Rh3DG220100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013943
Physical Location & Seq
Reverse (-)
20542699 .. 20544476
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG220100.1

Sequence Viewer

Length: 1038 bp
ATGGCTCGCTTCTCCCACCAACCTCCGTCAACCACCGTCGATGAAGACTCCTCCGCTTCGATCTCCGCCGTCCATCCCGACATAATTCAAACTCACATCCTCACCCGCCTCGACGGCCCCACTCTCGCCTCCGCCGCCTGCACCTCCTTCCAGCTCCACTCCCTCGCCTCCGACCACCGCATCTGGGCCAACATCTGCCACTCCACGTGGCCCTCCACCACAACGCCACGTCTCCGCCAAGTCATCTCCACCTTCCCCGACGGCGCCTTCTCTTTCTTCTCCGACTCCTTCCCGCTTCTCGCCAACTTAGACTCCGCAGCCGCTGCCGCCGATCATCACGACAGTCCGACTGAGCTAATCTCCGCCGTCGATATCTACCACGGTGACAAGCTCATCTTCAGCAAGGTGGTGGAGACGGAGACTGTGAGCGGATGGTTCACGTGCTCGCCGTTCCGGATTGACCTGCTGGACCCCAAGGACGTGGTTCCGACGCCGGTGAAGTACCCGGTGGGGCAGGAGGCCGACACGTGTCGCTATCTGGGGGAGGAACTGAGGCTGAGCTGGATTCTGATCGACCCCGTGGGACGGCGCGCTATGAACCTCTCGAGCCACACGGCGGTTTCGGTGCAGCGGCACTGGCTGAGCGGTGAGGTGCACGCGCGGTTCGCGTCGATTCTTCCCGGCCAGAGAGGGACGGCGTCGGAGTTCGTGCAGTGCGGGATCGTGGTGACGTGCGGCGCTGGGTCGGAGGGAGGAGAGTTGCAGGTGAGGGAGGTGAGCCTGCAGGTGGAGGACATGGACGGAATGCATTTGAACGGGAAGGACGGTTTGGTAATTTTGCAGAGGGGGTTGGAGGGCAGAAAGGGGAGGAATGGGAGGAGAGGGGAGGAGGGAAGGAGGAGATACGGAGACTACTTGGAGAGGAAGAGGGAAAGGAAGGAGAAGAAGAAGAGGACAGAAGGGACATTAGACACTTTGTGTGTCACTTTTGGCGTATTGGGGTTTTTCCTTTTTTGGTTATTTATTTTGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

345

Amino Acids

38.26

Weight (kDa)

6.36

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36090
fragaria_vesca FvH4_6g19530
malus_domestica MD12G1031600.v1.1 MD14G1031900.v1.1
prunus_persica Prupe.7G100900_v2.0.a1
pyrus_communis pycom12g02940 pycom14g02880
rosa_chinensis RchiOBHm_Chr3g0474871
rosa_laevigata RLG00000023886
rosa_multiflora Rmu_sc0011900.1_g000011
rosa_roxburghii Rroxscaffold_6G00406780
rosa_rugosa Rorug03G0145100
rosa_samantha Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100
rosa_wichuraiana Rw3G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 754, 775
Acc36I ACCTGC 3 cut(s) 471, 754, 775
AccB1I GGYRCC 1 cut(s) 263
AccBSI CCGCTC 2 cut(s) 429, 645
AccII CGCG 4 cut(s) 591, 659, 661, 668
AccIII TCCGGA 1 cut(s) 453
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 382
AcvI CACGTG 3 cut(s) 207, 441, 528
AcyI GRCGYC 3 cut(s) 264, 491, 698
AdeI CACNNNGTG 1 cut(s) 978
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 4 cut(s) 184, 585, 616, 787
AflIII ACRYGT 2 cut(s) 525, 527
AgsI TTSAA 2 cut(s) 89, 814
AjiI CACGTC 3 cut(s) 230, 481, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 4 cut(s) 154, 355, 391, 561
AluI AGCT 4 cut(s) 154, 355, 391, 561
Alw21I GWGCWC 2 cut(s) 446, 657
Alw26I GTCTC 4 cut(s) 236, 407, 413, 903
Alw44I GTGCAC 1 cut(s) 653
AlwI GGATC 1 cut(s) 728
AlwNI CAGNNNCTG 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 604
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 5 cut(s) 115, 186, 209, 519, 682
ApaLI GTGCAC 1 cut(s) 653
ApeKI GCWGC 3 cut(s) 317, 323, 628
AspLEI GCGC 5 cut(s) 266, 591, 593, 661, 740
AspS9I GGNCC 4 cut(s) 116, 186, 210, 469
AsuC2I CCSGG 2 cut(s) 506, 681
AsuHPI GGTGA 7 cut(s) 94, 395, 508, 659, 739, 778, 787
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 263
BbrPI CACGTG 3 cut(s) 207, 441, 528
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 446, 657
BbvI GCAGC 3 cut(s) 310, 329, 640
BccI CCATC 2 cut(s) 81, 426
BceAI ACGGC 8 cut(s) 53, 130, 277, 350, 433, 602, 630, 711
BcnI CCSGG 2 cut(s) 506, 681
BcoDI GTCTC 4 cut(s) 236, 407, 413, 903
BfmI CTRYAG 1 cut(s) 782
BfoI RGCGCY 2 cut(s) 267, 741
BfuAI ACCTGC 3 cut(s) 471, 754, 775
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 8 cut(s) 135, 318, 321, 324, 327, 629, 632, 736
BlpI GCTNAGC 2 cut(s) 557, 641
BlsI GCNGC 8 cut(s) 136, 319, 322, 325, 328, 630, 633, 737
Bme1390I CCNGG 2 cut(s) 506, 681
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 604
BmgBI CACGTC 3 cut(s) 230, 481, 732
BmgT120I GGNCC 4 cut(s) 116, 186, 210, 469
BmiI GGNNCC 4 cut(s) 118, 265, 471, 486
BmrFI CCNGG 2 cut(s) 506, 681
BmsI GCATC 1 cut(s) 189
BoxI GACNNNNGTC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 344, 376
Bpu1102I GCTNAGC 2 cut(s) 557, 641
BpuMI CCSGG 2 cut(s) 506, 681
BsaAI YACGTR 3 cut(s) 207, 441, 528
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 3 cut(s) 264, 491, 698
BsaJI CCNNGG 3 cut(s) 379, 474, 579
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 585, 616, 787
Bse118I RCCGGY 1 cut(s) 493
Bse1I ACTGG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 379, 474, 579
BseGI GGATG 3 cut(s) 73, 96, 437
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 4 cut(s) 184, 585, 616, 787
BseMII CTCAG 4 cut(s) 342, 542, 548, 632
BseNI ACTGG 1 cut(s) 641
BsePI GCGCGC 1 cut(s) 589
BseRI GAGGAG 5 cut(s) 40, 768, 892, 902, 913
BseSI GKGCMC 1 cut(s) 657
BseXI GCAGC 3 cut(s) 310, 329, 640
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 3 cut(s) 124, 647, 731
Bsh1236I CGCG 4 cut(s) 591, 659, 661, 668
BshFI GGCC 5 cut(s) 117, 188, 211, 521, 684
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 446, 657
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 4 cut(s) 454, 494, 506, 681
BslFI GGGAC 3 cut(s) 597, 706, 976
BslI CCNNNNNNNGG 4 cut(s) 184, 585, 616, 787
BsmAI GTCTC 4 cut(s) 236, 407, 413, 903
BsmBI CGTCTC 2 cut(s) 236, 407
BsmFI GGGAC 3 cut(s) 597, 706, 976
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 5 cut(s) 117, 188, 211, 521, 684
BsoBI CYCGRG 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 446, 657
Bsp13I TCCGGA 1 cut(s) 453
Bsp143I GATC 4 cut(s) 60, 331, 570, 720
Bsp1720I GCTNAGC 2 cut(s) 557, 641
BspANI GGCC 5 cut(s) 117, 188, 211, 521, 684
BspCNI CTCAG 4 cut(s) 343, 543, 549, 633
BspEI TCCGGA 1 cut(s) 453
BspFNI CGCG 4 cut(s) 591, 659, 661, 668
BspLI GGNNCC 4 cut(s) 118, 265, 471, 486
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 3 cut(s) 471, 754, 775
BspPI GGATC 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 263
BsrBI CCGCTC 2 cut(s) 429, 645
BsrFI RCCGGY 1 cut(s) 493
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 379, 474, 579
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 4 cut(s) 60, 331, 570, 720
BssNI GRCGYC 3 cut(s) 264, 491, 698
BssT1I CCWWGG 1 cut(s) 474
Bst4CI ACNGT 5 cut(s) 37, 344, 383, 424, 827
Bst6I CTCTTC 2 cut(s) 920, 944
BstACI GRCGYC 3 cut(s) 264, 491, 698
BstAPI GCANNNNNTGC 1 cut(s) 323
BstBAI YACGTR 3 cut(s) 207, 441, 528
BstC8I GCNNGC 6 cut(s) 7, 139, 446, 591, 657, 782
BstDEI CTNAG 5 cut(s) 307, 351, 551, 557, 641
BstDSI CCRYGG 2 cut(s) 379, 579
BstF5I GGATG 3 cut(s) 73, 96, 437
BstFNI CGCG 4 cut(s) 591, 659, 661, 668
BstH2I RGCGCY 2 cut(s) 267, 741
BstHHI GCGC 5 cut(s) 266, 591, 593, 661, 740
BstKTI GATC 4 cut(s) 63, 334, 573, 723
BstMAI GTCTC 4 cut(s) 236, 407, 413, 903
BstMBI GATC 4 cut(s) 60, 331, 570, 720
BstMWI GCNNNNNNNGC 6 cut(s) 114, 134, 323, 326, 637, 665
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 504, 679
BstSFI CTRYAG 1 cut(s) 782
BstSLI GKGCMC 1 cut(s) 657
BstUI CGCG 4 cut(s) 591, 659, 661, 668
BstV1I GCAGC 3 cut(s) 310, 329, 640
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 481
BsuRI GGCC 5 cut(s) 117, 188, 211, 521, 684
BtgI CCRYGG 2 cut(s) 379, 579
BtrI CACGTC 3 cut(s) 230, 481, 732
BtsCI GGATG 3 cut(s) 73, 96, 437
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 2 cut(s) 634, 719
BveI ACCTGC 3 cut(s) 471, 754, 775
Cac8I GCNNGC 6 cut(s) 7, 139, 446, 591, 657, 782
CaiI CAGNNNCTG 1 cut(s) 323
CfoI GCGC 5 cut(s) 266, 591, 593, 661, 740
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 4 cut(s) 116, 186, 210, 469
CseI GACGC 3 cut(s) 499, 657, 687
Csp6I GTAC 1 cut(s) 502
CviAII CATG 1 cut(s) 796
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 5 cut(s) 307, 351, 551, 557, 641
DinI GGCGCC 1 cut(s) 265
DpnI GATC 4 cut(s) 62, 333, 572, 722
DpnII GATC 4 cut(s) 60, 331, 570, 720
DraIII CACNNNGTG 1 cut(s) 978
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 2 cut(s) 920, 944
EarI CTCTTC 2 cut(s) 920, 944
EciI GGCGGA 4 cut(s) 55, 121, 224, 352
Eco130I CCWWGG 1 cut(s) 474
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 382
Eco72I CACGTG 3 cut(s) 207, 441, 528
Eco88I CYCGRG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 810
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 2 cut(s) 236, 407
FaeI CATG 1 cut(s) 799
FaiI YATR 3 cut(s) 83, 596, 797
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 3 cut(s) 597, 706, 976
FatI CATG 1 cut(s) 795
FauI CCCGC 3 cut(s) 113, 300, 710
Fnu4HI GCNGC 8 cut(s) 135, 318, 321, 324, 327, 629, 632, 736
FokI GGATG 3 cut(s) 60, 83, 444
Fsp4HI GCNGC 8 cut(s) 135, 318, 321, 324, 327, 629, 632, 736
GlaI GCGC 5 cut(s) 265, 590, 592, 660, 739
GluI GCNGC 8 cut(s) 135, 318, 321, 324, 327, 629, 632, 736
GsaI CCCAGC 1 cut(s) 744
HaeII RGCGCY 2 cut(s) 267, 741
HaeIII GGCC 5 cut(s) 117, 188, 211, 521, 684
HapII CCGG 4 cut(s) 454, 494, 506, 681
HgaI GACGC 3 cut(s) 499, 657, 687
HhaI GCGC 5 cut(s) 266, 591, 593, 661, 740
Hin1I GRCGYC 3 cut(s) 264, 491, 698
Hin1II CATG 1 cut(s) 799
Hin6I GCGC 5 cut(s) 264, 589, 591, 659, 738
HinP1I GCGC 5 cut(s) 264, 589, 591, 659, 738
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 5 cut(s) 47, 284, 311, 565, 673
HpaII CCGG 4 cut(s) 454, 494, 506, 681
HphI GGTGA 7 cut(s) 94, 395, 508, 659, 739, 778, 787
Hpy166II GTNNAC 3 cut(s) 30, 438, 655
Hpy188I TCNGA 7 cut(s) 172, 283, 348, 489, 570, 703, 748
Hpy188III TCNNGA 4 cut(s) 77, 338, 454, 604
Hpy8I GTNNAC 3 cut(s) 30, 438, 655
Hpy99I CGWCG 7 cut(s) 41, 116, 263, 371, 493, 673, 703
HpyAV CCTTC 8 cut(s) 157, 262, 277, 298, 814, 888, 931, 953
HpyCH4III ACNGT 5 cut(s) 37, 344, 383, 424, 827
HpyCH4IV ACGT 6 cut(s) 206, 229, 440, 480, 527, 731
HpyCH4V TGCA 9 cut(s) 141, 628, 655, 712, 763, 784, 808, 841, 1032
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 134, 323, 326, 637, 665
HpyF3I CTNAG 5 cut(s) 307, 351, 551, 557, 641
HpySE526I ACGT 6 cut(s) 206, 229, 440, 480, 527, 731
Hsp92I GRCGYC 3 cut(s) 264, 491, 698
Hsp92II CATG 1 cut(s) 799
HspAI GCGC 5 cut(s) 264, 589, 591, 659, 738
KasI GGCGCC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 453
Kzo9I GATC 4 cut(s) 60, 331, 570, 720
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 3 cut(s) 310, 329, 640
LweI GCATC 1 cut(s) 189
MaeII ACGT 6 cut(s) 206, 229, 440, 480, 527, 731
MaeIII GTNAC 3 cut(s) 383, 727, 982
MalI GATC 4 cut(s) 62, 333, 572, 722
MbiI CCGCTC 2 cut(s) 429, 645
MboI GATC 4 cut(s) 60, 331, 570, 720
MboII GAAGA 8 cut(s) 56, 268, 388, 668, 937, 955, 958, 961
MhlI GDGCHC 2 cut(s) 446, 657
MluCI AATT 2 cut(s) 84, 834
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 3 cut(s) 41, 278, 305
MmeI TCCRAC 7 cut(s) 195, 306, 371, 512, 681, 726, 831
Mph1103I ATGCAT 1 cut(s) 810
MroI TCCGGA 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 323, 631
MspI CCGG 4 cut(s) 454, 494, 506, 681
MspR9I CCNGG 2 cut(s) 506, 681
Mva1269I GAATGC 1 cut(s) 810
MvnI CGCG 4 cut(s) 591, 659, 661, 668
MwoI GCNNNNNNNGC 6 cut(s) 114, 134, 323, 326, 637, 665
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 2 cut(s) 506, 681
NdeII GATC 4 cut(s) 60, 331, 570, 720
NlaIII CATG 1 cut(s) 799
NlaIV GGNNCC 4 cut(s) 118, 265, 471, 486
NmuCI GTSAC 3 cut(s) 383, 727, 982
NsiI ATGCAT 1 cut(s) 810
PaeR7I CTCGAG 1 cut(s) 604
PaqCI CACCTGC 2 cut(s) 754, 775
PauI GCGCGC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PctI GAATGC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 565, 673
PflFI GACNNNGTC 1 cut(s) 697
PkrI GCNGC 8 cut(s) 136, 319, 322, 325, 328, 630, 633, 737
PleI GAGTC 3 cut(s) 41, 278, 305
PluTI GGCGCC 1 cut(s) 267
PmaCI CACGTG 3 cut(s) 207, 441, 528
PmlI CACGTG 3 cut(s) 207, 441, 528
PpsI GAGTC 3 cut(s) 41, 278, 305
Ppu21I YACGTR 3 cut(s) 207, 441, 528
PshAI GACNNNNGTC 1 cut(s) 528
PspCI CACGTG 3 cut(s) 207, 441, 528
PspFI CCCAGC 1 cut(s) 740
PspN4I GGNNCC 4 cut(s) 118, 265, 471, 486
PspPI GGNCC 4 cut(s) 116, 186, 210, 469
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 697
PteI GCGCGC 1 cut(s) 589
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SatI GCNGC 8 cut(s) 135, 318, 321, 324, 327, 629, 632, 736
Sau3AI GATC 4 cut(s) 60, 331, 570, 720
Sau96I GGNCC 4 cut(s) 116, 186, 210, 469
SbfI CCTGCAGG 1 cut(s) 786
SchI GAGTC 3 cut(s) 41, 278, 305
ScrFI CCNGG 2 cut(s) 506, 681
SdaI CCTGCAGG 1 cut(s) 786
SduI GDGCHC 2 cut(s) 446, 657
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 782
SfoI GGCGCC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 604
SgrAI CRCCGGYG 1 cut(s) 493
SinI GGWCC 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse8387I CCTGCAGG 1 cut(s) 786
Sse9I AATT 2 cut(s) 84, 834
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 504, 679
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 5 cut(s) 37, 344, 383, 424, 827
TaiI ACGT 6 cut(s) 209, 232, 443, 483, 530, 734
TaqI TCGA 7 cut(s) 39, 59, 111, 369, 573, 605, 671
TasI AATT 2 cut(s) 84, 834
TauI GCSGC 5 cut(s) 137, 323, 329, 634, 738
TfiI GAWTC 2 cut(s) 565, 673
TscAI CASTG 2 cut(s) 641, 719
TseFI GTSAC 3 cut(s) 383, 727, 982
TseI GCWGC 3 cut(s) 317, 323, 628
Tsp45I GTSAC 3 cut(s) 383, 727, 982
TspDTI ATGAA 2 cut(s) 57, 611
TspGWI ACGGA 4 cut(s) 15, 431, 816, 921
TspRI CASTG 2 cut(s) 641, 719
Tth111I GACNNNGTC 1 cut(s) 697
VneI GTGCAC 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 604
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.