FvH4_6g19990
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016609
Physical Location & Seq
Reverse (-)
13431062 .. 13432099
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19990.t1

Sequence Viewer

Length: 1038 bp
ATGCAAGAAACCCACTTCCTCTCCACCTCAAACCCCAAACCCTTCTCCTCCAATCTCATCCCCCTTCCCAACCCAAACCCAAATCCCAAATCCCAATTCCAATCCTCCTCCTCCTCCCACCATGACCCTTCTTTCCACTCCCCCAAAACCCCTCACTTCCCCTCCCTCTCCACCAAGACCAAAACCAAAACCAAAACCCCTTCCCCTATCAAACCCCAAATCCCACCTCCCCCTTCCGACTTCCACGACAAGGCCCTCTACCTCGACTCCATCGGCCTCGACCTCTTCTCCCTCCTCCACCACCACCCTCCGATCCTCTCCGCCTCCCTCGCCGACCTCAAATCCACCGTCCATTTCCTCTCCTCCATGGGCTTCTCCACCCTCGAGCTCCGCCGCCTCGTTGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATCAACCGACGCCCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTCTACTTCCTCCAGTCCATCGGCATAGCTGACGTCAACAAACACACATCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAGAAAATCGGGTTTTCACGCCGCGACGCGTTGGCCATGTTCCGGCGGTTCCCGCAGCTCTTCTGCTACAGCATTGAGCAGAACTTCGAGCCCAAGTTCAATTACTTTGTTGTCGAAATGGGGAGGGAGCTGAAGGAGCTGAAAGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCACCAGAGGTGTGTGGACAAGGGTGTGTGCTTCCCGTTGCCGATTTTGTTAAAGACAAGTGAGGCCAAGTTCCGGGAGAGATTGGAGGTTTGTTGTAATTCTTCTATCCCATTGAGAAATTCTCCTTTGTGGTGTACAAAATCCATTTCTGATGATTTAGACAATGAAAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

346

Amino Acids

39.52

Weight (kDa)

9.49

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 94 - 158 9.3e-06 mTERF
mTERF PF02536 156 - 311 3e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 861
AccI GTMKAC 1 cut(s) 657
AccII CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 2 cut(s) 699, 854
AcsI RAATTY 1 cut(s) 979
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 2 cut(s) 517, 597
AfaI GTAC 1 cut(s) 997
AfiI CCNNNNNNNGG 4 cut(s) 250, 472, 708, 933
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 1 cut(s) 766
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 7 cut(s) 388, 593, 643, 724, 796, 805, 837
AluI AGCT 7 cut(s) 388, 593, 643, 724, 796, 805, 837
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 1 cut(s) 307
Ama87I CYCGRG 2 cut(s) 383, 665
AoxI GGCC 6 cut(s) 252, 274, 474, 699, 854, 924
ApeKI GCWGC 2 cut(s) 627, 721
ApoI RAATTY 1 cut(s) 979
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 253, 475
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 1 cut(s) 448
AvaI CYCGRG 2 cut(s) 383, 665
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 701
BanI GGYRCC 1 cut(s) 861
BanII GRGCYC 2 cut(s) 390, 759
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 639, 733
BccI CCATC 3 cut(s) 278, 458, 590
BceAI ACGGC 1 cut(s) 502
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 1 cut(s) 439
BfmI CTRYAG 2 cut(s) 625, 733
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 4 cut(s) 394, 628, 688, 722
BlsI GCNGC 4 cut(s) 395, 629, 689, 723
Bme1390I CCNGG 1 cut(s) 935
BmeT110I CYCGRG 2 cut(s) 383, 665
BmgT120I GGNCC 2 cut(s) 253, 475
BmiI GGNNCC 3 cut(s) 490, 716, 863
BmrFI CCNGG 1 cut(s) 935
BplI GAGNNNNNCTC 2 cut(s) 967, 999
BpmI CTGGAG 3 cut(s) 520, 560, 629
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 1 cut(s) 935
BsaHI GRCGYC 2 cut(s) 517, 597
BsaJI CCNNGG 2 cut(s) 366, 857
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 146, 176, 251, 272, 281, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 472, 708, 933
Bse1I ACTGG 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 366, 857
BseGI GGATG 2 cut(s) 57, 444
BseLI CCNNNNNNNGG 4 cut(s) 250, 472, 708, 933
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 7 cut(s) 37, 97, 100, 103, 284, 352, 455
BseSI GKGCMC 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 854
BseXI GCAGC 2 cut(s) 639, 733
Bsh1236I CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
Bsh1285I CGRYCG 1 cut(s) 857
BshFI GGCC 6 cut(s) 254, 276, 476, 701, 856, 926
BshNI GGYRCC 1 cut(s) 861
BsiEI CGRYCG 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 2 cut(s) 383, 665
BsiSI CCGG 2 cut(s) 709, 934
BslI CCNNNNNNNGG 4 cut(s) 250, 472, 708, 933
BsmAI GTCTC 1 cut(s) 439
BsmBI CGTCTC 1 cut(s) 439
BsnI GGCC 6 cut(s) 254, 276, 476, 701, 856, 926
BsoBI CYCGRG 2 cut(s) 383, 665
Bsp1286I GDGCHC 3 cut(s) 390, 413, 759
Bsp1407I TGTACA 1 cut(s) 995
Bsp143I GATC 2 cut(s) 312, 493
Bsp19I CCATGG 1 cut(s) 366
BspANI GGCC 6 cut(s) 254, 276, 476, 701, 856, 926
BspFNI CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
BspLI GGNNCC 3 cut(s) 490, 716, 863
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 1 cut(s) 307
BspQI GCTCTTC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 861
BsrGI TGTACA 1 cut(s) 995
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 366, 857
BssMI GATC 2 cut(s) 312, 493
BssNI GRCGYC 2 cut(s) 517, 597
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 2 cut(s) 290, 731
BstACI GRCGYC 2 cut(s) 517, 597
BstAUI TGTACA 1 cut(s) 995
BstC8I GCNNGC 2 cut(s) 478, 531
BstDEI CTNAG 1 cut(s) 838
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 2 cut(s) 57, 444
BstFNI CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 2 cut(s) 315, 496
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 2 cut(s) 312, 493
BstMCI CGRYCG 1 cut(s) 857
BstMWI GCNNNNNNNGC 6 cut(s) 329, 402, 477, 486, 718, 802
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 933
BstSFI CTRYAG 2 cut(s) 625, 733
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
BstV1I GCAGC 2 cut(s) 639, 733
BstZI CGGCCG 1 cut(s) 854
BsuRI GGCC 6 cut(s) 254, 276, 476, 701, 856, 926
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 57, 444
Cac8I GCNNGC 2 cut(s) 478, 531
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 253, 475
CseI GACGC 8 cut(s) 421, 469, 493, 525, 529, 619, 643, 701
Csp6I GTAC 1 cut(s) 996
CviAII CATG 4 cut(s) 122, 367, 406, 703
CviQI GTAC 1 cut(s) 996
DdeI CTNAG 1 cut(s) 838
DpnI GATC 2 cut(s) 314, 495
DpnII GATC 2 cut(s) 312, 493
EaeI YGGCCR 2 cut(s) 699, 854
EagI CGGCCG 1 cut(s) 854
Eam1104I CTCTTC 2 cut(s) 290, 731
EarI CTCTTC 2 cut(s) 290, 731
EciI GGCGGA 3 cut(s) 310, 380, 545
Ecl136II GAGCTC 1 cut(s) 388
EclXI CGGCCG 1 cut(s) 854
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 390, 759
Eco52I CGGCCG 1 cut(s) 854
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 2 cut(s) 383, 665
EcoICRI GAGCTC 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 2 cut(s) 390, 759
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 4 cut(s) 125, 370, 409, 706
FaiI YATR 6 cut(s) 123, 368, 407, 590, 704, 1036
FatI CATG 4 cut(s) 121, 366, 405, 702
FauI CCCGC 4 cut(s) 437, 485, 659, 726
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 394, 628, 688, 722
FokI GGATG 2 cut(s) 44, 431
FriOI GRGCYC 2 cut(s) 390, 759
Fsp4HI GCNGC 4 cut(s) 394, 628, 688, 722
GlaI GCGC 1 cut(s) 503
GluI GCNGC 4 cut(s) 394, 628, 688, 722
GsuI CTGGAG 3 cut(s) 520, 560, 629
HaeIII GGCC 6 cut(s) 254, 276, 476, 701, 856, 926
HapII CCGG 2 cut(s) 709, 934
HgaI GACGC 8 cut(s) 421, 469, 493, 525, 529, 619, 643, 701
HhaI GCGC 1 cut(s) 504
Hin1I GRCGYC 2 cut(s) 517, 597
Hin1II CATG 4 cut(s) 125, 370, 409, 706
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 3 cut(s) 484, 601, 658
HindII GTYRAC 3 cut(s) 484, 601, 658
HinfI GANTC 3 cut(s) 266, 844, 850
HpaII CCGG 2 cut(s) 709, 934
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 5 cut(s) 484, 601, 658, 877, 996
Hpy188I TCNGA 6 cut(s) 238, 312, 439, 493, 849, 1012
Hpy188III TCNNGA 1 cut(s) 667
Hpy8I GTNNAC 5 cut(s) 484, 601, 658, 877, 996
Hpy99I CGWCG 4 cut(s) 519, 635, 659, 695
HpyAV CCTTC 7 cut(s) 52, 74, 138, 210, 243, 469, 793
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 2 cut(s) 4, 627
HpyF10VI GCNNNNNNNGC 6 cut(s) 329, 402, 477, 486, 718, 802
HpyF3I CTNAG 1 cut(s) 838
HpySE526I ACGT 1 cut(s) 597
Hsp92I GRCGYC 2 cut(s) 517, 597
Hsp92II CATG 4 cut(s) 125, 370, 409, 706
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 312, 493
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 5 cut(s) 393, 494, 648, 793, 802
LpnPI CCDG 8 cut(s) 535, 550, 590, 637, 659, 722, 878, 947
Lsp1109I GCAGC 2 cut(s) 639, 733
MaeII ACGT 1 cut(s) 597
MalI GATC 2 cut(s) 314, 495
MboI GATC 2 cut(s) 312, 493
MboII GAAGA 4 cut(s) 277, 445, 718, 954
MhlI GDGCHC 3 cut(s) 390, 413, 759
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 4 cut(s) 95, 766, 958, 979
MluI ACGCGT 1 cut(s) 693
MluNI TGGCCA 1 cut(s) 701
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 261, 462
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 1 cut(s) 911
Msp20I TGGCCA 1 cut(s) 701
MspI CCGG 2 cut(s) 709, 934
MspR9I CCNGG 1 cut(s) 935
MvnI CGCG 7 cut(s) 432, 471, 480, 504, 654, 690, 695
MwoI GCNNNNNNNGC 6 cut(s) 329, 402, 477, 486, 718, 802
NciI CCSGG 1 cut(s) 935
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 312, 493
NlaIII CATG 4 cut(s) 125, 370, 409, 706
NlaIV GGNNCC 3 cut(s) 490, 716, 863
NmeAIII GCCGAG 1 cut(s) 882
NspI RCATGY 1 cut(s) 409
PaeR7I CTCGAG 2 cut(s) 383, 665
PciSI GCTCTTC 1 cut(s) 731
PcsI WCGNNNNNNNCGW 3 cut(s) 429, 537, 663
PfeI GAWTC 2 cut(s) 844, 850
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 4 cut(s) 395, 629, 689, 723
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 390
PspN4I GGNNCC 3 cut(s) 490, 716, 863
PspPI GGNCC 2 cut(s) 253, 475
PspXI VCTCGAGB 1 cut(s) 383
PstI CTGCAG 1 cut(s) 629
RsaI GTAC 1 cut(s) 997
RsaNI GTAC 1 cut(s) 996
SacI GAGCTC 1 cut(s) 390
SalI GTCGAC 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 1 cut(s) 911
SatI GCNGC 4 cut(s) 394, 628, 688, 722
Sau3AI GATC 2 cut(s) 312, 493
Sau96I GGNCC 2 cut(s) 253, 475
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 3 cut(s) 390, 413, 759
SfcI CTRYAG 2 cut(s) 625, 733
Sfr274I CTCGAG 2 cut(s) 383, 665
SlaI CTCGAG 2 cut(s) 383, 665
SmlI CTYRAG 3 cut(s) 383, 497, 665
SmoI CTYRAG 3 cut(s) 383, 497, 665
Sse9I AATT 4 cut(s) 95, 766, 958, 979
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 933
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 600
TaqI TCGA 8 cut(s) 264, 279, 384, 633, 657, 666, 753, 780
TasI AATT 4 cut(s) 95, 766, 958, 979
TatI WGTACW 1 cut(s) 995
TauI GCSGC 2 cut(s) 396, 690
TfiI GAWTC 2 cut(s) 844, 850
Tru1I TTAA 1 cut(s) 911
Tru9I TTAA 1 cut(s) 911
TseI GCWGC 2 cut(s) 627, 721
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 1 cut(s) 979
XceI RCATGY 1 cut(s) 409
XhoI CTCGAG 2 cut(s) 383, 665
XmiI GTMKAC 1 cut(s) 657
ZraI GACGTC 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.