Rroxscaffold_6G00406300
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016609
Physical Location & Seq
Forward (+)
28794984 .. 28797201
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406300.1

Sequence Viewer

Length: 903 bp
ATGGGGAGGTGCACAAGGCCGAGGCGAAGCTACTCCAAAAATTTCATGTCAAGTGGTGCCGGAGGAGGAAGAAACGGTGGAAAGAAGGAGGAGGCGAGTTTCGGTCGAAACGGGCGGTGCGGCTCGGCCCTCTACCTCGACTCCATCGGCCTCGACCTCTTCTCCCTCCTCCACCACCACCCTCCCATCGTCTCCGCCTCCCTCCCCGACCTCAAATCCACCGTCCATTTCCTCACCTCCATGGGCTTCTCCACCCCCGAGTTCCGCCGCCTCGTCGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTTTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAAAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTCTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGAGAAGGGTGTGTGCTTTCCTTTGCCCATTTTGTTAAAGACCAGTGAGGCCAAGTTCCGGGATAGATTGGAGGTTTGTTGTAATTCTTCTATCCCATTGAGAAATTCTCCTCTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

300

Amino Acids

34.3

Weight (kDa)

9.75

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 53 - 116 4.5e-06 mTERF
mTERF PF02536 114 - 269 9.8e-34 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 531
AccII CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
AcoI YGGCCR 2 cut(s) 573, 728
AcsI RAATTY 3 cut(s) 40, 853, 874
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 1 cut(s) 871
AfiI CCNNNNNNNGG 3 cut(s) 346, 582, 807
AgsI TTSAA 2 cut(s) 640, 673
AluBI AGCT 5 cut(s) 30, 517, 598, 679, 711
AluI AGCT 5 cut(s) 30, 517, 598, 679, 711
Alw21I GWGCWC 2 cut(s) 14, 681
Alw26I GTCTC 2 cut(s) 196, 313
Alw44I GTGCAC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 7 cut(s) 17, 126, 148, 348, 573, 728, 798
ApaLI GTGCAC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 501, 595
ApoI RAATTY 3 cut(s) 40, 853, 874
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 127, 349
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 3 cut(s) 226, 322, 899
AvaI CYCGRG 1 cut(s) 257
BaeGI GKGCMC 2 cut(s) 14, 287
BalI TGGCCA 1 cut(s) 575
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 633, 681
Bbv12I GWGCWC 2 cut(s) 14, 681
BbvI GCAGC 2 cut(s) 513, 607
BccI CCATC 4 cut(s) 152, 194, 332, 464
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 1 cut(s) 809
BcoDI GTCTC 2 cut(s) 196, 313
BfmI CTRYAG 2 cut(s) 499, 607
BglI GCCNNNNNGGC 1 cut(s) 276
BisI GCNGC 5 cut(s) 121, 268, 502, 560, 596
BlsI GCNGC 5 cut(s) 122, 269, 503, 561, 597
Bme1390I CCNGG 1 cut(s) 809
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 127, 349
BmiI GGNNCC 3 cut(s) 58, 364, 590
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 1 cut(s) 745
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpmI CTGGAG 3 cut(s) 394, 434, 503
BpuEI CTTGAG 2 cut(s) 356, 665
BpuMI CCSGG 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 20, 240, 731
BsaXI ACNNNNNCTCC 4 cut(s) 125, 146, 155, 176
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 582, 807
Bse1I ACTGG 2 cut(s) 451, 792
BseDI CCNNGG 3 cut(s) 20, 240, 731
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 346, 582, 807
BseNI ACTGG 2 cut(s) 451, 792
BseRI GAGGAG 5 cut(s) 78, 104, 158, 329, 849
BseSI GKGCMC 2 cut(s) 14, 287
BseX3I CGGCCG 1 cut(s) 728
BseXI GCAGC 2 cut(s) 513, 607
Bsh1236I CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
Bsh1285I CGRYCG 2 cut(s) 106, 731
BshFI GGCC 7 cut(s) 19, 128, 150, 350, 575, 730, 800
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 2 cut(s) 106, 731
BsiHKAI GWGCWC 2 cut(s) 14, 681
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 60, 583, 808
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 3 cut(s) 346, 582, 807
BsmAI GTCTC 2 cut(s) 196, 313
BsmBI CGTCTC 2 cut(s) 196, 313
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 7 cut(s) 19, 128, 150, 350, 575, 730, 800
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 4 cut(s) 14, 287, 633, 681
Bsp1407I TGTACA 1 cut(s) 869
Bsp143I GATC 1 cut(s) 367
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 7 cut(s) 19, 128, 150, 350, 575, 730, 800
BspFNI CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
BspLI GGNNCC 3 cut(s) 58, 364, 590
BspMAI CTGCAG 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 869
BsrI ACTGG 2 cut(s) 451, 792
BssECI CCNNGG 3 cut(s) 20, 240, 731
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 77, 223
Bst6I CTCTTC 2 cut(s) 164, 605
BstACI GRCGYC 1 cut(s) 471
BstAUI TGTACA 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 352, 405
BstDEI CTNAG 1 cut(s) 712
BstDSI CCRYGG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 2 cut(s) 196, 313
BstMBI GATC 1 cut(s) 367
BstMCI CGRYCG 2 cut(s) 106, 731
BstMWI GCNNNNNNNGC 4 cut(s) 276, 351, 360, 592
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 807
BstSFI CTRYAG 2 cut(s) 499, 607
BstSLI GKGCMC 2 cut(s) 14, 287
BstUI CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
BstV1I GCAGC 2 cut(s) 513, 607
BstZI CGGCCG 1 cut(s) 728
BsuRI GGCC 7 cut(s) 19, 128, 150, 350, 575, 730, 800
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 352, 405
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 127, 349
CseI GACGC 7 cut(s) 295, 343, 367, 403, 493, 517, 575
Csp6I GTAC 1 cut(s) 870
CviAII CATG 4 cut(s) 46, 241, 280, 577
CviQI GTAC 1 cut(s) 870
DdeI CTNAG 1 cut(s) 712
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 2 cut(s) 573, 728
EagI CGGCCG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 164, 605
EarI CTCTTC 2 cut(s) 164, 605
EciI GGCGGA 3 cut(s) 184, 254, 419
Ecl136II GAGCTC 1 cut(s) 679
EclXI CGGCCG 1 cut(s) 728
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 2 cut(s) 633, 681
Eco52I CGGCCG 1 cut(s) 728
Eco53kI GAGCTC 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 679
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 2 cut(s) 633, 681
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 196, 313
FaeI CATG 4 cut(s) 49, 244, 283, 580
FaiI YATR 7 cut(s) 47, 242, 281, 383, 464, 578, 621
FaqI GGGAC 1 cut(s) 578
FatI CATG 4 cut(s) 45, 240, 279, 576
FauI CCCGC 5 cut(s) 311, 359, 533, 555, 600
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 5 cut(s) 121, 268, 502, 560, 596
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 633, 681
Fsp4HI GCNGC 5 cut(s) 121, 268, 502, 560, 596
GlaI GCGC 1 cut(s) 377
GluI GCNGC 5 cut(s) 121, 268, 502, 560, 596
GsuI CTGGAG 3 cut(s) 394, 434, 503
HaeIII GGCC 7 cut(s) 19, 128, 150, 350, 575, 730, 800
HapII CCGG 3 cut(s) 60, 583, 808
HgaI GACGC 7 cut(s) 295, 343, 367, 403, 493, 517, 575
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 4 cut(s) 49, 244, 283, 580
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 3 cut(s) 358, 475, 532
HindII GTYRAC 3 cut(s) 358, 475, 532
HinfI GANTC 3 cut(s) 140, 718, 724
HpaII CCGG 3 cut(s) 60, 583, 808
HphI GGTGA 3 cut(s) 226, 322, 899
Hpy166II GTNNAC 5 cut(s) 12, 358, 475, 532, 870
Hpy188I TCNGA 4 cut(s) 313, 367, 723, 741
Hpy8I GTNNAC 5 cut(s) 12, 358, 475, 532, 870
Hpy99I CGWCG 5 cut(s) 278, 393, 473, 509, 533
HpyAV CCTTC 4 cut(s) 79, 343, 667, 748
HpyCH4III ACNGT 2 cut(s) 77, 223
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 12, 501
HpyF10VI GCNNNNNNNGC 4 cut(s) 276, 351, 360, 592
HpyF3I CTNAG 1 cut(s) 712
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 4 cut(s) 49, 244, 283, 580
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 605
LmnI GCTCC 3 cut(s) 368, 522, 676
Lsp1109I GCAGC 2 cut(s) 513, 607
LweI GCATC 1 cut(s) 745
MaeII ACGT 1 cut(s) 471
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 5 cut(s) 81, 151, 319, 592, 828
MhlI GDGCHC 4 cut(s) 14, 287, 633, 681
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 6 cut(s) 40, 622, 640, 832, 853, 874
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 575
MscI TGGCCA 1 cut(s) 575
MseI TTAA 1 cut(s) 785
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 3 cut(s) 60, 583, 808
MspR9I CCNGG 1 cut(s) 809
MvnI CGCG 6 cut(s) 306, 345, 354, 378, 528, 559
MwoI GCNNNNNNNGC 4 cut(s) 276, 351, 360, 592
NciI CCSGG 1 cut(s) 809
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 367
NlaIII CATG 4 cut(s) 49, 244, 283, 580
NlaIV GGNNCC 3 cut(s) 58, 364, 590
NmeAIII GCCGAG 3 cut(s) 45, 104, 756
NspI RCATGY 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 4 cut(s) 303, 411, 465, 537
PfeI GAWTC 2 cut(s) 718, 724
PfoI TCCNGGA 1 cut(s) 807
PkrI GCNGC 5 cut(s) 122, 269, 503, 561, 597
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 681
PspN4I GGNNCC 3 cut(s) 58, 364, 590
PspPI GGNCC 2 cut(s) 127, 349
PstI CTGCAG 1 cut(s) 503
RsaI GTAC 1 cut(s) 871
RsaNI GTAC 1 cut(s) 870
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 681
SalI GTCGAC 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 605
SaqAI TTAA 1 cut(s) 785
SatI GCNGC 5 cut(s) 121, 268, 502, 560, 596
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 2 cut(s) 127, 349
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 4 cut(s) 14, 287, 633, 681
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 2 cut(s) 499, 607
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 371, 680
SmoI CTYRAG 2 cut(s) 371, 680
Sse9I AATT 6 cut(s) 40, 622, 640, 832, 853, 874
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 807
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 77, 223
TaiI ACGT 1 cut(s) 474
TaqI TCGA 7 cut(s) 106, 138, 153, 507, 531, 540, 627
TaqII GACCGA 1 cut(s) 92
TasI AATT 6 cut(s) 40, 622, 640, 832, 853, 874
TatI WGTACW 1 cut(s) 869
TauI GCSGC 3 cut(s) 123, 270, 562
TfiI GAWTC 2 cut(s) 718, 724
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 1 cut(s) 799
TseI GCWGC 2 cut(s) 501, 595
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 1 cut(s) 799
VneI GTGCAC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 3 cut(s) 40, 853, 874
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 531
ZraI GACGTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.