Rmu_sc0011900.1_g000011

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011900.1
OG0013943
Physical Location & Seq
Reverse (-)
43008 .. 44048
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011900.1_g000011.1.cds

Sequence Viewer

Length: 1041 bp
atggctcgctcctcccaccaacccccgtcaaccaccgtcgatgaagactcctccgcttcgatctccgccgtccatcccgacataattcaaactcacatcctcacccgcctcgacggccccactctcgcctccgccgcctgcacctccttccagctccactccctcgcctccgaccacggcatctgggccaacatctgccactccacgtggccctccaccacaacgccacgtctccgccaagtcatctccaccttccccgacggcgccttctctttcttctccgactccttcccgcttctcgccaacttagactccgcagccgcccccgccgccgatcatcactacagtccgactgagctaatctccgccgtcgatatctaccacggtgacaagctcatcttcagcaaggtggtggagacggagactgtgagcggatggttcacgtgctcgccgttccggattgacctgctggaccccaaggacgcggttccgacgccggtgaagtacccggtggggcaggaggccgacacgtgtcgcgatctgggggaggaactgaggctgagctggattctgatcgacccggtgggacggcgcgctatgaacctctcgagccacacggcggtttcggtgcagcggcactggctgagcggtgaggtgcacgcgcggttcgcgtcgattcttcccggccagagagggacggcgtcggagttcgtgcagtgcgggatcgtggtaacgtgcggcgctgggtcggagggaggggagttgcaggtgagggaggtgagcctgcaggtggaggacatggacggaatgcatttgaacgggaaggacggtttggtaattttgcagagggggttggagggcagaaaggggaggaatgggaggagaggggaggagggaaggaggagatacggagactacttggagaggaagagggaaaggaaggagaagaagatgaggacagaagagacattagacactttgtgtgtcacttttggcgtattgtggtttttccttttttggttatttattttctgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

346

Amino Acids

38.4

Weight (kDa)

6.01

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36090
fragaria_vesca FvH4_6g19530
malus_domestica MD12G1031600.v1.1 MD14G1031900.v1.1
prunus_persica Prupe.7G100900_v2.0.a1
pyrus_communis pycom12g02940 pycom14g02880
rosa_chinensis RchiOBHm_Chr3g0474871
rosa_laevigata RLG00000023886
rosa_multiflora Rmu_sc0011900.1_g000011
rosa_roxburghii Rroxscaffold_6G00406780
rosa_rugosa Rorug03G0145100
rosa_samantha Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100
rosa_wichuraiana Rw3G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 757, 778
Acc36I ACCTGC 3 cut(s) 474, 757, 778
AccB1I GGYRCC 1 cut(s) 263
AccBSI CCGCTC 2 cut(s) 432, 648
AccII CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
AccIII TCCGGA 1 cut(s) 456
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 385
AcvI CACGTG 3 cut(s) 207, 444, 531
AcyI GRCGYC 3 cut(s) 264, 494, 701
AdeI CACNNNGTG 1 cut(s) 981
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 619, 790
AflIII ACRYGT 2 cut(s) 528, 530
AgsI TTSAA 2 cut(s) 89, 817
AjiI CACGTC 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 4 cut(s) 154, 358, 394, 564
AluI AGCT 4 cut(s) 154, 358, 394, 564
Alw21I GWGCWC 2 cut(s) 449, 660
Alw26I GTCTC 5 cut(s) 236, 410, 416, 906, 959
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 607
Aor13HI TCCGGA 1 cut(s) 456
AoxI GGCC 5 cut(s) 115, 186, 209, 522, 685
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 317, 631
AspLEI GCGC 5 cut(s) 266, 594, 596, 664, 743
AspS9I GGNCC 4 cut(s) 116, 186, 210, 472
AsuC2I CCSGG 3 cut(s) 509, 581, 684
AsuHPI GGTGA 6 cut(s) 94, 398, 511, 662, 781, 790
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 660
BanI GGYRCC 1 cut(s) 263
BbrPI CACGTG 3 cut(s) 207, 444, 531
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 449, 660
BbvI GCAGC 2 cut(s) 329, 643
BccI CCATC 2 cut(s) 81, 429
BceAI ACGGC 9 cut(s) 53, 130, 193, 277, 353, 436, 605, 633, 714
BcnI CCSGG 3 cut(s) 509, 581, 684
BcoDI GTCTC 5 cut(s) 236, 410, 416, 906, 959
BfmI CTRYAG 3 cut(s) 343, 785, 1033
BfoI RGCGCY 2 cut(s) 267, 744
BfuAI ACCTGC 3 cut(s) 474, 757, 778
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 7 cut(s) 135, 318, 321, 330, 632, 635, 739
BlpI GCTNAGC 2 cut(s) 560, 644
BlsI GCNGC 7 cut(s) 136, 319, 322, 331, 633, 636, 740
Bme1390I CCNGG 3 cut(s) 509, 581, 684
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 607
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 4 cut(s) 116, 186, 210, 472
BmiI GGNNCC 4 cut(s) 118, 265, 474, 489
BmrFI CCNGG 3 cut(s) 509, 581, 684
BmsI GCATC 1 cut(s) 189
BoxI GACNNNNGTC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu1102I GCTNAGC 2 cut(s) 560, 644
BpuMI CCSGG 3 cut(s) 509, 581, 684
BsaAI YACGTR 3 cut(s) 207, 444, 531
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 3 cut(s) 264, 494, 701
BsaJI CCNNGG 3 cut(s) 175, 382, 477
BsaWI WCCGGW 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 619, 790
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 644
Bse8I GATNNNNATC 1 cut(s) 572
BseAI TCCGGA 1 cut(s) 456
BseDI CCNNGG 3 cut(s) 175, 382, 477
BseGI GGATG 3 cut(s) 73, 96, 440
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 619, 790
BseMII CTCAG 4 cut(s) 345, 545, 551, 635
BseNI ACTGG 1 cut(s) 644
BsePI GCGCGC 1 cut(s) 592
BseRI GAGGAG 4 cut(s) 40, 895, 905, 916
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 2 cut(s) 329, 643
BseYI CCCAGC 1 cut(s) 743
BsgI GTGCAG 3 cut(s) 124, 650, 734
Bsh1236I CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
BshFI GGCC 5 cut(s) 117, 188, 211, 524, 687
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 449, 660
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 5 cut(s) 457, 497, 509, 581, 684
BslFI GGGAC 2 cut(s) 600, 709
BslI CCNNNNNNNGG 2 cut(s) 619, 790
BsmAI GTCTC 5 cut(s) 236, 410, 416, 906, 959
BsmBI CGTCTC 2 cut(s) 236, 410
BsmFI GGGAC 2 cut(s) 600, 709
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 5 cut(s) 117, 188, 211, 524, 687
BsoBI CYCGRG 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 449, 660
Bsp13I TCCGGA 1 cut(s) 456
Bsp143I GATC 5 cut(s) 60, 334, 538, 573, 723
Bsp1720I GCTNAGC 2 cut(s) 560, 644
Bsp68I TCGCGA 1 cut(s) 537
BspANI GGCC 5 cut(s) 117, 188, 211, 524, 687
BspCNI CTCAG 4 cut(s) 346, 546, 552, 636
BspEI TCCGGA 1 cut(s) 456
BspFNI CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
BspLI GGNNCC 4 cut(s) 118, 265, 474, 489
BspMAI CTGCAG 2 cut(s) 789, 1037
BspMI ACCTGC 3 cut(s) 474, 757, 778
BspPI GGATC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 263
BsrBI CCGCTC 2 cut(s) 432, 648
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 3 cut(s) 175, 382, 477
BssHII GCGCGC 1 cut(s) 592
BssMI GATC 5 cut(s) 60, 334, 538, 573, 723
BssNI GRCGYC 3 cut(s) 264, 494, 701
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 5 cut(s) 37, 347, 386, 427, 830
Bst6I CTCTTC 2 cut(s) 923, 957
BstACI GRCGYC 3 cut(s) 264, 494, 701
BstBAI YACGTR 3 cut(s) 207, 444, 531
BstC8I GCNNGC 6 cut(s) 7, 139, 449, 594, 660, 785
BstDEI CTNAG 5 cut(s) 307, 354, 554, 560, 644
BstDSI CCRYGG 2 cut(s) 175, 382
BstF5I GGATG 3 cut(s) 73, 96, 440
BstFNI CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
BstH2I RGCGCY 2 cut(s) 267, 744
BstHHI GCGC 5 cut(s) 266, 594, 596, 664, 743
BstKTI GATC 5 cut(s) 63, 337, 541, 576, 726
BstMAI GTCTC 5 cut(s) 236, 410, 416, 906, 959
BstMBI GATC 5 cut(s) 60, 334, 538, 573, 723
BstMWI GCNNNNNNNGC 6 cut(s) 114, 134, 326, 329, 640, 668
BstPAI GACNNNNGTC 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 507, 579, 682
BstSFI CTRYAG 3 cut(s) 343, 785, 1033
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
BstV1I GCAGC 2 cut(s) 329, 643
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 5 cut(s) 117, 188, 211, 524, 687
BtgI CCRYGG 2 cut(s) 175, 382
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 3 cut(s) 73, 96, 440
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 2 cut(s) 637, 722
BtuMI TCGCGA 1 cut(s) 537
BveI ACCTGC 3 cut(s) 474, 757, 778
Cac8I GCNNGC 6 cut(s) 7, 139, 449, 594, 660, 785
CfoI GCGC 5 cut(s) 266, 594, 596, 664, 743
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 4 cut(s) 116, 186, 210, 472
CseI GACGC 4 cut(s) 491, 502, 660, 690
Csp6I GTAC 1 cut(s) 505
CviAII CATG 1 cut(s) 799
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 5 cut(s) 307, 354, 554, 560, 644
DinI GGCGCC 1 cut(s) 265
DpnI GATC 5 cut(s) 62, 336, 540, 575, 725
DpnII GATC 5 cut(s) 60, 334, 538, 573, 723
DraIII CACNNNGTG 1 cut(s) 981
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 923, 957
EarI CTCTTC 2 cut(s) 923, 957
EciI GGCGGA 4 cut(s) 55, 121, 224, 355
Eco130I CCWWGG 1 cut(s) 477
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 385
Eco72I CACGTG 3 cut(s) 207, 444, 531
Eco88I CYCGRG 1 cut(s) 607
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 813
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 2 cut(s) 236, 410
FaeI CATG 1 cut(s) 802
FaiI YATR 3 cut(s) 83, 599, 800
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 2 cut(s) 600, 709
FatI CATG 1 cut(s) 798
FauI CCCGC 4 cut(s) 113, 300, 334, 713
Fnu4HI GCNGC 7 cut(s) 135, 318, 321, 330, 632, 635, 739
FokI GGATG 3 cut(s) 60, 83, 447
Fsp4HI GCNGC 7 cut(s) 135, 318, 321, 330, 632, 635, 739
GlaI GCGC 5 cut(s) 265, 593, 595, 663, 742
GluI GCNGC 7 cut(s) 135, 318, 321, 330, 632, 635, 739
GsaI CCCAGC 1 cut(s) 747
HaeII RGCGCY 2 cut(s) 267, 744
HaeIII GGCC 5 cut(s) 117, 188, 211, 524, 687
HapII CCGG 5 cut(s) 457, 497, 509, 581, 684
HgaI GACGC 4 cut(s) 491, 502, 660, 690
HhaI GCGC 5 cut(s) 266, 594, 596, 664, 743
Hin1I GRCGYC 3 cut(s) 264, 494, 701
Hin1II CATG 1 cut(s) 802
Hin6I GCGC 5 cut(s) 264, 592, 594, 662, 741
HinP1I GCGC 5 cut(s) 264, 592, 594, 662, 741
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 5 cut(s) 47, 284, 311, 568, 676
HpaII CCGG 5 cut(s) 457, 497, 509, 581, 684
HphI GGTGA 6 cut(s) 94, 398, 511, 662, 781, 790
Hpy166II GTNNAC 3 cut(s) 30, 441, 658
Hpy188I TCNGA 7 cut(s) 172, 283, 351, 492, 573, 706, 751
Hpy188III TCNNGA 4 cut(s) 77, 457, 536, 607
Hpy8I GTNNAC 3 cut(s) 30, 441, 658
Hpy99I CGWCG 7 cut(s) 41, 116, 263, 374, 496, 676, 706
HpyAV CCTTC 7 cut(s) 157, 262, 277, 298, 817, 891, 934
HpyCH4III ACNGT 5 cut(s) 37, 347, 386, 427, 830
HpyCH4IV ACGT 5 cut(s) 206, 229, 443, 530, 734
HpyCH4V TGCA 9 cut(s) 141, 631, 658, 715, 766, 787, 811, 844, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 134, 326, 329, 640, 668
HpyF3I CTNAG 5 cut(s) 307, 354, 554, 560, 644
HpySE526I ACGT 5 cut(s) 206, 229, 443, 530, 734
Hsp92I GRCGYC 3 cut(s) 264, 494, 701
Hsp92II CATG 1 cut(s) 802
HspAI GCGC 5 cut(s) 264, 592, 594, 662, 741
KasI GGCGCC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 456
Kzo9I GATC 5 cut(s) 60, 334, 538, 573, 723
LmnI GCTCC 2 cut(s) 14, 159
Lsp1109I GCAGC 2 cut(s) 329, 643
LweI GCATC 1 cut(s) 189
MaeII ACGT 5 cut(s) 206, 229, 443, 530, 734
MaeIII GTNAC 3 cut(s) 386, 730, 985
MalI GATC 5 cut(s) 62, 336, 540, 575, 725
MbiI CCGCTC 2 cut(s) 432, 648
MboI GATC 5 cut(s) 60, 334, 538, 573, 723
MboII GAAGA 8 cut(s) 56, 268, 391, 671, 940, 958, 961, 974
MhlI GDGCHC 2 cut(s) 449, 660
MluCI AATT 2 cut(s) 84, 837
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 3 cut(s) 41, 278, 305
MmeI TCCRAC 7 cut(s) 195, 306, 374, 515, 684, 729, 834
Mph1103I ATGCAT 1 cut(s) 813
MroI TCCGGA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 5 cut(s) 457, 497, 509, 581, 684
MspR9I CCNGG 3 cut(s) 509, 581, 684
Mva1269I GAATGC 1 cut(s) 813
MvnI CGCG 6 cut(s) 485, 537, 594, 662, 664, 671
MwoI GCNNNNNNNGC 6 cut(s) 114, 134, 326, 329, 640, 668
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 3 cut(s) 509, 581, 684
NdeII GATC 5 cut(s) 60, 334, 538, 573, 723
NlaIII CATG 1 cut(s) 802
NlaIV GGNNCC 4 cut(s) 118, 265, 474, 489
NmuCI GTSAC 2 cut(s) 386, 985
NruI TCGCGA 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 813
PaeR7I CTCGAG 1 cut(s) 607
PaqCI CACCTGC 2 cut(s) 757, 778
PauI GCGCGC 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 449
PctI GAATGC 1 cut(s) 813
PfeI GAWTC 2 cut(s) 568, 676
PflFI GACNNNGTC 1 cut(s) 700
PkrI GCNGC 7 cut(s) 136, 319, 322, 331, 633, 636, 740
PleI GAGTC 3 cut(s) 41, 278, 305
PluTI GGCGCC 1 cut(s) 267
PmaCI CACGTG 3 cut(s) 207, 444, 531
PmlI CACGTG 3 cut(s) 207, 444, 531
PpsI GAGTC 3 cut(s) 41, 278, 305
Ppu21I YACGTR 3 cut(s) 207, 444, 531
PshAI GACNNNNGTC 1 cut(s) 531
PspCI CACGTG 3 cut(s) 207, 444, 531
PspFI CCCAGC 1 cut(s) 743
PspN4I GGNNCC 4 cut(s) 118, 265, 474, 489
PspPI GGNCC 4 cut(s) 116, 186, 210, 472
PstI CTGCAG 2 cut(s) 789, 1037
PsyI GACNNNGTC 1 cut(s) 700
PteI GCGCGC 1 cut(s) 592
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SatI GCNGC 7 cut(s) 135, 318, 321, 330, 632, 635, 739
Sau3AI GATC 5 cut(s) 60, 334, 538, 573, 723
Sau96I GGNCC 4 cut(s) 116, 186, 210, 472
SbfI CCTGCAGG 1 cut(s) 789
SchI GAGTC 3 cut(s) 41, 278, 305
ScrFI CCNGG 3 cut(s) 509, 581, 684
SdaI CCTGCAGG 1 cut(s) 789
SduI GDGCHC 2 cut(s) 449, 660
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 3 cut(s) 343, 785, 1033
SfoI GGCGCC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 607
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 607
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse8387I CCTGCAGG 1 cut(s) 789
Sse9I AATT 2 cut(s) 84, 837
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 507, 579, 682
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 5 cut(s) 37, 347, 386, 427, 830
TaiI ACGT 5 cut(s) 209, 232, 446, 533, 737
TaqI TCGA 7 cut(s) 39, 59, 111, 372, 576, 608, 674
TasI AATT 2 cut(s) 84, 837
TauI GCSGC 5 cut(s) 137, 323, 332, 637, 741
TfiI GAWTC 2 cut(s) 568, 676
TscAI CASTG 2 cut(s) 644, 722
TseFI GTSAC 2 cut(s) 386, 985
TseI GCWGC 2 cut(s) 317, 631
Tsp45I GTSAC 2 cut(s) 386, 985
TspDTI ATGAA 2 cut(s) 57, 614
TspGWI ACGGA 3 cut(s) 434, 819, 924
TspRI CASTG 2 cut(s) 644, 722
Tth111I GACNNNGTC 1 cut(s) 700
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.