Rw3G017700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013943
Physical Location & Seq
Reverse (-)
19409017 .. 19410056
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017700.1

Sequence Viewer

Length: 993 bp
ATGGCTCGCTCCTCCCACCAACCTCCGTCAACCACCGTCGATGAAGACTCCTCCGCTTCGATCTCCGCCGTCCATCCCGACATAATTCAAACTCACATCCTCACCCGCCTCGACGGCCCCACTCTCGCCTCCGCCGCCTGCACCTCCTTCCAGCTCCGCTCCCTCGCCTCCGACCACCGCATCTGGGCCAACATCTGCCACTCCACGTGGCCCTCCACCACAACGCCACGTCTCCGCCAAGTCATCTCCACCTTCCCCGACGGCGCCTTCTCTTTCTTCTCCGACTCCTTCCCGCTTCTCGCCAACTTAGACTCCGCAGCCGCCCCCGCCACGATCATCACGACACTCATCTTCAGCAAGGTGGTGGAGACGGAGACTGTGAGCGGATGGTTCACGTGCTCGCCGTTCCGGATTGACCTGCTGGACCCCAAGGACGTGGTTCCGACGCCGGTGAAGTACCCGGTGGGGCAGGAGGCCGACACGTGTCGCGATCTGGGGGAGGAACTGAGGCTGAGCTGGATTCTGATCGACCCGGTGGGACGGCGCGCTATGAACCTCTCGAGCCACACGGCGGTTTCGGTGCAGCGGCACTGGCTGAGCGGTGAGGTGCACGCGCGGTTCGCGTCGATTCTTCCCGGCCAGAGAGGGACGGCGTCGGAGTTCGTGCAGTGCGGGATCGTGGTGACGTGCGGCGCTGGGTCGGAGGGAGGGGAGTTGCAGGTGAGGGAGGTGAGCCTGCAGGTGGAGGACATGGACGGAATGCATTTGAACGGGAAGGACGGTTTGGTAATTTTGCAGAGGGGGTTGGAGGGCAGAAAGGGGAGGAATGGGAGGAGAGGGGAGGAGGGAAGGAGGAGATACGGAGACTACTTGGAGAGGAAGAGGGAAAGGAAGGAGAAGAAGATGAGGACAGAAGGGACATTAGACACTTTGTGTGTCACTTTTGGCGTATTGGGGTTTTTCCTTTTTTGGTTATTTATTTTGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

330

Amino Acids

36.49

Weight (kDa)

6.76

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36090
fragaria_vesca FvH4_6g19530
malus_domestica MD12G1031600.v1.1 MD14G1031900.v1.1
prunus_persica Prupe.7G100900_v2.0.a1
pyrus_communis pycom12g02940 pycom14g02880
rosa_chinensis RchiOBHm_Chr3g0474871
rosa_laevigata RLG00000023886
rosa_multiflora Rmu_sc0011900.1_g000011
rosa_roxburghii Rroxscaffold_6G00406780
rosa_rugosa Rorug03G0145100
rosa_samantha Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100
rosa_wichuraiana Rw3G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 709, 730
Acc36I ACCTGC 3 cut(s) 426, 709, 730
AccB1I GGYRCC 1 cut(s) 263
AccBSI CCGCTC 3 cut(s) 159, 384, 600
AccII CGCG 5 cut(s) 489, 546, 614, 616, 623
AccIII TCCGGA 1 cut(s) 408
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 337
AcvI CACGTG 3 cut(s) 207, 396, 483
AcyI GRCGYC 3 cut(s) 264, 446, 653
AdeI CACNNNGTG 1 cut(s) 933
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 184, 571, 742
AflIII ACRYGT 2 cut(s) 480, 482
AgsI TTSAA 2 cut(s) 89, 769
AjiI CACGTC 3 cut(s) 230, 436, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 2 cut(s) 154, 516
AluI AGCT 2 cut(s) 154, 516
Alw21I GWGCWC 2 cut(s) 401, 612
Alw26I GTCTC 4 cut(s) 236, 362, 368, 858
Alw44I GTGCAC 1 cut(s) 608
AlwI GGATC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 559
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 5 cut(s) 115, 186, 209, 474, 637
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 2 cut(s) 317, 583
AspLEI GCGC 5 cut(s) 266, 546, 548, 616, 695
AspS9I GGNCC 4 cut(s) 116, 186, 210, 424
AsuC2I CCSGG 3 cut(s) 461, 533, 636
AsuHPI GGTGA 6 cut(s) 94, 463, 614, 694, 733, 742
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 263
BbrPI CACGTG 3 cut(s) 207, 396, 483
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 401, 612
BbvI GCAGC 2 cut(s) 329, 595
BccI CCATC 2 cut(s) 81, 381
BceAI ACGGC 7 cut(s) 53, 130, 277, 388, 557, 585, 666
BcnI CCSGG 3 cut(s) 461, 533, 636
BcoDI GTCTC 4 cut(s) 236, 362, 368, 858
BfmI CTRYAG 1 cut(s) 737
BfoI RGCGCY 2 cut(s) 267, 696
BfuAI ACCTGC 3 cut(s) 426, 709, 730
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 6 cut(s) 135, 318, 321, 584, 587, 691
BlpI GCTNAGC 2 cut(s) 512, 596
BlsI GCNGC 6 cut(s) 136, 319, 322, 585, 588, 692
Bme1390I CCNGG 3 cut(s) 461, 533, 636
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 559
BmgBI CACGTC 3 cut(s) 230, 436, 687
BmgT120I GGNCC 4 cut(s) 116, 186, 210, 424
BmiI GGNNCC 4 cut(s) 118, 265, 426, 441
BmrFI CCNGG 3 cut(s) 461, 533, 636
BmsI GCATC 1 cut(s) 189
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 51
Bpu1102I GCTNAGC 2 cut(s) 512, 596
BpuMI CCSGG 3 cut(s) 461, 533, 636
BsaAI YACGTR 3 cut(s) 207, 396, 483
BsaBI GATNNNNATC 1 cut(s) 524
BsaHI GRCGYC 3 cut(s) 264, 446, 653
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 571, 742
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 596
Bse8I GATNNNNATC 1 cut(s) 524
BseAI TCCGGA 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 73, 96, 392
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 3 cut(s) 184, 571, 742
BseMII CTCAG 3 cut(s) 497, 503, 587
BseNI ACTGG 1 cut(s) 596
BsePI GCGCGC 1 cut(s) 544
BseRI GAGGAG 4 cut(s) 40, 847, 857, 868
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 2 cut(s) 329, 595
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 3 cut(s) 124, 602, 686
Bsh1236I CGCG 5 cut(s) 489, 546, 614, 616, 623
BshFI GGCC 5 cut(s) 117, 188, 211, 476, 639
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 401, 612
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 5 cut(s) 409, 449, 461, 533, 636
BslFI GGGAC 3 cut(s) 552, 661, 931
BslI CCNNNNNNNGG 3 cut(s) 184, 571, 742
BsmAI GTCTC 4 cut(s) 236, 362, 368, 858
BsmBI CGTCTC 2 cut(s) 236, 362
BsmFI GGGAC 3 cut(s) 552, 661, 931
BsmI GAATGC 1 cut(s) 765
BsnI GGCC 5 cut(s) 117, 188, 211, 476, 639
BsoBI CYCGRG 1 cut(s) 559
Bsp1286I GDGCHC 2 cut(s) 401, 612
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 5 cut(s) 60, 333, 490, 525, 675
Bsp1720I GCTNAGC 2 cut(s) 512, 596
Bsp68I TCGCGA 1 cut(s) 489
BspANI GGCC 5 cut(s) 117, 188, 211, 476, 639
BspCNI CTCAG 3 cut(s) 498, 504, 588
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 5 cut(s) 489, 546, 614, 616, 623
BspLI GGNNCC 4 cut(s) 118, 265, 426, 441
BspMAI CTGCAG 1 cut(s) 741
BspMI ACCTGC 3 cut(s) 426, 709, 730
BspPI GGATC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 263
BsrBI CCGCTC 3 cut(s) 159, 384, 600
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 596
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 429
BssHII GCGCGC 1 cut(s) 544
BssMI GATC 5 cut(s) 60, 333, 490, 525, 675
BssNI GRCGYC 3 cut(s) 264, 446, 653
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 37, 379, 782
Bst6I CTCTTC 1 cut(s) 875
BstACI GRCGYC 3 cut(s) 264, 446, 653
BstBAI YACGTR 3 cut(s) 207, 396, 483
BstC8I GCNNGC 6 cut(s) 7, 139, 401, 546, 612, 737
BstDEI CTNAG 4 cut(s) 307, 506, 512, 596
BstF5I GGATG 3 cut(s) 73, 96, 392
BstFNI CGCG 5 cut(s) 489, 546, 614, 616, 623
BstH2I RGCGCY 2 cut(s) 267, 696
BstHHI GCGC 5 cut(s) 266, 546, 548, 616, 695
BstKTI GATC 5 cut(s) 63, 336, 493, 528, 678
BstMAI GTCTC 4 cut(s) 236, 362, 368, 858
BstMBI GATC 5 cut(s) 60, 333, 490, 525, 675
BstMWI GCNNNNNNNGC 5 cut(s) 114, 134, 326, 592, 620
BstPAI GACNNNNGTC 1 cut(s) 483
BstSCI CCNGG 3 cut(s) 459, 531, 634
BstSFI CTRYAG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 5 cut(s) 489, 546, 614, 616, 623
BstV1I GCAGC 2 cut(s) 329, 595
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 436
BsuRI GGCC 5 cut(s) 117, 188, 211, 476, 639
BtrI CACGTC 3 cut(s) 230, 436, 687
BtsCI GGATG 3 cut(s) 73, 96, 392
BtsI GCAGTG 1 cut(s) 674
BtsIMutI CAGTG 2 cut(s) 589, 674
BtuMI TCGCGA 1 cut(s) 489
BveI ACCTGC 3 cut(s) 426, 709, 730
Cac8I GCNNGC 6 cut(s) 7, 139, 401, 546, 612, 737
CfoI GCGC 5 cut(s) 266, 546, 548, 616, 695
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 4 cut(s) 116, 186, 210, 424
CseI GACGC 3 cut(s) 454, 612, 642
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 751
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 307, 506, 512, 596
DinI GGCGCC 1 cut(s) 265
DpnI GATC 5 cut(s) 62, 335, 492, 527, 677
DpnII GATC 5 cut(s) 60, 333, 490, 525, 675
DraIII CACNNNGTG 1 cut(s) 933
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
EciI GGCGGA 3 cut(s) 55, 121, 224
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 337
Eco72I CACGTG 3 cut(s) 207, 396, 483
Eco88I CYCGRG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 765
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 2 cut(s) 236, 362
FaeI CATG 1 cut(s) 754
FaiI YATR 3 cut(s) 83, 551, 752
FaqI GGGAC 3 cut(s) 552, 661, 931
FatI CATG 1 cut(s) 750
FauI CCCGC 4 cut(s) 113, 300, 334, 665
Fnu4HI GCNGC 6 cut(s) 135, 318, 321, 584, 587, 691
FokI GGATG 3 cut(s) 60, 83, 399
Fsp4HI GCNGC 6 cut(s) 135, 318, 321, 584, 587, 691
GlaI GCGC 5 cut(s) 265, 545, 547, 615, 694
GluI GCNGC 6 cut(s) 135, 318, 321, 584, 587, 691
GsaI CCCAGC 1 cut(s) 699
HaeII RGCGCY 2 cut(s) 267, 696
HaeIII GGCC 5 cut(s) 117, 188, 211, 476, 639
HapII CCGG 5 cut(s) 409, 449, 461, 533, 636
HgaI GACGC 3 cut(s) 454, 612, 642
HhaI GCGC 5 cut(s) 266, 546, 548, 616, 695
Hin1I GRCGYC 3 cut(s) 264, 446, 653
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 5 cut(s) 264, 544, 546, 614, 693
HinP1I GCGC 5 cut(s) 264, 544, 546, 614, 693
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 5 cut(s) 47, 284, 311, 520, 628
HpaII CCGG 5 cut(s) 409, 449, 461, 533, 636
HphI GGTGA 6 cut(s) 94, 463, 614, 694, 733, 742
Hpy166II GTNNAC 3 cut(s) 30, 393, 610
Hpy188I TCNGA 6 cut(s) 172, 283, 444, 525, 658, 703
Hpy188III TCNNGA 5 cut(s) 77, 340, 409, 488, 559
Hpy8I GTNNAC 3 cut(s) 30, 393, 610
Hpy99I CGWCG 6 cut(s) 41, 116, 263, 448, 628, 658
HpyAV CCTTC 8 cut(s) 157, 262, 277, 298, 769, 843, 886, 908
HpyCH4III ACNGT 3 cut(s) 37, 379, 782
HpyCH4IV ACGT 6 cut(s) 206, 229, 395, 435, 482, 686
HpyCH4V TGCA 9 cut(s) 141, 583, 610, 667, 718, 739, 763, 796, 987
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 134, 326, 592, 620
HpyF3I CTNAG 4 cut(s) 307, 506, 512, 596
HpySE526I ACGT 6 cut(s) 206, 229, 395, 435, 482, 686
Hsp92I GRCGYC 3 cut(s) 264, 446, 653
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 5 cut(s) 264, 544, 546, 614, 693
KasI GGCGCC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 408
Kzo9I GATC 5 cut(s) 60, 333, 490, 525, 675
LmnI GCTCC 3 cut(s) 14, 159, 164
Lsp1109I GCAGC 2 cut(s) 329, 595
LweI GCATC 1 cut(s) 189
MaeII ACGT 6 cut(s) 206, 229, 395, 435, 482, 686
MaeIII GTNAC 2 cut(s) 682, 937
MalI GATC 5 cut(s) 62, 335, 492, 527, 677
MbiI CCGCTC 3 cut(s) 159, 384, 600
MboI GATC 5 cut(s) 60, 333, 490, 525, 675
MboII GAAGA 7 cut(s) 56, 268, 343, 623, 892, 910, 913
MhlI GDGCHC 2 cut(s) 401, 612
MluCI AATT 2 cut(s) 84, 789
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 3 cut(s) 41, 278, 305
MmeI TCCRAC 6 cut(s) 195, 306, 467, 636, 681, 786
Mph1103I ATGCAT 1 cut(s) 765
MroI TCCGGA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 5 cut(s) 409, 449, 461, 533, 636
MspR9I CCNGG 3 cut(s) 461, 533, 636
Mva1269I GAATGC 1 cut(s) 765
MvnI CGCG 5 cut(s) 489, 546, 614, 616, 623
MwoI GCNNNNNNNGC 5 cut(s) 114, 134, 326, 592, 620
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 3 cut(s) 461, 533, 636
NdeII GATC 5 cut(s) 60, 333, 490, 525, 675
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 4 cut(s) 118, 265, 426, 441
NmuCI GTSAC 2 cut(s) 682, 937
NruI TCGCGA 1 cut(s) 489
NsiI ATGCAT 1 cut(s) 765
PaeR7I CTCGAG 1 cut(s) 559
PaqCI CACCTGC 2 cut(s) 709, 730
PauI GCGCGC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 338, 401
PctI GAATGC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 520, 628
PflFI GACNNNGTC 1 cut(s) 652
PkrI GCNGC 6 cut(s) 136, 319, 322, 585, 588, 692
PleI GAGTC 3 cut(s) 41, 278, 305
PluTI GGCGCC 1 cut(s) 267
PmaCI CACGTG 3 cut(s) 207, 396, 483
PmlI CACGTG 3 cut(s) 207, 396, 483
PpsI GAGTC 3 cut(s) 41, 278, 305
Ppu21I YACGTR 3 cut(s) 207, 396, 483
PshAI GACNNNNGTC 1 cut(s) 483
PspCI CACGTG 3 cut(s) 207, 396, 483
PspFI CCCAGC 1 cut(s) 695
PspN4I GGNNCC 4 cut(s) 118, 265, 426, 441
PspPI GGNCC 4 cut(s) 116, 186, 210, 424
PstI CTGCAG 1 cut(s) 741
PsyI GACNNNGTC 1 cut(s) 652
PteI GCGCGC 1 cut(s) 544
RruI TCGCGA 1 cut(s) 489
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SatI GCNGC 6 cut(s) 135, 318, 321, 584, 587, 691
Sau3AI GATC 5 cut(s) 60, 333, 490, 525, 675
Sau96I GGNCC 4 cut(s) 116, 186, 210, 424
SbfI CCTGCAGG 1 cut(s) 741
SchI GAGTC 3 cut(s) 41, 278, 305
ScrFI CCNGG 3 cut(s) 461, 533, 636
SdaI CCTGCAGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 401, 612
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 737
SfoI GGCGCC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 559
SgrAI CRCCGGYG 1 cut(s) 448
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse8387I CCTGCAGG 1 cut(s) 741
Sse9I AATT 2 cut(s) 84, 789
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 459, 531, 634
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 37, 379, 782
TaiI ACGT 6 cut(s) 209, 232, 398, 438, 485, 689
TaqI TCGA 6 cut(s) 39, 59, 111, 528, 560, 626
TasI AATT 2 cut(s) 84, 789
TauI GCSGC 4 cut(s) 137, 323, 589, 693
TfiI GAWTC 2 cut(s) 520, 628
TscAI CASTG 2 cut(s) 596, 674
TseFI GTSAC 2 cut(s) 682, 937
TseI GCWGC 2 cut(s) 317, 583
Tsp45I GTSAC 2 cut(s) 682, 937
TspDTI ATGAA 2 cut(s) 57, 566
TspGWI ACGGA 4 cut(s) 15, 386, 771, 876
TspRI CASTG 2 cut(s) 596, 674
Tth111I GACNNNGTC 1 cut(s) 652
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.