pycom04g09870
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016609
Physical Location & Seq
Reverse (-)
12608379 .. 12608753
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09870.1

Sequence Viewer

Length: 375 bp
ATGTGCCTCGAAATCCTCTCTTCCCGCATTGTCGAAATCGTCCCACTTCTTGTCTTCCTCCTCCGCGAAGCCCACGTCAATGGCTCCGATCTCCGCCGCGTCATCAATCGCCGCCTCAGACTCCTCGCCTGCAGCGTCAAAACTTGCCTTCGCCCTACCTTCTACTTCCTACAGAGCATCAACAATTCCCAAGCCAACAAACACACCTCCCTCATCTCCTGCAGCATGGAAGACAAGCTCCTGCCCCGAATCGACTACCTAGAAAAAATCGGCTTCTCTTGCCGCAACACGATGTCAATGTTCCGGCGGTTCCCGCAACTGTTCTGCTACAGAAAAAAGGAAGAAATAGAGGTTTTATGGGATTTTGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

125

Amino Acids

14.68

Weight (kDa)

9.38

Isoelectric Point (pI)

76.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 18 - 113 3.1e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 66, 99
AciI CCGC 8 cut(s) 25, 64, 94, 97, 112, 283, 307, 314
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 132, 222
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
BbsI GAAGAC 2 cut(s) 46, 237
BbvI GCAGC 2 cut(s) 144, 234
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 4 cut(s) 130, 170, 220, 328
BisI GCNGC 5 cut(s) 97, 112, 133, 223, 283
BlsI GCNGC 5 cut(s) 98, 113, 134, 224, 284
BmgBI CACGTC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 85, 311
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 46, 237
BseMII CTCAG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 50, 113
BseXI GCAGC 2 cut(s) 144, 234
Bsh1236I CGCG 2 cut(s) 66, 99
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 8 cut(s) 25, 64, 94, 97, 112, 283, 307, 314
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 2 cut(s) 66, 99
BspLI GGNNCC 2 cut(s) 85, 311
BspMAI CTGCAG 2 cut(s) 134, 224
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 116
BstFNI CGCG 2 cut(s) 66, 99
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 279, 313
BstSFI CTRYAG 4 cut(s) 130, 170, 220, 328
BstUI CGCG 2 cut(s) 66, 99
BstV1I GCAGC 2 cut(s) 144, 234
BstV2I GAAGAC 2 cut(s) 46, 237
BstXI CCANNNNNNTGG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 130
CseI GACGC 2 cut(s) 88, 124
CviAII CATG 1 cut(s) 226
CviJI RGCY 5 cut(s) 71, 84, 194, 238, 273
CviKI_1 RGCY 5 cut(s) 71, 84, 194, 238, 273
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 83
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 227, 358
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 225
FauI CCCGC 2 cut(s) 32, 321
Fnu4HI GCNGC 5 cut(s) 97, 112, 133, 223, 283
Fsp4HI GCNGC 5 cut(s) 97, 112, 133, 223, 283
FspBI CTAG 1 cut(s) 260
GluI GCNGC 5 cut(s) 97, 112, 133, 223, 283
HapII CCGG 1 cut(s) 304
HgaI GACGC 2 cut(s) 88, 124
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 120, 249
HpaII CCGG 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 88, 119
HpyAV CCTTC 2 cut(s) 158, 169
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 132, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 313
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 89, 243
LpnPI CCDG 4 cut(s) 142, 232, 254, 317
Lsp1109I GCAGC 2 cut(s) 144, 234
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 4 cut(s) 12, 46, 242, 353
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 9 cut(s) 17, 26, 68, 71, 125, 134, 217, 221, 343
MslI CAYNNNNRTG 1 cut(s) 78
MspI CCGG 1 cut(s) 304
MvnI CGCG 2 cut(s) 66, 99
MwoI GCNNNNNNNGC 2 cut(s) 279, 313
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 85, 311
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 5 cut(s) 98, 113, 134, 224, 284
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 85, 311
PstI CTGCAG 2 cut(s) 134, 224
RseI CAYNNNNRTG 1 cut(s) 78
SatI GCNGC 5 cut(s) 97, 112, 133, 223, 283
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 114
SetI ASST 6 cut(s) 78, 161, 209, 240, 261, 354
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 4 cut(s) 130, 170, 220, 328
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 1 cut(s) 184
SsiI CCGC 8 cut(s) 25, 64, 94, 97, 112, 283, 307, 314
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 9, 33, 252
TasI AATT 1 cut(s) 184
TauI GCSGC 3 cut(s) 99, 114, 285
TfiI GAWTC 1 cut(s) 249
TseI GCWGC 2 cut(s) 132, 222
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.