AT2G36000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016609
Physical Location & Seq
Forward (+)
15117015 .. 15119043
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36000.2

Sequence Viewer

Length: 1002 bp
ATGCAACAAGAAGCTCTCTCTTTCCTCTCGTCCTCTCTCCCTTCCCTTCACCACAATTTTCCCTCTCTTTCTCGCCTCCGCTTCAACAATTTTCCCGCACTTTCCTTCAAACCAAACACTTCATCATCATCTTCATCATTCTTCAAATCCCCAGATATACCCTCTCTCTCCTCCACCACAACAACAACAACAACCACCGAAACCCTAGAATCCTCAATCCACGAGAAACTCATTTACCTCGATTCACTCGGAATCGATTTCCTAACCCTAATCAACCGTCATCCACCTCTCCTCTCCACCGCTCTCTCCGCCGTTGAATCAGTCGTCGATTACATGACCACTCCACCAATAAACTTCACTTTACAAGACTTTCGCCGCCTCGTCTCAATGTGTCCAGAGCTTCTCACTTCACCTTTAACCTCACACACAATCCCAGTCATCACTTTCCTCCTCCGTGAAGTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGCTTTACGACGTCGTCCTCGTCTTCTCGCTTGTAGCGTCGATCACCAGCTTAGACCAACGCTTTACTTTCTCCAGAGAATCGGAATCTTAGATCCGCATAAACATACGTATCTTCTCTCTTGTAGCGTTGACAATAAACTCGTACCACGGATTGATTACTTCGAGAAGTTAGGATTCTCGCGGCGGAGCGCCACCGCGATGTTTAAGAGATTCCCGCAGCTGTTTAATTACAGTATTGCTGAGAATTATGAGCCGAAGTTGAAGTATTTGATGGTGGAGATGGGGAGAGATGTTAGAGAGGTTCTTGAGTTTCCTCAGTATTTCTCGTTTAGTTTGGAGAATCGGATTAAACCGAGACATGAAGCTTGTGCTGCGAAAGGTGTGAGGTTTCCATTGCCGGTGATGTTGAAGACTAATGAAGCTGGTTTTAGAGATACATTGGAGGTATGTTGTGATTCTTCTCCGCCATTGAAGACCTCTCGCCTTGTTACTGTACAAAAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

333

Amino Acids

37.95

Weight (kDa)

8.99

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 151 - 307 4.6e-31 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 2 cut(s) 673, 689
AclWI GGATC 1 cut(s) 578
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 2 cut(s) 636, 987
AgsI TTSAA 7 cut(s) 85, 109, 145, 317, 754, 901, 964
AluBI AGCT 7 cut(s) 14, 400, 494, 541, 712, 857, 914
AluI AGCT 7 cut(s) 14, 400, 494, 541, 712, 857, 914
Alw26I GTCTC 2 cut(s) 388, 841
AlwI GGATC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 709, 863
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 1 cut(s) 683
AsuHPI GGTGA 4 cut(s) 41, 402, 527, 904
BaeI ACNNNNGTAYC 2 cut(s) 584, 617
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 3 cut(s) 506, 908, 971
BbvI GCAGC 2 cut(s) 721, 850
BccI CCATC 2 cut(s) 757, 766
BceAI ACGGC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 388, 841
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 4 cut(s) 376, 674, 710, 864
BlsI GCNGC 4 cut(s) 377, 675, 711, 865
BmrI ACTGGG 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 428
BoxI GACNNNNGTC 1 cut(s) 486
BpiI GAAGAC 3 cut(s) 506, 908, 971
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 818
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 638
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 884
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 2 cut(s) 723, 821
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 3 cut(s) 160, 281, 440
BseXI GCAGC 2 cut(s) 721, 850
Bsh1236I CGCG 2 cut(s) 673, 689
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 388, 841
BsmBI CGTCTC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 2 cut(s) 532, 583
BspCNI CTCAG 2 cut(s) 724, 820
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 2 cut(s) 673, 689
BspPI GGATC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 889
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 2 cut(s) 532, 583
BssNI GRCGYC 1 cut(s) 502
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 278, 725, 985
BstACI GRCGYC 1 cut(s) 502
BstAUI TGTACA 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 600
BstDEI CTNAG 4 cut(s) 542, 580, 732, 807
BstDSI CCRYGG 1 cut(s) 638
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 2 cut(s) 673, 689
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 535, 586
BstMAI GTCTC 2 cut(s) 388, 841
BstMBI GATC 2 cut(s) 532, 583
BstMWI GCNNNNNNNGC 2 cut(s) 308, 863
BstPAI GACNNNNGTC 1 cut(s) 486
BstSNI TACGTA 1 cut(s) 600
BstUI CGCG 2 cut(s) 673, 689
BstV1I GCAGC 2 cut(s) 721, 850
BstV2I GAAGAC 3 cut(s) 506, 908, 971
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 704
BtsCI GGATG 1 cut(s) 280
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 889
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 635, 986
CviAII CATG 2 cut(s) 334, 851
CviJI RGCY 8 cut(s) 14, 400, 494, 541, 712, 745, 857, 914
CviKI_1 RGCY 8 cut(s) 14, 400, 494, 541, 712, 745, 857, 914
CviQI GTAC 2 cut(s) 635, 986
DdeI CTNAG 4 cut(s) 542, 580, 732, 807
DpnI GATC 2 cut(s) 534, 585
DpnII GATC 2 cut(s) 532, 583
EciI GGCGGA 3 cut(s) 298, 691, 945
Eco105I TACGTA 1 cut(s) 600
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 2 cut(s) 337, 854
FaiI YATR 7 cut(s) 158, 335, 591, 597, 741, 852, 940
FatI CATG 2 cut(s) 333, 850
FauI CCCGC 2 cut(s) 103, 714
Fnu4HI GCNGC 4 cut(s) 376, 674, 710, 864
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 376, 674, 710, 864
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 682
GluI GCNGC 4 cut(s) 376, 674, 710, 864
GsuI CTGGAG 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 684
HapII CCGG 1 cut(s) 890
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 2 cut(s) 337, 854
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 469, 622
HindII GTYRAC 2 cut(s) 469, 622
HindIII AAGCTT 2 cut(s) 492, 855
HpaII CCGG 1 cut(s) 890
HphI GGTGA 4 cut(s) 41, 402, 527, 904
Hpy166II GTNNAC 2 cut(s) 469, 622
Hpy188I TCNGA 3 cut(s) 251, 575, 837
Hpy188III TCNNGA 5 cut(s) 395, 565, 655, 797, 999
Hpy8I GTNNAC 2 cut(s) 469, 622
Hpy99I CGWCG 4 cut(s) 329, 504, 507, 533
HpyAV CCTTC 3 cut(s) 51, 56, 115
HpyCH4III ACNGT 3 cut(s) 278, 725, 985
HpyCH4IV ACGT 2 cut(s) 502, 599
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 863
HpyF3I CTNAG 4 cut(s) 542, 580, 732, 807
HpySE526I ACGT 2 cut(s) 502, 599
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 2 cut(s) 337, 854
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 532, 583
LmnI GCTCC 1 cut(s) 678
LpnPI CCDG 7 cut(s) 165, 408, 447, 551, 578, 900, 903
Lsp1109I GCAGC 2 cut(s) 721, 850
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 502, 599
MaeIII GTNAC 1 cut(s) 979
MalI GATC 2 cut(s) 534, 585
MbiI CCGCTC 1 cut(s) 302
MboI GATC 2 cut(s) 532, 583
MboII GAAGA 7 cut(s) 123, 133, 506, 596, 913, 942, 976
MflI RGATCY 1 cut(s) 583
MluCI AATT 4 cut(s) 55, 88, 718, 736
MlyI GAGTC 1 cut(s) 464
MseI TTAA 4 cut(s) 416, 696, 717, 840
MslI CAYNNNNRTG 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 1 cut(s) 890
MvnI CGCG 2 cut(s) 673, 689
MwoI GCNNNNNNNGC 2 cut(s) 308, 863
NdeII GATC 2 cut(s) 532, 583
NlaIII CATG 2 cut(s) 337, 854
PcsI WCGNNNNNNNCGW 2 cut(s) 508, 525
PflFI GACNNNGTC 1 cut(s) 504
PkrI GCNGC 4 cut(s) 377, 675, 711, 865
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 600
PshAI GACNNNNGTC 1 cut(s) 486
PsuI RGATCY 1 cut(s) 583
PsyI GACNNNGTC 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 2 cut(s) 636, 987
RsaNI GTAC 2 cut(s) 635, 986
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 4 cut(s) 416, 696, 717, 840
SatI GCNGC 4 cut(s) 376, 674, 710, 864
Sau3AI GATC 2 cut(s) 532, 583
SchI GAGTC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
SnaBI TACGTA 1 cut(s) 600
Sse9I AATT 4 cut(s) 55, 88, 718, 736
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 278, 725, 985
TaiI ACGT 2 cut(s) 505, 602
TaqI TCGA 5 cut(s) 240, 255, 327, 531, 654
TasI AATT 4 cut(s) 55, 88, 718, 736
TatI WGTACW 1 cut(s) 985
TauI GCSGC 2 cut(s) 378, 676
Tru1I TTAA 4 cut(s) 416, 696, 717, 840
Tru9I TTAA 4 cut(s) 416, 696, 717, 840
TseI GCWGC 2 cut(s) 709, 863
TspDTI ATGAA 4 cut(s) 111, 123, 867, 924
TspGWI ACGGA 3 cut(s) 443, 476, 655
Tth111I GACNNNGTC 1 cut(s) 504
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.