AT2G36090

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013943
Physical Location & Seq
Forward (+)
15158561 .. 15159639
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36090.1

Sequence Viewer

Length: 954 bp
ATGGCTAATTCCTCCTCCTTCTCCCCCTCTACCACCGTAACAGATTTAATCTCCACCGTCCATGACGACATCATAGAGTCTCACATCTTGACACGTCTCGACGGCGCAACCTTAGCATCCGTCTCTTGCGCCTCCTCACATCTTCATCATCTCGCTTCCAATGAGATCCTCTGGTCCAAAATCTGCCGATCCACGTGGCCTTCTTGCTCCGGTGGTTCTCGTTCTTTCTTCTCCGACGCTTATTCTATGGTGGAAACCGCCGGTACAGTCTCTGATCTCGACCGTCCGTTTCCGGAATTGATCTCCGCCGTGGATCTTCACTACAGAGGGAAGTTGATTTTTAGTAGAGTCGTGAAGACGGAGACTACGACGGCGTGGTTTAAGAGTTCGCCGTTGAGGATTGATCTGGTGGATACAAAGGATACGGTGGCGACGCCGATTAAGAGAAGACAGAGGACGGAAGACACGTGTCGTGATCTAGAGAAGGATTTGACTTTGAGCTGGATCGTGATTGATCCGATCGGGAAACGAGCGGCGAATATTTCGAGTCACCGGCCGGTGTCGGTGCAGAGGAACTGGATAAGCGGAGAAGTGGAGGCGCAATTCGCGACGGTGGTGGGGGCGGTGGAGTGTGTGATCACGGTGGTCACGTGCGGTGAGGAGGAGATGCACGTGAGGGAAGTGAGTCTCAAGGTAGAGAAGATGGAGGGAACGCATTTAAACGGGAGGGACAGTTTGGTTATTTTAAGGAGTGTCATGGAGGGTAAAAGGGTAAATGGAAGTAGGAGGGAAGTAGAATCGAAGAAGAGACACGAAGAGTTTATGGAGAAGAAGAGAGAGATGAAGGAGAAGAAGATGAGGGTAGAATCGGTATTTGACATTTTGACTGTAGCTTTTGGTATTTTAGGCTTTGTGTTGCTTGTTGTGTTTTGTCTTTGGAGAACCTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

317

Amino Acids

35.56

Weight (kDa)

7.14

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36090
fragaria_vesca FvH4_6g19530
malus_domestica MD12G1031600.v1.1 MD14G1031900.v1.1
prunus_persica Prupe.7G100900_v2.0.a1
pyrus_communis pycom12g02940 pycom14g02880
rosa_chinensis RchiOBHm_Chr3g0474871
rosa_laevigata RLG00000023886
rosa_multiflora Rmu_sc0011900.1_g000011
rosa_roxburghii Rroxscaffold_6G00406780
rosa_rugosa Rorug03G0145100
rosa_samantha Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100
rosa_wichuraiana Rw3G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 533
AccII CGCG 1 cut(s) 608
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 6 cut(s) 258, 306, 533, 585, 623, 654
AclWI GGATC 5 cut(s) 160, 183, 321, 509, 512
AcoI YGGCCR 1 cut(s) 554
AcvI CACGTG 4 cut(s) 195, 468, 651, 673
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 1 cut(s) 265
AflIII ACRYGT 3 cut(s) 92, 465, 467
AjiI CACGTC 1 cut(s) 95
AluBI AGCT 2 cut(s) 501, 893
AluI AGCT 2 cut(s) 501, 893
Alw26I GTCTC 7 cut(s) 84, 101, 127, 274, 356, 692, 802
AlwI GGATC 5 cut(s) 160, 183, 321, 509, 512
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 197, 554
AspLEI GCGC 3 cut(s) 107, 131, 601
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 542, 668
AvaII GGWCC 1 cut(s) 174
BbrPI CACGTG 4 cut(s) 195, 468, 651, 673
BbsI GAAGAC 3 cut(s) 362, 454, 468
BccI CCATC 1 cut(s) 697
BceAI ACGGC 4 cut(s) 118, 293, 376, 387
BciVI GTATCC 2 cut(s) 406, 415
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 7 cut(s) 84, 101, 127, 274, 356, 692, 802
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 2 cut(s) 322, 888
BfuI GTATCC 2 cut(s) 406, 415
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 174
BmsI GCATC 2 cut(s) 125, 657
BoxI GACNNNNGTC 1 cut(s) 468
BpiI GAAGAC 3 cut(s) 362, 454, 468
Bpu10I CCTNAGC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 674
BsaAI YACGTR 4 cut(s) 195, 468, 651, 673
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 2 cut(s) 209, 292
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bse118I RCCGGY 3 cut(s) 260, 552, 556
Bse1I ACTGG 1 cut(s) 581
BseAI TCCGGA 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 4 cut(s) 4, 124, 674, 677
BseX3I CGGCCG 1 cut(s) 554
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 608
Bsh1285I CGRYCG 3 cut(s) 283, 522, 557
BshFI GGCC 2 cut(s) 199, 556
BsiEI CGRYCG 3 cut(s) 283, 522, 557
BsiSI CCGG 5 cut(s) 210, 261, 293, 553, 557
BslFI GGGAC 1 cut(s) 743
BsmAI GTCTC 7 cut(s) 84, 101, 127, 274, 356, 692, 802
BsmBI CGTCTC 2 cut(s) 101, 127
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 2 cut(s) 199, 556
Bsp13I TCCGGA 1 cut(s) 292
Bsp68I TCGCGA 1 cut(s) 608
BspACI CCGC 6 cut(s) 258, 306, 533, 585, 623, 654
BspANI GGCC 2 cut(s) 199, 556
BspEI TCCGGA 1 cut(s) 292
BspFNI CGCG 1 cut(s) 608
BspPI GGATC 5 cut(s) 160, 183, 321, 509, 512
BsrBI CCGCTC 1 cut(s) 533
BsrFI RCCGGY 3 cut(s) 260, 552, 556
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 3 cut(s) 260, 552, 556
BssECI CCNNGG 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 434
Bst4CI ACNGT 9 cut(s) 37, 58, 268, 284, 427, 613, 643, 734, 889
Bst6I CTCTTC 3 cut(s) 800, 810, 827
BstACI GRCGYC 1 cut(s) 434
BstBAI YACGTR 4 cut(s) 195, 468, 651, 673
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 608
BstHHI GCGC 3 cut(s) 107, 131, 601
BstMAI GTCTC 7 cut(s) 84, 101, 127, 274, 356, 692, 802
BstMCI CGRYCG 3 cut(s) 283, 522, 557
BstMWI GCNNNNNNNGC 2 cut(s) 113, 605
BstPAI GACNNNNGTC 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 322, 888
BstUI CGCG 1 cut(s) 608
BstV2I GAAGAC 3 cut(s) 362, 454, 468
BstX2I RGATCY 2 cut(s) 165, 313
BstYI RGATCY 2 cut(s) 165, 313
BstZI CGGCCG 1 cut(s) 554
BsuI GTATCC 2 cut(s) 406, 415
BsuRI GGCC 2 cut(s) 199, 556
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 116
BtuMI TCGCGA 1 cut(s) 608
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 3 cut(s) 107, 131, 601
Cfr10I RCCGGY 3 cut(s) 260, 552, 556
Cfr13I GGNCC 1 cut(s) 174
CseI GACGC 2 cut(s) 245, 442
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 62, 757
CviJI RGCY 6 cut(s) 5, 199, 501, 556, 893, 909
CviKI_1 RGCY 6 cut(s) 5, 199, 501, 556, 893, 909
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 1 cut(s) 112
DraI TTTAAA 1 cut(s) 720
EaeI YGGCCR 1 cut(s) 554
EagI CGGCCG 1 cut(s) 554
Eam1104I CTCTTC 3 cut(s) 800, 810, 827
EarI CTCTTC 3 cut(s) 800, 810, 827
EciI GGCGGA 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 554
Eco72I CACGTG 4 cut(s) 195, 468, 651, 673
Esp3I CGTCTC 2 cut(s) 101, 127
FaeI CATG 2 cut(s) 65, 760
FaiI YATR 7 cut(s) 63, 74, 248, 758, 824, 950, 952
FaqI GGGAC 1 cut(s) 743
FatI CATG 2 cut(s) 61, 756
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 1 cut(s) 479
GlaI GCGC 3 cut(s) 106, 130, 600
GluI GCNGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 199, 556
HapII CCGG 5 cut(s) 210, 261, 293, 553, 557
HgaI GACGC 2 cut(s) 245, 442
HhaI GCGC 3 cut(s) 107, 131, 601
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 2 cut(s) 65, 760
Hin6I GCGC 3 cut(s) 105, 129, 599
HinP1I GCGC 3 cut(s) 105, 129, 599
HinfI GANTC 6 cut(s) 77, 348, 547, 685, 797, 866
HpaII CCGG 5 cut(s) 210, 261, 293, 553, 557
HphI GGTGA 2 cut(s) 542, 668
Hpy188I TCNGA 3 cut(s) 235, 274, 519
Hpy99I CGWCG 5 cut(s) 104, 239, 373, 436, 613
HpyAV CCTTC 4 cut(s) 28, 210, 478, 838
HpyCH4III ACNGT 9 cut(s) 37, 58, 268, 284, 427, 613, 643, 734, 889
HpyCH4IV ACGT 5 cut(s) 94, 194, 467, 650, 672
HpyCH4V TGCA 2 cut(s) 568, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 605
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 5 cut(s) 94, 194, 467, 650, 672
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 2 cut(s) 65, 760
HspAI GCGC 3 cut(s) 105, 129, 599
Kpn2I TCCGGA 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 636
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 9 cut(s) 157, 223, 274, 306, 392, 487, 562, 566, 570
LweI GCATC 2 cut(s) 125, 657
MaeI CTAG 1 cut(s) 479
MaeII ACGT 5 cut(s) 94, 194, 467, 650, 672
MaeIII GTNAC 3 cut(s) 37, 548, 646
MbiI CCGCTC 1 cut(s) 533
MflI RGATCY 2 cut(s) 165, 313
MluCI AATT 3 cut(s) 7, 296, 602
MlyI GAGTC 4 cut(s) 86, 357, 556, 694
MmeI TCCRAC 1 cut(s) 258
MroI TCCGGA 1 cut(s) 292
MseI TTAA 5 cut(s) 47, 381, 441, 719, 746
MspI CCGG 5 cut(s) 210, 261, 293, 553, 557
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 2 cut(s) 113, 605
NlaIII CATG 2 cut(s) 65, 760
NmuCI GTSAC 2 cut(s) 548, 646
NruI TCGCGA 1 cut(s) 608
PcsI WCGNNNNNNNCGW 3 cut(s) 365, 464, 647
PfeI GAWTC 2 cut(s) 797, 866
PkrI GCNGC 1 cut(s) 535
Ple19I CGATCG 1 cut(s) 522
PleI GAGTC 4 cut(s) 85, 356, 555, 693
PmaCI CACGTG 4 cut(s) 195, 468, 651, 673
PmlI CACGTG 4 cut(s) 195, 468, 651, 673
PpsI GAGTC 4 cut(s) 85, 356, 555, 693
Ppu21I YACGTR 4 cut(s) 195, 468, 651, 673
PshAI GACNNNNGTC 1 cut(s) 468
PspCI CACGTG 4 cut(s) 195, 468, 651, 673
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 165, 313
PvuI CGATCG 1 cut(s) 522
RruI TCGCGA 1 cut(s) 608
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 5 cut(s) 47, 381, 441, 719, 746
SatI GCNGC 1 cut(s) 534
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 4 cut(s) 86, 357, 556, 694
SfaNI GCATC 2 cut(s) 125, 657
SfcI CTRYAG 2 cut(s) 322, 888
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 3 cut(s) 7, 296, 602
SsiI CCGC 6 cut(s) 258, 306, 533, 585, 623, 654
SspI AATATT 1 cut(s) 541
SspMI CTAG 1 cut(s) 479
TaaI ACNGT 9 cut(s) 37, 58, 268, 284, 427, 613, 643, 734, 889
TaiI ACGT 5 cut(s) 97, 197, 470, 653, 675
TaqI TCGA 4 cut(s) 99, 279, 545, 800
TasI AATT 3 cut(s) 7, 296, 602
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 2 cut(s) 797, 866
Tru1I TTAA 5 cut(s) 47, 381, 441, 719, 746
Tru9I TTAA 5 cut(s) 47, 381, 441, 719, 746
TseFI GTSAC 2 cut(s) 548, 646
Tsp45I GTSAC 2 cut(s) 548, 646
TspDTI ATGAA 2 cut(s) 134, 857
TspGWI ACGGA 4 cut(s) 109, 276, 374, 473
VpaK11BI GGWCC 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 478
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.