MD14G1036200.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016609
Physical Location & Seq
Reverse (-)
3256189 .. 3257226
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1036200.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGCAAGAAGTCCACTTCCTCTCCACCGCCATCGCCGCCACCAAACAGCCCCTTTTCTCCTCCATTCCCAATCCCATTCCCGTTCCCAAACCCCAATCCCCCTCCTCCTCTCACCATGACTCTTCCCACTCCTTTCCGCCGCCGAAGAAAACCCTCCACTGCCCAATCCTCTCCGCCACCAAAACCACCGTCTCCCTCCCCCTCCACTCCCTCAAACCCCCAACCACCCCCAACCCCCACTCCGACTTCCAAGAAAAAGTCCTCTACCTCGACTCCATCGGCCTCGACTTCTTCTCCCTAATCAACCACCACCCTCCCATCCTCTCCTCCCCTCTCTCCCACATCAAATCCACCGTCCACTTCCTCCTCACCTCCATCGGCTTCACCTCCCCGGAGTTCCGCCGCCTCATCGGCATGTGCCCCGAAATCCTCTCCTCCCGCGTCGCCGAAATCGTCCCAATCCTCACCTTCCTCCTCCGCGAAGCCCACGTCAACGGCTCCGATCTCCGCCGCGTCATCAACCGCCGCCCCAGACTCCTCGCCTGCAGCGTCAAAACCCGCCTCCGCCCCACCCTCTACTTCCTCCAGAGCATCGGCATTTCCCAAGTCAACAAACACACCTCCCTCCTCTCCTGCAGCGTTGAAGACAAGCTCCTGCCCCGAATCGACTACCTTGAAAAAATCGGCTTCTCCCGCCGCGACGCCCTGTCGATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATCGAGCAAAACTTCGAGCCGAAATTCAATTACTTCGTGGTGGAGATGGGGAGGGGGATGAAGGAGCTGAGGGAGTTTCCGCACTACTTCTCGTTCAGCTTGGAGAATCGGATTCGGCCGCGGCACCAGCGGTGCGTGGAGAAAGGGGTTTGCTTTCCGCTGCCGGTGTTGTTAAAGACGAGCGAGGCAAAGTTTCGCGATAGGTTGGAGTTTTGTTGTAATTCTTCTATTCCTTTGACAACTTCTCCTTTGTGGTGTACAAATTCGGTTTCCGATGATTTAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

346

Amino Acids

39.35

Weight (kDa)

9.34

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 159 - 314 1.6e-34 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36000 AT2G36000
fragaria_vesca FvH4_6g19990
malus_domestica MD14G1036200.v1.1
prunus_persica Prupe.7G098000_v2.0.a1
pyrus_communis pycom04g09870
rosa_chinensis RchiOBHm_Chr3g0475441
rosa_laevigata RLG00000023843
rosa_roxburghii Rroxscaffold_6G00406300
rosa_rugosa Rorug03G0148900
rosa_samantha Rh3BG229000 Rh3CG223400 Rh3DG224300
rosa_wichuraiana Rw3G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 870
AccII CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
AcoI YGGCCR 1 cut(s) 863
AcsI RAATTY 2 cut(s) 770, 1009
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 1 cut(s) 1006
AgsI TTSAA 3 cut(s) 644, 677, 775
AhdI GACNNNNNGTC 1 cut(s) 706
AjiI CACGTC 1 cut(s) 490
AluBI AGCT 4 cut(s) 652, 733, 814, 846
AluI AGCT 4 cut(s) 652, 733, 814, 846
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 2 cut(s) 280, 863
ApeKI GCWGC 4 cut(s) 546, 636, 730, 907
ApoI RAATTY 2 cut(s) 770, 1009
ArsI GACNNNNNNTTYG 6 cut(s) 174, 206, 339, 371, 474, 506
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 4 cut(s) 104, 361, 376, 457
BaeGI GKGCMC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 4 cut(s) 558, 648, 742, 894
BccI CCATC 5 cut(s) 38, 284, 326, 383, 787
BceAI ACGGC 1 cut(s) 511
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 196
BfmI CTRYAG 3 cut(s) 544, 634, 742
BglI GCCNNNNNGGC 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 392
BmeRI GACNNNNNGTC 1 cut(s) 706
BmgBI CACGTC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 499, 725, 872
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 2 cut(s) 600, 756
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 390, 866
Bse118I RCCGGY 1 cut(s) 910
BseDI CCNNGG 2 cut(s) 390, 866
BseGI GGATG 2 cut(s) 318, 810
BseMII CTCAG 1 cut(s) 806
BseRI GAGGAG 9 cut(s) 49, 94, 97, 316, 356, 424, 464, 527, 617
BseSI GKGCMC 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 863
BseXI GCAGC 4 cut(s) 558, 648, 742, 894
Bsh1236I CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
Bsh1285I CGRYCG 1 cut(s) 866
BshFI GGCC 2 cut(s) 282, 865
BshNI GGYRCC 1 cut(s) 870
BsiEI CGRYCG 1 cut(s) 866
BsiSI CCGG 3 cut(s) 392, 718, 911
BslFI GGGAC 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 2 cut(s) 282, 865
Bsp1286I GDGCHC 1 cut(s) 422
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 1 cut(s) 502
Bsp68I TCGCGA 1 cut(s) 945
BspANI GGCC 2 cut(s) 282, 865
BspCNI CTCAG 1 cut(s) 807
BspFNI CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
BspLI GGNNCC 3 cut(s) 499, 725, 872
BspMAI CTGCAG 2 cut(s) 548, 638
BspT107I GGYRCC 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 910
BsrGI TGTACA 1 cut(s) 1004
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 2 cut(s) 390, 866
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 190, 355
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 1004
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 1 cut(s) 815
BstDSI CCRYGG 1 cut(s) 866
BstF5I GGATG 2 cut(s) 318, 810
BstFNI CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 502
BstMCI CGRYCG 1 cut(s) 866
BstMWI GCNNNNNNNGC 5 cut(s) 35, 411, 693, 727, 874
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 390
BstSFI CTRYAG 3 cut(s) 544, 634, 742
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
BstV1I GCAGC 4 cut(s) 558, 648, 742, 894
BstV2I GAAGAC 1 cut(s) 651
BstZI CGGCCG 1 cut(s) 863
BsuRI GGCC 2 cut(s) 282, 865
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 1 cut(s) 16
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 318, 810
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
BtuMI TCGCGA 1 cut(s) 945
Cac8I GCNNGC 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 910
Cfr42I CCGCGG 1 cut(s) 869
CseI GACGC 4 cut(s) 430, 502, 538, 710
Csp6I GTAC 1 cut(s) 1005
CviAII CATG 2 cut(s) 116, 415
CviQI GTAC 1 cut(s) 1005
DdeI CTNAG 1 cut(s) 815
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DriI GACNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 863
EagI CGGCCG 1 cut(s) 863
Eam1104I CTCTTC 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 706
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 5 cut(s) 126, 163, 389, 497, 554
EclXI CGGCCG 1 cut(s) 863
Eco52I CGGCCG 1 cut(s) 863
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 2 cut(s) 119, 418
FaiI YATR 2 cut(s) 117, 416
FaqI GGGAC 1 cut(s) 440
FatI CATG 2 cut(s) 115, 414
FauI CCCGC 4 cut(s) 446, 566, 701, 735
FokI GGATG 2 cut(s) 305, 817
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 2 cut(s) 282, 865
HapII CCGG 3 cut(s) 392, 718, 911
HgaI GACGC 4 cut(s) 430, 502, 538, 710
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 2 cut(s) 119, 418
HincII GTYRAC 2 cut(s) 493, 610
HindII GTYRAC 2 cut(s) 493, 610
HinfI GANTC 6 cut(s) 119, 272, 534, 663, 853, 859
HpaII CCGG 3 cut(s) 392, 718, 911
HphI GGTGA 4 cut(s) 104, 361, 376, 457
Hpy166II GTNNAC 5 cut(s) 13, 358, 493, 610, 1005
Hpy188I TCNGA 4 cut(s) 244, 502, 858, 1021
Hpy188III TCNNGA 2 cut(s) 586, 944
Hpy8I GTNNAC 5 cut(s) 13, 358, 493, 610, 1005
Hpy99I CGWCG 2 cut(s) 446, 704
HpyAV CCTTC 2 cut(s) 478, 802
HpyCH4III ACNGT 2 cut(s) 190, 355
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 4, 546, 636
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 411, 693, 727, 874
HpyF3I CTNAG 1 cut(s) 815
HpySE526I ACGT 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 2 cut(s) 119, 418
KspI CCGCGG 1 cut(s) 869
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 503, 657, 811
Lsp1109I GCAGC 4 cut(s) 558, 648, 742, 894
LweI GCATC 2 cut(s) 600, 756
MaeII ACGT 1 cut(s) 489
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 5 cut(s) 114, 157, 283, 656, 963
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 5 cut(s) 770, 775, 967, 1009, 1033
MlyI GAGTC 3 cut(s) 113, 266, 528
MmeI TCCRAC 2 cut(s) 267, 933
MseI TTAA 1 cut(s) 920
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 4 cut(s) 733, 868, 877, 907
MspI CCGG 3 cut(s) 392, 718, 911
MspR9I CCNGG 1 cut(s) 392
MvnI CGCG 6 cut(s) 441, 480, 513, 699, 868, 945
MwoI GCNNNNNNNGC 5 cut(s) 35, 411, 693, 727, 874
NciI CCSGG 1 cut(s) 392
NdeII GATC 1 cut(s) 502
NlaIII CATG 2 cut(s) 119, 418
NlaIV GGNNCC 3 cut(s) 499, 725, 872
NruI TCGCGA 1 cut(s) 945
NspI RCATGY 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 450, 546
PfeI GAWTC 3 cut(s) 663, 853, 859
PleI GAGTC 3 cut(s) 113, 266, 528
PpsI GAGTC 3 cut(s) 113, 266, 528
PspN4I GGNNCC 3 cut(s) 499, 725, 872
PstI CTGCAG 2 cut(s) 548, 638
PvuII CAGCTG 1 cut(s) 733
RruI TCGCGA 1 cut(s) 945
RsaI GTAC 1 cut(s) 1006
RsaNI GTAC 1 cut(s) 1005
RseI CAYNNNNRTG 1 cut(s) 413
SacII CCGCGG 1 cut(s) 869
SaqAI TTAA 1 cut(s) 920
Sau3AI GATC 1 cut(s) 502
SchI GAGTC 3 cut(s) 113, 266, 528
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 2 cut(s) 600, 756
SfcI CTRYAG 3 cut(s) 544, 634, 742
Sfr303I CCGCGG 1 cut(s) 869
SgrBI CCGCGG 1 cut(s) 869
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 5 cut(s) 770, 775, 967, 1009, 1033
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 190, 355
TaiI ACGT 1 cut(s) 492
TaqI TCGA 6 cut(s) 270, 285, 666, 710, 750, 762
TasI AATT 5 cut(s) 770, 775, 967, 1009, 1033
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 8 cut(s) 38, 142, 405, 513, 528, 699, 868, 871
TfiI GAWTC 3 cut(s) 663, 853, 859
Tru1I TTAA 1 cut(s) 920
Tru9I TTAA 1 cut(s) 920
TscAI CASTG 1 cut(s) 164
TseI GCWGC 4 cut(s) 546, 636, 730, 907
TspDTI ATGAA 1 cut(s) 821
TspRI CASTG 1 cut(s) 164
XapI RAATTY 2 cut(s) 770, 1009
XceI RCATGY 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.