Rh3CG223400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016609
Physical Location & Seq
Reverse (-)
20822348 .. 20822971
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG223400.1

Sequence Viewer

Length: 624 bp
ATGTGCCCCGAAATCCTCGCCTCTCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTTTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAAAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGACAAGGGTGTGTGCTTTCCTTTGCCTATTTTGTTAAAGACCAGTGAGGCCAGGTTCCGGGATAGATTGGAGGTTTGTTGTAATTCTTCTATCCCGTTGAGAAATTCTCCTTTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

207

Amino Acids

24.25

Weight (kDa)

9.5

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 21 - 176 5.2e-34 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 252
AccII CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
AcoI YGGCCR 2 cut(s) 294, 449
AcsI RAATTY 2 cut(s) 574, 595
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 3 cut(s) 67, 303, 528
AgsI TTSAA 2 cut(s) 361, 394
AjnI CCWGG 1 cut(s) 521
AluBI AGCT 4 cut(s) 238, 319, 400, 432
AluI AGCT 4 cut(s) 238, 319, 400, 432
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 4 cut(s) 69, 294, 449, 519
ApeKI GCWGC 2 cut(s) 222, 316
ApoI RAATTY 2 cut(s) 574, 595
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 43, 620
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 2 cut(s) 354, 402
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 234, 328
BccI CCATC 2 cut(s) 53, 185
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 523
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 2 cut(s) 220, 328
BisI GCNGC 3 cut(s) 223, 281, 317
BlsI GCNGC 3 cut(s) 224, 282, 318
Bme1390I CCNGG 2 cut(s) 523, 530
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 85, 311, 527
BmrFI CCNGG 2 cut(s) 523, 530
BmsI GCATC 1 cut(s) 466
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 3 cut(s) 115, 155, 224
BpuEI CTTGAG 2 cut(s) 77, 386
BpuMI CCSGG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 303, 528
Bse1I ACTGG 2 cut(s) 172, 513
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 67, 303, 528
BseNI ACTGG 2 cut(s) 172, 513
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 8
BseX3I CGGCCG 1 cut(s) 449
BseXI GCAGC 2 cut(s) 234, 328
Bsh1236I CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 4 cut(s) 71, 296, 451, 521
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 304, 529
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 67, 303, 528
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 4 cut(s) 71, 296, 451, 521
Bsp1286I GDGCHC 3 cut(s) 8, 354, 402
Bsp1407I TGTACA 1 cut(s) 590
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 4 cut(s) 71, 296, 451, 521
BspFNI CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
BspLI GGNNCC 3 cut(s) 85, 311, 527
BspMAI CTGCAG 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 590
BsrI ACTGG 2 cut(s) 172, 513
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 523
BstACI GRCGYC 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 73, 126
BstDEI CTNAG 1 cut(s) 433
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 3 cut(s) 72, 81, 313
BstNI CCWGG 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 521, 528
BstSFI CTRYAG 2 cut(s) 220, 328
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
BstV1I GCAGC 2 cut(s) 234, 328
BstZI CGGCCG 1 cut(s) 449
BsuRI GGCC 4 cut(s) 71, 296, 451, 521
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 73, 126
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 7 cut(s) 16, 64, 88, 124, 214, 238, 296
Csp6I GTAC 1 cut(s) 591
CviAII CATG 1 cut(s) 298
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 2 cut(s) 294, 449
EagI CGGCCG 1 cut(s) 449
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 400
EclXI CGGCCG 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 354, 402
Eco52I CGGCCG 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 521
EcoT38I GRGCYC 2 cut(s) 354, 402
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 301
FaiI YATR 4 cut(s) 104, 185, 299, 342
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 297
FauI CCCGC 4 cut(s) 80, 254, 276, 321
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 223, 281, 317
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 2 cut(s) 354, 402
Fsp4HI GCNGC 3 cut(s) 223, 281, 317
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 223, 281, 317
GsuI CTGGAG 3 cut(s) 115, 155, 224
HaeIII GGCC 4 cut(s) 71, 296, 451, 521
HapII CCGG 2 cut(s) 304, 529
HgaI GACGC 7 cut(s) 16, 64, 88, 124, 214, 238, 296
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 3 cut(s) 79, 196, 253
HindII GTYRAC 3 cut(s) 79, 196, 253
HinfI GANTC 2 cut(s) 439, 445
HpaII CCGG 2 cut(s) 304, 529
HphI GGTGA 2 cut(s) 43, 620
Hpy166II GTNNAC 5 cut(s) 79, 196, 253, 472, 591
Hpy188I TCNGA 4 cut(s) 34, 88, 444, 462
Hpy8I GTNNAC 5 cut(s) 79, 196, 253, 472, 591
Hpy99I CGWCG 4 cut(s) 114, 194, 230, 254
HpyAV CCTTC 2 cut(s) 64, 388
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 81, 313
HpyF3I CTNAG 1 cut(s) 433
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 89, 243, 397
Lsp1109I GCAGC 2 cut(s) 234, 328
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 40, 549
MhlI GDGCHC 3 cut(s) 8, 354, 402
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 5 cut(s) 343, 361, 553, 574, 595
MluNI TGGCCA 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 304, 529
MspR9I CCNGG 2 cut(s) 523, 530
MvaI CCWGG 1 cut(s) 523
MvnI CGCG 6 cut(s) 27, 66, 75, 99, 249, 280
MwoI GCNNNNNNNGC 3 cut(s) 72, 81, 313
NciI CCSGG 1 cut(s) 530
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 3 cut(s) 85, 311, 527
NmeAIII GCCGAG 1 cut(s) 477
PcsI WCGNNNNNNNCGW 4 cut(s) 24, 132, 186, 258
PfeI GAWTC 2 cut(s) 439, 445
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 3 cut(s) 224, 282, 318
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 3 cut(s) 85, 311, 527
PspPI GGNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
SacI GAGCTC 1 cut(s) 402
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 3 cut(s) 223, 281, 317
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 523, 530
SduI GDGCHC 3 cut(s) 8, 354, 402
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 220, 328
SmlI CTYRAG 2 cut(s) 92, 401
SmoI CTYRAG 2 cut(s) 92, 401
Sse9I AATT 5 cut(s) 343, 361, 553, 574, 595
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 521, 528
TaiI ACGT 1 cut(s) 195
TaqI TCGA 4 cut(s) 228, 252, 261, 348
TasI AATT 5 cut(s) 343, 361, 553, 574, 595
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 2 cut(s) 439, 445
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 520
TseI GCWGC 2 cut(s) 222, 316
TspRI CASTG 1 cut(s) 520
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 2 cut(s) 574, 595
XmiI GTMKAC 1 cut(s) 252
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.