Rw3G018060
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016609
Physical Location & Seq
Reverse (-)
19913929 .. 19915419
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018060.1

Sequence Viewer

Length: 1041 bp
ATGCAAGAAACCCACTTCCTCTCCACCTCAAACCCCAATCCCTTCTCCTCCATTCCCCTCCCCAACCCAAACCCAAATCCCAAATCCCAATTCCAATCCTCCTCCTCCTCCTCCCACCATGACCCTTCTTTCCACTCCCACAAAACCCCTCACTTCCCCATCCTCTCCACCAAAACCAGAACCAAAACCCCATCATCATCCCCCCAAATCCTCAAATCCCTCAAACCCCAAATCCCCCCTCCCCCCTCCGACTTCCACGACAAGGCCCTCTACCTCGACTCCATCGGCCTCGACCTCTTCTCCCTCCTCCACCACCACCCTCCCATCGCCTCCGCCTCCCTCCCCGACCTCAAATCCACCGTCCATTTCCTCACCTCCATGGGCTTTTCCACCCCCGAGTTCCGCCGCCTCGTCGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTCTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCATCCCCGCGTCGACTACCTCGAAAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGACAAGGGTGTGTGCTTTCCTTTGCCTATTTTGTTAAAGACCAGTGAGGCCAGGTTCCGGGATAGATTGGAGGTTTGTTGTAATTCTTCTATCCCGTTGAGAAATTCTCCTTTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

346

Amino Acids

39.6

Weight (kDa)

9.56

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 160 - 315 2.7e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 669
AccII CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
AcoI YGGCCR 2 cut(s) 711, 866
AcsI RAATTY 2 cut(s) 991, 1012
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 1 cut(s) 1009
AfiI CCNNNNNNNGG 4 cut(s) 262, 484, 720, 945
AgsI TTSAA 2 cut(s) 778, 811
AjnI CCWGG 1 cut(s) 938
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 4 cut(s) 655, 736, 817, 849
AluI AGCT 4 cut(s) 655, 736, 817, 849
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 6 cut(s) 264, 286, 486, 711, 866, 936
ApeKI GCWGC 2 cut(s) 639, 733
ApoI RAATTY 2 cut(s) 991, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 2 cut(s) 265, 487
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 3 cut(s) 364, 460, 1037
AvaI CYCGRG 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 713
BanII GRGCYC 2 cut(s) 771, 819
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 651, 745
BccI CCATC 7 cut(s) 167, 199, 290, 332, 470, 602, 666
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 1 cut(s) 940
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 1 cut(s) 451
BfmI CTRYAG 2 cut(s) 637, 745
BglI GCCNNNNNGGC 1 cut(s) 414
BisI GCNGC 4 cut(s) 406, 640, 698, 734
BlsI GCNGC 4 cut(s) 407, 641, 699, 735
Bme1390I CCNGG 2 cut(s) 940, 947
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 265, 487
BmiI GGNNCC 3 cut(s) 502, 728, 944
BmrFI CCNGG 2 cut(s) 940, 947
BmsI GCATC 1 cut(s) 883
BplI GAGNNNNNCTC 2 cut(s) 979, 1011
BpmI CTGGAG 2 cut(s) 532, 572
BpuEI CTTGAG 2 cut(s) 494, 803
BpuMI CCSGG 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 378, 869
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 263, 284, 293, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 484, 720, 945
Bse1I ACTGG 2 cut(s) 589, 930
BseBI CCWGG 1 cut(s) 940
BseDI CCNNGG 2 cut(s) 378, 869
BseGI GGATG 4 cut(s) 159, 197, 456, 658
BseLI CCNNNNNNNGG 4 cut(s) 262, 484, 720, 945
BseNI ACTGG 2 cut(s) 589, 930
BseRI GAGGAG 7 cut(s) 37, 91, 94, 97, 100, 296, 467
BseSI GKGCMC 1 cut(s) 425
BseX3I CGGCCG 1 cut(s) 866
BseXI GCAGC 2 cut(s) 651, 745
Bsh1236I CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
Bsh1285I CGRYCG 1 cut(s) 869
BshFI GGCC 6 cut(s) 266, 288, 488, 713, 868, 938
BsiEI CGRYCG 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 721, 946
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 4 cut(s) 262, 484, 720, 945
BsmAI GTCTC 1 cut(s) 451
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 6 cut(s) 266, 288, 488, 713, 868, 938
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 3 cut(s) 425, 771, 819
Bsp1407I TGTACA 1 cut(s) 1007
Bsp143I GATC 1 cut(s) 505
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 6 cut(s) 266, 288, 488, 713, 868, 938
BspFNI CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
BspLI GGNNCC 3 cut(s) 502, 728, 944
BspMAI CTGCAG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 1007
BsrI ACTGG 2 cut(s) 589, 930
BssECI CCNNGG 2 cut(s) 378, 869
BssMI GATC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 940
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 490, 543
BstDEI CTNAG 1 cut(s) 850
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 4 cut(s) 159, 197, 456, 658
BstFNI CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 1 cut(s) 505
BstMCI CGRYCG 1 cut(s) 869
BstMWI GCNNNNNNNGC 4 cut(s) 414, 489, 498, 730
BstNI CCWGG 1 cut(s) 940
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 938, 945
BstSFI CTRYAG 2 cut(s) 637, 745
BstSLI GKGCMC 1 cut(s) 425
BstUI CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
BstV1I GCAGC 2 cut(s) 651, 745
BstZI CGGCCG 1 cut(s) 866
BsuRI GGCC 6 cut(s) 266, 288, 488, 713, 868, 938
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 159, 197, 456, 658
BtsIMutI CAGTG 1 cut(s) 937
Cac8I GCNNGC 2 cut(s) 490, 543
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 265, 487
CseI GACGC 7 cut(s) 433, 481, 505, 541, 631, 655, 713
Csp6I GTAC 1 cut(s) 1008
CviAII CATG 4 cut(s) 119, 379, 418, 715
CviQI GTAC 1 cut(s) 1008
DdeI CTNAG 1 cut(s) 850
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 711, 866
EagI CGGCCG 1 cut(s) 866
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 3 cut(s) 322, 392, 557
Ecl136II GAGCTC 1 cut(s) 817
EclXI CGGCCG 1 cut(s) 866
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 771, 819
Eco52I CGGCCG 1 cut(s) 866
Eco53kI GAGCTC 1 cut(s) 817
Eco88I CYCGRG 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 817
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 938
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 771, 819
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 4 cut(s) 122, 382, 421, 718
FaiI YATR 7 cut(s) 120, 380, 419, 521, 602, 716, 759
FaqI GGGAC 1 cut(s) 716
FatI CATG 4 cut(s) 118, 378, 417, 714
FauI CCCGC 5 cut(s) 449, 497, 671, 693, 738
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 4 cut(s) 406, 640, 698, 734
FokI GGATG 4 cut(s) 146, 184, 443, 645
FriOI GRGCYC 2 cut(s) 771, 819
Fsp4HI GCNGC 4 cut(s) 406, 640, 698, 734
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 406, 640, 698, 734
GsuI CTGGAG 2 cut(s) 532, 572
HaeIII GGCC 6 cut(s) 266, 288, 488, 713, 868, 938
HapII CCGG 2 cut(s) 721, 946
HgaI GACGC 7 cut(s) 433, 481, 505, 541, 631, 655, 713
HhaI GCGC 1 cut(s) 516
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 4 cut(s) 122, 382, 421, 718
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 3 cut(s) 496, 613, 670
HindII GTYRAC 3 cut(s) 496, 613, 670
HinfI GANTC 3 cut(s) 278, 856, 862
HpaII CCGG 2 cut(s) 721, 946
HphI GGTGA 3 cut(s) 364, 460, 1037
Hpy166II GTNNAC 5 cut(s) 496, 613, 670, 889, 1008
Hpy188I TCNGA 5 cut(s) 250, 451, 505, 861, 879
Hpy8I GTNNAC 5 cut(s) 496, 613, 670, 889, 1008
Hpy99I CGWCG 5 cut(s) 416, 531, 611, 647, 671
HpyAV CCTTC 4 cut(s) 52, 135, 481, 805
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 4, 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 414, 489, 498, 730
HpyF3I CTNAG 1 cut(s) 850
HpySE526I ACGT 1 cut(s) 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 4 cut(s) 122, 382, 421, 718
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 3 cut(s) 506, 660, 814
Lsp1109I GCAGC 2 cut(s) 651, 745
LweI GCATC 1 cut(s) 883
MaeII ACGT 1 cut(s) 609
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 3 cut(s) 289, 457, 966
MhlI GDGCHC 3 cut(s) 425, 771, 819
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 6 cut(s) 89, 760, 778, 970, 991, 1012
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 273, 474
Mox20I TGGCCA 1 cut(s) 713
MscI TGGCCA 1 cut(s) 713
MseI TTAA 1 cut(s) 923
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 736
MspI CCGG 2 cut(s) 721, 946
MspR9I CCNGG 2 cut(s) 940, 947
MvaI CCWGG 1 cut(s) 940
MvnI CGCG 6 cut(s) 444, 483, 492, 516, 666, 697
MwoI GCNNNNNNNGC 4 cut(s) 414, 489, 498, 730
NciI CCSGG 1 cut(s) 947
NcoI CCATGG 1 cut(s) 378
NdeII GATC 1 cut(s) 505
NlaIII CATG 4 cut(s) 122, 382, 421, 718
NlaIV GGNNCC 3 cut(s) 502, 728, 944
NmeAIII GCCGAG 1 cut(s) 894
NspI RCATGY 1 cut(s) 421
PcsI WCGNNNNNNNCGW 4 cut(s) 441, 549, 603, 675
PfeI GAWTC 2 cut(s) 856, 862
PfoI TCCNGGA 1 cut(s) 945
PkrI GCNGC 4 cut(s) 407, 641, 699, 735
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 938
PspGI CCWGG 1 cut(s) 938
PspN4I GGNNCC 3 cut(s) 502, 728, 944
PspPI GGNCC 2 cut(s) 265, 487
PstI CTGCAG 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 1 cut(s) 1009
RsaNI GTAC 1 cut(s) 1008
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 819
SalI GTCGAC 1 cut(s) 668
SaqAI TTAA 1 cut(s) 923
SatI GCNGC 4 cut(s) 406, 640, 698, 734
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 2 cut(s) 265, 487
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 940, 947
SduI GDGCHC 3 cut(s) 425, 771, 819
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 2 cut(s) 637, 745
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 509, 818
SmoI CTYRAG 2 cut(s) 509, 818
Sse9I AATT 6 cut(s) 89, 760, 778, 970, 991, 1012
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 2 cut(s) 938, 945
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 612
TaqI TCGA 6 cut(s) 276, 291, 645, 669, 678, 765
TasI AATT 6 cut(s) 89, 760, 778, 970, 991, 1012
TatI WGTACW 1 cut(s) 1007
TauI GCSGC 2 cut(s) 408, 700
TfiI GAWTC 2 cut(s) 856, 862
Tru1I TTAA 1 cut(s) 923
Tru9I TTAA 1 cut(s) 923
TscAI CASTG 1 cut(s) 937
TseI GCWGC 2 cut(s) 639, 733
TspRI CASTG 1 cut(s) 937
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 2 cut(s) 991, 1012
XceI RCATGY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 669
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.