Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014222

Physical Location & Seq

Genomic Coordinates Reverse (-)

12510785 .. 12511291

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAACAACACAAGTGACTCTGGTGGCTTCCTTGGTTCCAACAACATTGGTGGCTTTGGTTATGGCATTGGTGTCTCAGTTGGCATCCTCCTGCTCATCACAACCATCACCCTTGCTTCCTACTTCTGCACCAGAACTCAGCAGCCGCCTGCCCCGGCGACACACAGGAACAACAACATCCTTGATCCACCTGACCTGCAAAACTTTGTTGTTGATATAGGACTTGATGACAGCACCATTGAGAGCTACCCGAAGATGCTTTACTCTGAGGCCAAGCTCCAAAAGACAGACTCCACTGCCTCCTGCTGCTCCATATGTCTTGCTGATTACAAGGGCACCGATACACTCCGTCTACTGCCGGATTGTAAACACCTCTTCCACCTCAAGTGTGTTGATCCGTGGCTGCGGCTGCATCCCACCTGTCCCGTCTGCAGAACATCTCCAATCCCAACACCTCTGTCGACTCCTCTGGCAGAGGTGGTTCCATTGGCAAGCAGGCGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

18.24

Weight (kDa)

6.03

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35910
fragaria_vesca	FvH4_6g20630
malus_domestica	MD12G1042400.v1.1 MD14G1041600.v1.1
prunus_persica	Prupe.7G092500_v2.0.a1
pyrus_communis	pycom14g03530
rosa_chinensis	RchiOBHm_Chr3g0476521
rosa_laevigata	RLG00000023765
rosa_multiflora	Rmu_sc0004556.1_g000005 Rmu_sc0015190.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405260
rosa_rugosa	Rorug03G0154500
rosa_samantha	Rh3AG205600 Rh3BG238000 Rh3CG231800 Rh3DG231700
rosa_wichuraiana	Rw3G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	352, 461
AciI	CCGC	2 cut(s)	146, 406
AclWI	GGATC	2 cut(s)	179, 389
AluBI	AGCT	2 cut(s)	246, 277
AluI	AGCT	2 cut(s)	246, 277
Alw26I	GTCTC	2 cut(s)	79, 495
AlwI	GGATC	2 cut(s)	179, 389
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	4 cut(s)	142, 306, 403, 409
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbvI	GCAGC	4 cut(s)	154, 293, 390, 396
BccI	CCATC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	79, 495
BfmI	CTRYAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	204
BisI	GCNGC	6 cut(s)	143, 146, 307, 404, 407, 410
BlsI	GCNGC	6 cut(s)	144, 147, 308, 405, 408, 411
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	3 cut(s)	37, 337, 483
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	93, 246, 421
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	31, 153, 398
BseDI	CCNNGG	3 cut(s)	31, 153, 398
BseGI	GGATG	3 cut(s)	84, 177, 412
BseMII	CTCAG	3 cut(s)	90, 152, 258
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	154, 293, 390, 396
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	155, 359
BslFI	GGGAC	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	79, 495
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	184, 394
BspACI	CCGC	2 cut(s)	146, 406
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	3 cut(s)	89, 151, 259
BspLI	GGNNCC	3 cut(s)	37, 337, 483
BspMAI	CTGCAG	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	179, 389
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	31, 153, 398
BssMI	GATC	2 cut(s)	184, 394
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	150, 493, 497
BstDEI	CTNAG	3 cut(s)	76, 138, 267
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	84, 177, 412
BstKTI	GATC	2 cut(s)	187, 397
BstMAI	GTCTC	2 cut(s)	79, 495
BstMBI	GATC	2 cut(s)	184, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	154, 293, 390, 396
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	84, 177, 412
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	3 cut(s)	150, 493, 497
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviJI	RGCY	8 cut(s)	27, 54, 145, 246, 272, 277, 403, 409
CviKI_1	RGCY	8 cut(s)	27, 54, 145, 246, 272, 277, 403, 409
DdeI	CTNAG	3 cut(s)	76, 138, 267
DpnI	GATC	2 cut(s)	186, 396
DpnII	GATC	2 cut(s)	184, 394
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	4 cut(s)	63, 218, 314, 316
FaqI	GGGAC	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	314
FblI	GTMKAC	2 cut(s)	352, 461
Fnu4HI	GCNGC	6 cut(s)	143, 146, 307, 404, 407, 410
FokI	GGATG	3 cut(s)	71, 164, 399
Fsp4HI	GCNGC	6 cut(s)	143, 146, 307, 404, 407, 410
GluI	GCNGC	6 cut(s)	143, 146, 307, 404, 407, 410
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	155, 359
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	3 cut(s)	17, 290, 463
HpaII	CCGG	2 cut(s)	155, 359
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	353, 368, 462
Hpy188I	TCNGA	1 cut(s)	268
Hpy8I	GTNNAC	3 cut(s)	353, 368, 462
HpyCH4V	TGCA	4 cut(s)	129, 199, 412, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	3 cut(s)	76, 138, 267
Kzo9I	GATC	2 cut(s)	184, 394
LmnI	GCTCC	2 cut(s)	282, 314
Lsp1109I	GCAGC	4 cut(s)	154, 293, 390, 396
LweI	GCATC	3 cut(s)	93, 246, 421
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	186, 396
MboI	GATC	2 cut(s)	184, 394
MboII	GAAGA	2 cut(s)	265, 367
MhlI	GDGCHC	1 cut(s)	338
MlyI	GAGTC	3 cut(s)	11, 284, 457
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	98, 262, 310, 383, 392, 465, 469, 477
MspI	CCGG	2 cut(s)	155, 359
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	409
NciI	CCSGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	2 cut(s)	184, 394
NlaIV	GGNNCC	3 cut(s)	37, 337, 483
NmuCI	GTSAC	1 cut(s)	14
PkrI	GCNGC	6 cut(s)	144, 147, 308, 405, 408, 411
PleI	GAGTC	3 cut(s)	11, 284, 457
PpsI	GAGTC	3 cut(s)	11, 284, 457
PspN4I	GGNNCC	3 cut(s)	37, 337, 483
PstI	CTGCAG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	460
SatI	GCNGC	6 cut(s)	143, 146, 307, 404, 407, 410
Sau3AI	GATC	2 cut(s)	184, 394
SchI	GAGTC	3 cut(s)	11, 284, 457
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	9 cut(s)	193, 198, 248, 279, 375, 384, 422, 457, 480
SfaNI	GCATC	3 cut(s)	93, 246, 421
SfcI	CTRYAG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SsiI	CCGC	2 cut(s)	146, 406
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	461
TauI	GCSGC	2 cut(s)	148, 409
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	142, 306, 403, 409
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	338, 387
TspRI	CASTG	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	352, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.