Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014222

Physical Location & Seq

Genomic Coordinates Forward (+)

4697562 .. 4698005

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1042400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAACGCCACAAGCAACTCCGGCGGCTTCCTTGGCTCCAACAACATTGGTGGTTTTGGTTATGCCATTGGTGTATCAGTTGGTATCCTCTTCCTCATAACAACCATCACCCTTGCCTCCTACTTCTGCACCAAAACTCAGCAGCCTGCTGTCCCGCCCAGACTCAGGATCGCTTACAACACCCTTGATCCGCCCGGTTTACAGAACTTTGTTGTGGACATAGGACTCGATGACAACACGATTGAGAGCTACCCGAAAATGCTCTACTCCGAGGCCAAGCTCCAAAAGAAAGACTCCACTTCCTCCTGCTGCTCCATATGTCTTGTGGATTACAAGGGCAATGACACGCTGTGGCTGCTGCCAGATTGTAGACACGCTTATGACACCCTACATGTCCAGTCTGCAGAAAGTCTCCACTCCCAACGCCCTTGTCAACTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

148

Amino Acids

16.06

Weight (kDa)

5.81

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35910
fragaria_vesca	FvH4_6g20630
malus_domestica	MD12G1042400.v1.1 MD14G1041600.v1.1
prunus_persica	Prupe.7G092500_v2.0.a1
pyrus_communis	pycom14g03530
rosa_chinensis	RchiOBHm_Chr3g0476521
rosa_laevigata	RLG00000023765
rosa_multiflora	Rmu_sc0004556.1_g000005 Rmu_sc0015190.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405260
rosa_rugosa	Rorug03G0154500
rosa_samantha	Rh3AG205600 Rh3BG238000 Rh3CG231800 Rh3DG231700
rosa_wichuraiana	Rw3G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	370
AciI	CCGC	3 cut(s)	24, 155, 191
AclWI	GGATC	2 cut(s)	176, 182
AdeI	CACNNNGTG	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	391
AluBI	AGCT	2 cut(s)	249, 280
AluI	AGCT	2 cut(s)	249, 280
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	176, 182
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	142, 309, 355, 358
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	100
BbvI	GCAGC	4 cut(s)	154, 296, 342, 345
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	442
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	5 cut(s)	25, 143, 310, 356, 359
BlsI	GCNGC	5 cut(s)	26, 144, 311, 357, 360
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	31, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	31, 270
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	152, 178
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	154, 296, 342, 345
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	21, 195
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	168, 187
BspACI	CCGC	3 cut(s)	24, 155, 191
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	151, 177
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	176, 182
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	31, 270
BssMI	GATC	2 cut(s)	168, 187
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	138, 164
BstKTI	GATC	2 cut(s)	171, 190
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	168, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 33, 355
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	154, 296, 342, 345
BsuI	GTATCC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	7 cut(s)	27, 36, 145, 249, 275, 280, 355
CviKI_1	RGCY	7 cut(s)	27, 36, 145, 249, 275, 280, 355
DdeI	CTNAG	2 cut(s)	138, 164
DpnI	GATC	2 cut(s)	170, 189
DpnII	GATC	2 cut(s)	168, 187
DraIII	CACNNNGTG	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	395
FaiI	YATR	7 cut(s)	63, 98, 221, 317, 319, 381, 393
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	25, 143, 310, 356, 359
Fsp4HI	GCNGC	5 cut(s)	25, 143, 310, 356, 359
FspBI	CTAG	1 cut(s)	442
GluI	GCNGC	5 cut(s)	25, 143, 310, 356, 359
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	21, 195
Hin1II	CATG	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	3 cut(s)	162, 225, 293
HpaII	CCGG	2 cut(s)	21, 195
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	4 cut(s)	200, 217, 371, 434
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	4 cut(s)	200, 217, 371, 434
HpyCH4V	TGCA	2 cut(s)	129, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 33, 355
HpyF3I	CTNAG	2 cut(s)	138, 164
Hsp92II	CATG	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	168, 187
LmnI	GCTCC	3 cut(s)	41, 285, 317
LpnPI	CCDG	8 cut(s)	34, 151, 159, 172, 208, 319, 375, 410
Lsp1109I	GCAGC	4 cut(s)	154, 296, 342, 345
MaeI	CTAG	1 cut(s)	442
MalI	GATC	2 cut(s)	170, 189
MboI	GATC	2 cut(s)	168, 187
MboII	GAAGA	1 cut(s)	82
MlyI	GAGTC	3 cut(s)	156, 219, 287
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	98, 104, 127, 265, 313
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	21, 195
MspR9I	CCNGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	21, 33, 355
NciI	CCSGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	2 cut(s)	168, 187
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	395
PciI	ACATGT	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	26, 144, 311, 357, 360
PleI	GAGTC	3 cut(s)	156, 219, 287
PpsI	GAGTC	3 cut(s)	156, 219, 287
PscI	ACATGT	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	378
SatI	GCNGC	5 cut(s)	25, 143, 310, 356, 359
Sau3AI	GATC	2 cut(s)	168, 187
SchI	GAGTC	3 cut(s)	156, 219, 287
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	2 cut(s)	251, 282
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	378
SsiI	CCGC	3 cut(s)	24, 155, 191
SspMI	CTAG	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	1 cut(s)	27
TseI	GCWGC	4 cut(s)	142, 309, 355, 358
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.