RLG00000023843
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016609
Physical Location & Seq
Forward (+)
29097754 .. 29099123
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023843

Sequence Viewer

Length: 1092 bp
ATGACCAGCACGGCAGCACCCACACCAGTACCAACAACCAACCCAATGCAAGAAACCCACTTCCTCTCCACCTCAAACCCCAAACCCTTCTCCTCCATTCCCCTCCCCAACCCAAACCCAAATCCCAAATCCCAATTCCAATCCTCCTCCTCCTCCCACCATGACCCTTCTTTCCACTCCCCCAAAACCCCTCACTTCCCCATCCTCTCCTCCAAAACCAAAACCAAAACCCCATCATCATCATCATCATCCCCCCAAATCCTCAAATCCCTCAAACCCCAAATCCCCCCTCCCCCCTCCGACTTCCACGACAAAGCCCTCTACCTCGACTCCATCGGCCTCGACCTCTTCTCCCTCCTCCACCACCACCCTCCCATCGTCTCCGCCTCCCTCCCCGACCTCAAATCCACCGTCCATTTCCTCACCTCCATGGGCTTCTCCACCCCCGAGTTCCGCCGCCTCGTCGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTCTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAGAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGAGAAGGGTGTGTGCTTTCCTTTGCCGATTTTGTTAAAGACCAGTGAGGCCAAGTTCCGGGAGAGATTGGAGGTTTGTTGTAATTCTTCTATCCCGTTGAGAAATTCTCCTCTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

364

Amino Acids

41.19

Weight (kDa)

9.57

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 115 - 179 4.1e-06 mTERF
mTERF PF02536 177 - 332 1.5e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 663
AccI GTMKAC 1 cut(s) 720
AccII CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
AcoI YGGCCR 2 cut(s) 762, 917
AcsI RAATTY 2 cut(s) 1042, 1063
AcyI GRCGYC 1 cut(s) 660
AfaI GTAC 2 cut(s) 30, 1060
AfiI CCNNNNNNNGG 3 cut(s) 535, 771, 996
AgsI TTSAA 2 cut(s) 829, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 706, 787, 868, 900
AluI AGCT 4 cut(s) 706, 787, 868, 900
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 2 cut(s) 385, 502
Ama87I CYCGRG 2 cut(s) 446, 728
AoxI GGCC 5 cut(s) 337, 537, 762, 917, 987
ApeKI GCWGC 3 cut(s) 14, 690, 784
ApoI RAATTY 2 cut(s) 1042, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 3 cut(s) 415, 511, 1088
AvaI CYCGRG 2 cut(s) 446, 728
BaeGI GKGCMC 1 cut(s) 476
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BalI TGGCCA 1 cut(s) 764
BanII GRGCYC 2 cut(s) 822, 870
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 26, 702, 796
BccI CCATC 6 cut(s) 209, 241, 341, 383, 521, 653
BceAI ACGGC 2 cut(s) 27, 565
BcnI CCSGG 1 cut(s) 998
BcoDI GTCTC 2 cut(s) 385, 502
BfmI CTRYAG 2 cut(s) 688, 796
BglI GCCNNNNNGGC 1 cut(s) 465
BisI GCNGC 5 cut(s) 15, 457, 691, 749, 785
BlsI GCNGC 5 cut(s) 16, 458, 692, 750, 786
Bme1390I CCNGG 1 cut(s) 998
BmeT110I CYCGRG 2 cut(s) 446, 728
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 2 cut(s) 553, 779
BmrFI CCNGG 1 cut(s) 998
BmsI GCATC 1 cut(s) 934
BplI GAGNNNNNCTC 2 cut(s) 1030, 1062
BpmI CTGGAG 3 cut(s) 583, 623, 692
BpuEI CTTGAG 2 cut(s) 545, 854
BpuMI CCSGG 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 429, 920
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 314, 335, 344, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 771, 996
Bse1I ACTGG 3 cut(s) 26, 640, 981
BseDI CCNNGG 2 cut(s) 429, 920
BseGI GGATG 3 cut(s) 201, 248, 507
BseLI CCNNNNNNNGG 3 cut(s) 535, 771, 996
BseNI ACTGG 3 cut(s) 26, 640, 981
BseRI GAGGAG 8 cut(s) 82, 136, 139, 142, 199, 347, 518, 1038
BseSI GKGCMC 1 cut(s) 476
BseX3I CGGCCG 1 cut(s) 917
BseXI GCAGC 3 cut(s) 26, 702, 796
Bsh1236I CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
Bsh1285I CGRYCG 1 cut(s) 920
BshFI GGCC 5 cut(s) 339, 539, 764, 919, 989
BsiEI CGRYCG 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 870
BsiHKCI CYCGRG 2 cut(s) 446, 728
BsiSI CCGG 2 cut(s) 772, 997
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 3 cut(s) 535, 771, 996
BsmAI GTCTC 2 cut(s) 385, 502
BsmBI CGTCTC 2 cut(s) 385, 502
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 5 cut(s) 339, 539, 764, 919, 989
BsoBI CYCGRG 2 cut(s) 446, 728
Bsp1286I GDGCHC 3 cut(s) 476, 822, 870
Bsp1407I TGTACA 1 cut(s) 1058
Bsp143I GATC 1 cut(s) 556
Bsp19I CCATGG 1 cut(s) 429
BspANI GGCC 5 cut(s) 339, 539, 764, 919, 989
BspFNI CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
BspLI GGNNCC 2 cut(s) 553, 779
BspMAI CTGCAG 1 cut(s) 692
BsrGI TGTACA 1 cut(s) 1058
BsrI ACTGG 3 cut(s) 26, 640, 981
BssECI CCNNGG 2 cut(s) 429, 920
BssMI GATC 1 cut(s) 556
BssNI GRCGYC 1 cut(s) 660
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 1058
BstC8I GCNNGC 2 cut(s) 541, 594
BstDEI CTNAG 1 cut(s) 901
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 201, 248, 507
BstFNI CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 2 cut(s) 385, 502
BstMBI GATC 1 cut(s) 556
BstMCI CGRYCG 1 cut(s) 920
BstMWI GCNNNNNNNGC 4 cut(s) 465, 540, 549, 781
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 996
BstSFI CTRYAG 2 cut(s) 688, 796
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
BstV1I GCAGC 3 cut(s) 26, 702, 796
BstZI CGGCCG 1 cut(s) 917
BsuRI GGCC 5 cut(s) 339, 539, 764, 919, 989
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 3 cut(s) 201, 248, 507
BtsIMutI CAGTG 1 cut(s) 988
Cac8I GCNNGC 2 cut(s) 541, 594
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 7 cut(s) 484, 532, 556, 592, 682, 706, 764
Csp6I GTAC 2 cut(s) 29, 1059
CviAII CATG 4 cut(s) 161, 430, 469, 766
CviQI GTAC 2 cut(s) 29, 1059
DdeI CTNAG 1 cut(s) 901
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
EaeI YGGCCR 2 cut(s) 762, 917
EagI CGGCCG 1 cut(s) 917
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 3 cut(s) 373, 443, 608
Ecl136II GAGCTC 1 cut(s) 868
EclXI CGGCCG 1 cut(s) 917
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 822, 870
Eco52I CGGCCG 1 cut(s) 917
Eco53kI GAGCTC 1 cut(s) 868
Eco88I CYCGRG 2 cut(s) 446, 728
EcoICRI GAGCTC 1 cut(s) 868
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 822, 870
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 2 cut(s) 385, 502
FaeI CATG 4 cut(s) 164, 433, 472, 769
FaiI YATR 7 cut(s) 162, 431, 470, 572, 653, 767, 810
FaqI GGGAC 1 cut(s) 767
FatI CATG 4 cut(s) 160, 429, 468, 765
FauI CCCGC 5 cut(s) 500, 548, 722, 744, 789
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 15, 457, 691, 749, 785
FokI GGATG 3 cut(s) 188, 235, 494
FriOI GRGCYC 2 cut(s) 822, 870
Fsp4HI GCNGC 5 cut(s) 15, 457, 691, 749, 785
GlaI GCGC 1 cut(s) 566
GluI GCNGC 5 cut(s) 15, 457, 691, 749, 785
GsuI CTGGAG 3 cut(s) 583, 623, 692
HaeIII GGCC 5 cut(s) 339, 539, 764, 919, 989
HapII CCGG 2 cut(s) 772, 997
HgaI GACGC 7 cut(s) 484, 532, 556, 592, 682, 706, 764
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 1 cut(s) 660
Hin1II CATG 4 cut(s) 164, 433, 472, 769
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 3 cut(s) 547, 664, 721
HindII GTYRAC 3 cut(s) 547, 664, 721
HinfI GANTC 3 cut(s) 329, 907, 913
HpaII CCGG 2 cut(s) 772, 997
HphI GGTGA 3 cut(s) 415, 511, 1088
Hpy166II GTNNAC 4 cut(s) 547, 664, 721, 1059
Hpy188I TCNGA 5 cut(s) 301, 502, 556, 912, 930
Hpy188III TCNNGA 1 cut(s) 730
Hpy8I GTNNAC 4 cut(s) 547, 664, 721, 1059
Hpy99I CGWCG 5 cut(s) 467, 582, 662, 698, 722
HpyAV CCTTC 5 cut(s) 97, 177, 532, 856, 937
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 2 cut(s) 49, 690
HpyF10VI GCNNNNNNNGC 4 cut(s) 465, 540, 549, 781
HpyF3I CTNAG 1 cut(s) 901
HpySE526I ACGT 1 cut(s) 660
Hsp92I GRCGYC 1 cut(s) 660
Hsp92II CATG 4 cut(s) 164, 433, 472, 769
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 3 cut(s) 557, 711, 865
Lsp1109I GCAGC 3 cut(s) 26, 702, 796
LweI GCATC 1 cut(s) 934
MaeII ACGT 1 cut(s) 660
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 3 cut(s) 340, 508, 1017
MhlI GDGCHC 3 cut(s) 476, 822, 870
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 6 cut(s) 134, 811, 829, 1021, 1042, 1063
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 324, 525
Mox20I TGGCCA 1 cut(s) 764
MscI TGGCCA 1 cut(s) 764
MseI TTAA 1 cut(s) 974
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 787
MspI CCGG 2 cut(s) 772, 997
MspR9I CCNGG 1 cut(s) 998
MvnI CGCG 6 cut(s) 495, 534, 543, 567, 717, 748
MwoI GCNNNNNNNGC 4 cut(s) 465, 540, 549, 781
NciI CCSGG 1 cut(s) 998
NcoI CCATGG 1 cut(s) 429
NdeII GATC 1 cut(s) 556
NlaIII CATG 4 cut(s) 164, 433, 472, 769
NlaIV GGNNCC 2 cut(s) 553, 779
NmeAIII GCCGAG 1 cut(s) 945
NspI RCATGY 1 cut(s) 472
PaeR7I CTCGAG 1 cut(s) 728
PcsI WCGNNNNNNNCGW 4 cut(s) 492, 600, 654, 726
PfeI GAWTC 2 cut(s) 907, 913
PfoI TCCNGGA 1 cut(s) 996
PkrI GCNGC 5 cut(s) 16, 458, 692, 750, 786
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 870
PspN4I GGNNCC 2 cut(s) 553, 779
PspPI GGNCC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 787
RsaI GTAC 2 cut(s) 30, 1060
RsaNI GTAC 2 cut(s) 29, 1059
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 870
SalI GTCGAC 1 cut(s) 719
SaqAI TTAA 1 cut(s) 974
SatI GCNGC 5 cut(s) 15, 457, 691, 749, 785
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 998
SduI GDGCHC 3 cut(s) 476, 822, 870
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 2 cut(s) 688, 796
Sfr274I CTCGAG 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 3 cut(s) 560, 728, 869
SmoI CTYRAG 3 cut(s) 560, 728, 869
Sse9I AATT 6 cut(s) 134, 811, 829, 1021, 1042, 1063
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 996
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 663
TaqI TCGA 6 cut(s) 327, 342, 696, 720, 729, 816
TasI AATT 6 cut(s) 134, 811, 829, 1021, 1042, 1063
TatI WGTACW 1 cut(s) 1058
TauI GCSGC 2 cut(s) 459, 751
TfiI GAWTC 2 cut(s) 907, 913
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 1 cut(s) 988
TseI GCWGC 3 cut(s) 14, 690, 784
TspRI CASTG 1 cut(s) 988
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 2 cut(s) 1042, 1063
XceI RCATGY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 720
ZraI GACGTC 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.