2 cut(s)	261, 290
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	269, 332
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	84, 409
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 333
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	490
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	138, 471
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	1 cut(s)	399
FaiI	YATR	5 cut(s)	63, 215, 311, 313, 397
FatI	CATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	275, 304, 404
FokI	GGATG	2 cut(s)	71, 396
Fsp4HI	GCNGC	3 cut(s)	275, 304, 404
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	3 cut(s)	275, 304, 404
HaeIII	GGCC	2 cut(s)	269, 332
HapII	CCGG	2 cut(s)	346, 422
Hin1II	CATG	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	219, 460
HpaII	CCGG	2 cut(s)	346, 422
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	365, 459
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	188, 238, 356
Hpy8I	GTNNAC	2 cut(s)	365, 459
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	5 cut(s)	129, 158, 196, 277, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 148, 448
HpyF3I	CTNAG	2 cut(s)	138, 471
Hsp92II	CATG	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	261, 290
LweI	GCATC	2 cut(s)	93, 243
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	14, 348
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	83, 262, 292
MlyI	GAGTC	2 cut(s)	213, 454
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	7 cut(s)	159, 195, 259, 380, 462, 466, 474
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	346, 422
MwoI	GCNNNNNNNGC	3 cut(s)	57, 148, 448
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	2 cut(s)	289, 480
NmeAIII	GCCGAG	2 cut(s)	12, 189
NmuCI	GTSAC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 455
PkrI	GCNGC	3 cut(s)	276, 305, 405
PleI	GAGTC	2 cut(s)	213, 454
PpsI	GAGTC	2 cut(s)	213, 454
PspN4I	GGNNCC	2 cut(s)	289, 480
PstI	CTGCAG	2 cut(s)	279, 431
SalI	GTCGAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	275, 304, 404
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	2 cut(s)	213, 454
SetI	ASST	7 cut(s)	195, 203, 245, 276, 372, 419, 477
SfaNI	GCATC	2 cut(s)	93, 243
SfcI	CTRYAG	2 cut(s)	275, 427
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SsiI	CCGC	3 cut(s)	51, 403, 440
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	222, 458
TauI	GCSGC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	298, 340
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	274, 303
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	17, 365, 398
TspRI	CASTG	2 cut(s)	298, 340
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.