f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36090 |
| fragaria_vesca | FvH4_6g19530 |
| malus_domestica | MD12G1031600.v1.1 MD14G1031900.v1.1 |
| prunus_persica | Prupe.7G100900_v2.0.a1 |
| pyrus_communis | pycom12g02940 pycom14g02880 |
| rosa_chinensis | RchiOBHm_Chr3g0474871 |
| rosa_laevigata | RLG00000023886 |
| rosa_multiflora | Rmu_sc0011900.1_g000011 |
| rosa_roxburghii | Rroxscaffold_6G00406780 |
| rosa_rugosa | Rorug03G0145100 |
| rosa_samantha | Rh3AG194400 Rh3BG224300 Rh3CG219200 Rh3DG220100 |
| rosa_wichuraiana | Rw3G017700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 901, 922 |
| Acc36I | ACCTGC | 3 cut(s) | 621, 901, 922 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AccBSI | CCGCTC | 2 cut(s) | 436, 795 |
| AccII | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| AccIII | TCCGGA | 1 cut(s) | 603 |
| AclWI | GGATC | 1 cut(s) | 878 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcuI | CTGAAG | 2 cut(s) | 28, 84 |
| AcvI | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| AcyI | GRCGYC | 1 cut(s) | 848 |
| AdeI | CACNNNGTG | 1 cut(s) | 1128 |
| AfaI | GTAC | 1 cut(s) | 653 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 12, 579, 711, 766 |
| AflIII | ACRYGT | 3 cut(s) | 370, 675, 677 |
| AgsI | TTSAA | 3 cut(s) | 11, 363, 961 |
| AjiI | CACGTC | 1 cut(s) | 631 |
| AluBI | AGCT | 6 cut(s) | 48, 541, 711, 907, 927, 1099 |
| AluI | AGCT | 6 cut(s) | 48, 541, 711, 907, 927, 1099 |
| Alw21I | GWGCWC | 4 cut(s) | 140, 596, 807, 858 |
| Alw26I | GTCTC | 3 cut(s) | 58, 557, 563 |
| Alw44I | GTGCAC | 1 cut(s) | 803 |
| AlwI | GGATC | 1 cut(s) | 878 |
| Ama87I | CYCGRG | 2 cut(s) | 689, 830 |
| Aor13HI | TCCGGA | 1 cut(s) | 603 |
| AoxI | GGCC | 4 cut(s) | 256, 350, 661, 733 |
| ApaLI | GTGCAC | 1 cut(s) | 803 |
| ApeKI | GCWGC | 2 cut(s) | 778, 907 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 32, 64 |
| AseI | ATTAAT | 1 cut(s) | 506 |
| AspLEI | GCGC | 2 cut(s) | 475, 783 |
| AspS9I | GGNCC | 6 cut(s) | 257, 351, 490, 619, 634, 661 |
| AsuC2I | CCSGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| AsuHPI | GGTGA | 4 cut(s) | 235, 433, 925, 934 |
| AvaI | CYCGRG | 2 cut(s) | 689, 830 |
| AvaII | GGWCC | 3 cut(s) | 490, 619, 634 |
| BaeGI | GKGCMC | 2 cut(s) | 112, 807 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BauI | CACGAG | 1 cut(s) | 754 |
| BbrPI | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| Bbv12I | GWGCWC | 4 cut(s) | 140, 596, 807, 858 |
| BbvCI | CCTCAGC | 2 cut(s) | 707, 1100 |
| BbvI | GCAGC | 2 cut(s) | 790, 894 |
| BccI | CCATC | 4 cut(s) | 169, 175, 395, 941 |
| BceAI | ACGGC | 2 cut(s) | 271, 583 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 541, 575 |
| BcnI | CCSGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| BcoDI | GTCTC | 3 cut(s) | 58, 557, 563 |
| BfaI | CTAG | 1 cut(s) | 449 |
| BfmI | CTRYAG | 1 cut(s) | 908 |
| BfoI | RGCGCY | 1 cut(s) | 784 |
| BfuAI | ACCTGC | 3 cut(s) | 621, 901, 922 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 255 |
| BisI | GCNGC | 4 cut(s) | 276, 459, 779, 908 |
| BlpI | GCTNAGC | 1 cut(s) | 791 |
| BlsI | GCNGC | 4 cut(s) | 277, 460, 780, 909 |
| Bme1390I | CCNGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| Bme18I | GGWCC | 3 cut(s) | 490, 619, 634 |
| BmeT110I | CYCGRG | 2 cut(s) | 689, 830 |
| BmgBI | CACGTC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 6 cut(s) | 257, 351, 490, 619, 634, 661 |
| BmiI | GGNNCC | 5 cut(s) | 259, 406, 587, 621, 636 |
| BmrFI | CCNGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| BoxI | GACNNNNGTC | 1 cut(s) | 678 |
| Bpu10I | CCTNAGC | 2 cut(s) | 707, 1100 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 791 |
| BpuMI | CCSGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| BsaAI | YACGTR | 5 cut(s) | 371, 678, 808, 859, 882 |
| BsaBI | GATNNNNATC | 1 cut(s) | 719 |
| BsaHI | GRCGYC | 1 cut(s) | 848 |
| BsaI | GGTCTC | 1 cut(s) | 563 |
| BsaJI | CCNNGG | 4 cut(s) | 624, 688, 830, 831 |
| BsaWI | WCCGGW | 2 cut(s) | 588, 603 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 827, 857, 958, 988 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 12, 579, 711, 766 |
| Bse118I | RCCGGY | 1 cut(s) | 735 |
| Bse1I | ACTGG | 1 cut(s) | 791 |
| Bse8I | GATNNNNATC | 1 cut(s) | 719 |
| BseAI | TCCGGA | 1 cut(s) | 603 |
| BseDI | CCNNGG | 4 cut(s) | 624, 688, 830, 831 |
| BseGI | GGATG | 5 cut(s) | 167, 237, 512, 700, 952 |
| BseJI | GATNNNNATC | 1 cut(s) | 719 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 12, 579, 711, 766 |
| BseMII | CTCAG | 4 cut(s) | 539, 721, 782, 1091 |
| BseNI | ACTGG | 1 cut(s) | 791 |
| BseRI | GAGGAG | 8 cut(s) | 130, 133, 136, 139, 277, 428, 1036, 1052 |
| BseSI | GKGCMC | 2 cut(s) | 112, 807 |
| BseX3I | CGGCCG | 1 cut(s) | 733 |
| BseXI | GCAGC | 2 cut(s) | 790, 894 |
| BsgI | GTGCAG | 2 cut(s) | 797, 881 |
| Bsh1236I | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| Bsh1285I | CGRYCG | 2 cut(s) | 732, 736 |
| BshFI | GGCC | 4 cut(s) | 258, 352, 663, 735 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BsiEI | CGRYCG | 2 cut(s) | 732, 736 |
| BsiHKAI | GWGCWC | 4 cut(s) | 140, 596, 807, 858 |
| BsiHKCI | CYCGRG | 2 cut(s) | 689, 830 |
| BsiSI | CCGG | 7 cut(s) | 579, 589, 604, 656, 664, 736, 831 |
| BslFI | GGGAC | 3 cut(s) | 341, 620, 1126 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 12, 579, 711, 766 |
| BsmAI | GTCTC | 3 cut(s) | 58, 557, 563 |
| BsmBI | CGTCTC | 1 cut(s) | 557 |
| BsmFI | GGGAC | 3 cut(s) | 341, 620, 1126 |
| BsmI | GAATGC | 1 cut(s) | 957 |
| BsnI | GGCC | 4 cut(s) | 258, 352, 663, 735 |
| Bso31I | GGTCTC | 1 cut(s) | 563 |
| BsoBI | CYCGRG | 2 cut(s) | 689, 830 |
| Bsp1286I | GDGCHC | 5 cut(s) | 112, 140, 596, 807, 858 |
| Bsp13I | TCCGGA | 1 cut(s) | 603 |
| Bsp143I | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 791 |
| Bsp68I | TCGCGA | 1 cut(s) | 684 |
| BspANI | GGCC | 4 cut(s) | 258, 352, 663, 735 |
| BspCNI | CTCAG | 4 cut(s) | 540, 720, 783, 1092 |
| BspEI | TCCGGA | 1 cut(s) | 603 |
| BspFNI | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| BspLI | GGNNCC | 5 cut(s) | 259, 406, 587, 621, 636 |
| BspMAI | CTGCAG | 1 cut(s) | 912 |
| BspMI | ACCTGC | 3 cut(s) | 621, 901, 922 |
| BspPI | GGATC | 1 cut(s) | 878 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BspTNI | GGTCTC | 1 cut(s) | 563 |
| BsrBI | CCGCTC | 2 cut(s) | 436, 795 |
| BsrFI | RCCGGY | 1 cut(s) | 735 |
| BsrI | ACTGG | 1 cut(s) | 791 |
| BssAI | RCCGGY | 1 cut(s) | 735 |
| BssECI | CCNNGG | 4 cut(s) | 624, 688, 830, 831 |
| BssMI | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| BssNI | GRCGYC | 1 cut(s) | 848 |
| BssSI | CACGAG | 1 cut(s) | 754 |
| BssT1I | CCWWGG | 1 cut(s) | 624 |
| Bst2BI | CACGAG | 1 cut(s) | 754 |
| Bst4CI | ACNGT | 4 cut(s) | 7, 178, 211, 574 |
| Bst6I | CTCTTC | 3 cut(s) | 103, 1029, 1053 |
| BstACI | GRCGYC | 1 cut(s) | 848 |
| BstBAI | YACGTR | 5 cut(s) | 371, 678, 808, 859, 882 |
| BstC8I | GCNNGC | 7 cut(s) | 136, 267, 596, 661, 737, 741, 929 |
| BstDEI | CTNAG | 4 cut(s) | 548, 707, 791, 1100 |
| BstF5I | GGATG | 5 cut(s) | 167, 237, 512, 700, 952 |
| BstFNI | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| BstH2I | RGCGCY | 1 cut(s) | 784 |
| BstHHI | GCGC | 2 cut(s) | 475, 783 |
| BstKTI | GATC | 6 cut(s) | 487, 700, 723, 732, 747, 873 |
| BstMAI | GTCTC | 3 cut(s) | 58, 557, 563 |
| BstMBI | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| BstMCI | CGRYCG | 2 cut(s) | 732, 736 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 255, 275, 787 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 678 |
| BstSCI | CCNGG | 5 cut(s) | 578, 654, 663, 829, 830 |
| BstSFI | CTRYAG | 1 cut(s) | 908 |
| BstSLI | GKGCMC | 2 cut(s) | 112, 807 |
| BstUI | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| BstV1I | GCAGC | 2 cut(s) | 790, 894 |
| BstX2I | RGATCY | 1 cut(s) | 870 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 631 |
| BstYI | RGATCY | 1 cut(s) | 870 |
| BstZI | CGGCCG | 1 cut(s) | 733 |
| BsuRI | GGCC | 4 cut(s) | 258, 352, 663, 735 |
| BtgZI | GCGATG | 1 cut(s) | 147 |
| BtrI | CACGTC | 1 cut(s) | 631 |
| BtsCI | GGATG | 5 cut(s) | 167, 237, 512, 700, 952 |
| BtsI | GCAGTG | 1 cut(s) | 869 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 784, 869 |
| BtuMI | TCGCGA | 1 cut(s) | 684 |
| BveI | ACCTGC | 3 cut(s) | 621, 901, 922 |
| Cac8I | GCNNGC | 7 cut(s) | 136, 267, 596, 661, 737, 741, 929 |
| CfoI | GCGC | 2 cut(s) | 475, 783 |
| Cfr10I | RCCGGY | 1 cut(s) | 735 |
| Cfr13I | GGNCC | 6 cut(s) | 257, 351, 490, 619, 634, 661 |
| Cfr9I | CCCGGG | 1 cut(s) | 830 |
| CseI | GACGC | 3 cut(s) | 186, 807, 837 |
| Csp6I | GTAC | 1 cut(s) | 652 |
| CviAII | CATG | 3 cut(s) | 130, 348, 943 |
| CviQI | GTAC | 1 cut(s) | 652 |
| DdeI | CTNAG | 4 cut(s) | 548, 707, 791, 1100 |
| DpnI | GATC | 6 cut(s) | 486, 699, 722, 731, 746, 872 |
| DpnII | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| DraIII | CACNNNGTG | 1 cut(s) | 1128 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| EagI | CGGCCG | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 3 cut(s) | 103, 1029, 1053 |
| EarI | CTCTTC | 3 cut(s) | 103, 1029, 1053 |
| EciI | GGCGGA | 2 cut(s) | 262, 365 |
| EclXI | CGGCCG | 1 cut(s) | 733 |
| Eco130I | CCWWGG | 1 cut(s) | 624 |
| Eco31I | GGTCTC | 1 cut(s) | 563 |
| Eco32I | GATATC | 1 cut(s) | 523 |
| Eco47I | GGWCC | 3 cut(s) | 490, 619, 634 |
| Eco52I | CGGCCG | 1 cut(s) | 733 |
| Eco57I | CTGAAG | 2 cut(s) | 28, 84 |
| Eco72I | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| Eco88I | CYCGRG | 2 cut(s) | 689, 830 |
| EcoRV | GATATC | 1 cut(s) | 523 |
| EcoT14I | CCWWGG | 1 cut(s) | 624 |
| EcoT22I | ATGCAT | 1 cut(s) | 957 |
| ErhI | CCWWGG | 1 cut(s) | 624 |
| Esp3I | CGTCTC | 1 cut(s) | 557 |
| FaeI | CATG | 3 cut(s) | 133, 351, 946 |
| FaiI | YATR | 8 cut(s) | 72, 74, 131, 216, 224, 349, 944, 1180 |
| FaqI | GGGAC | 3 cut(s) | 341, 620, 1126 |
| FatI | CATG | 3 cut(s) | 129, 347, 942 |
| FauI | CCCGC | 8 cut(s) | 202, 254, 441, 652, 732, 788, 860, 878 |
| Fnu4HI | GCNGC | 4 cut(s) | 276, 459, 779, 908 |
| FokI | GGATG | 5 cut(s) | 154, 224, 499, 707, 959 |
| Fsp4HI | GCNGC | 4 cut(s) | 276, 459, 779, 908 |
| FspBI | CTAG | 1 cut(s) | 449 |
| GlaI | GCGC | 2 cut(s) | 474, 782 |
| GluI | GCNGC | 4 cut(s) | 276, 459, 779, 908 |
| HaeII | RGCGCY | 1 cut(s) | 784 |
| HaeIII | GGCC | 4 cut(s) | 258, 352, 663, 735 |
| HapII | CCGG | 7 cut(s) | 579, 589, 604, 656, 664, 736, 831 |
| HgaI | GACGC | 3 cut(s) | 186, 807, 837 |
| HhaI | GCGC | 2 cut(s) | 475, 783 |
| Hin1I | GRCGYC | 1 cut(s) | 848 |
| Hin1II | CATG | 3 cut(s) | 133, 351, 946 |
| Hin6I | GCGC | 2 cut(s) | 473, 781 |
| HinP1I | GCGC | 2 cut(s) | 473, 781 |
| HinfI | GANTC | 7 cut(s) | 34, 425, 478, 668, 715, 823, 890 |
| HpaII | CCGG | 7 cut(s) | 579, 589, 604, 656, 664, 736, 831 |
| HphI | GGTGA | 4 cut(s) | 235, 433, 925, 934 |
| Hpy166II | GTNNAC | 1 cut(s) | 805 |
| Hpy188I | TCNGA | 7 cut(s) | 424, 549, 673, 702, 720, 853, 895 |
| Hpy188III | TCNNGA | 8 cut(s) | 38, 229, 482, 488, 562, 604, 683, 754 |
| Hpy8I | GTNNAC | 1 cut(s) | 805 |
| Hpy99I | CGWCG | 6 cut(s) | 182, 257, 521, 563, 823, 853 |
| HpyAV | CCTTC | 6 cut(s) | 5, 418, 424, 439, 832, 1103 |
| HpyCH4III | ACNGT | 4 cut(s) | 7, 178, 211, 574 |
| HpyCH4IV | ACGT | 7 cut(s) | 370, 392, 630, 677, 807, 858, 881 |
| HpyCH4V | TGCA | 8 cut(s) | 778, 805, 862, 910, 931, 955, 988, 1182 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 255, 275, 787 |
| HpyF3I | CTNAG | 4 cut(s) | 548, 707, 791, 1100 |
| HpySE526I | ACGT | 7 cut(s) | 370, 392, 630, 677, 807, 858, 881 |
| Hsp92I | GRCGYC | 1 cut(s) | 848 |
| Hsp92II | CATG | 3 cut(s) | 133, 351, 946 |
| HspAI | GCGC | 2 cut(s) | 473, 781 |
| Kpn2I | TCCGGA | 1 cut(s) | 603 |
| KroI | GCCGGC | 1 cut(s) | 735 |
| KroNI | GCCGGC | 1 cut(s) | 737 |
| Kzo9I | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| LmnI | GCTCC | 5 cut(s) | 143, 441, 853, 904, 1023 |
| Lsp1109I | GCAGC | 2 cut(s) | 790, 894 |
| MaeI | CTAG | 1 cut(s) | 449 |
| MaeII | ACGT | 7 cut(s) | 370, 392, 630, 677, 807, 858, 881 |
| MaeIII | GTNAC | 3 cut(s) | 123, 574, 877 |
| MalI | GATC | 6 cut(s) | 486, 699, 722, 731, 746, 872 |
| MbiI | CCGCTC | 2 cut(s) | 436, 795 |
| MboI | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| MboII | GAAGA | 8 cut(s) | 90, 818, 1026, 1046, 1056, 1070, 1087, 1105 |
| MflI | RGATCY | 1 cut(s) | 870 |
| MhlI | GDGCHC | 5 cut(s) | 112, 140, 596, 807, 858 |
| MluCI | AATT | 2 cut(s) | 503, 981 |
| MlyI | GAGTC | 2 cut(s) | 419, 899 |
| MmeI | TCCRAC | 5 cut(s) | 447, 696, 831, 873, 978 |
| Mph1103I | ATGCAT | 1 cut(s) | 957 |
| MroI | TCCGGA | 1 cut(s) | 603 |
| MroNI | GCCGGC | 1 cut(s) | 735 |
| MseI | TTAA | 1 cut(s) | 506 |
| MspA1I | CMGCKG | 1 cut(s) | 711 |
| MspI | CCGG | 7 cut(s) | 579, 589, 604, 656, 664, 736, 831 |
| MspR9I | CCNGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| Mva1269I | GAATGC | 1 cut(s) | 957 |
| MvnI | CGCG | 5 cut(s) | 197, 473, 534, 684, 818 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 255, 275, 787 |
| NaeI | GCCGGC | 1 cut(s) | 737 |
| NciI | CCSGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| NdeII | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| NgoMIV | GCCGGC | 1 cut(s) | 735 |
| NlaIII | CATG | 3 cut(s) | 133, 351, 946 |
| NlaIV | GGNNCC | 5 cut(s) | 259, 406, 587, 621, 636 |
| NmuCI | GTSAC | 3 cut(s) | 123, 574, 877 |
| NruI | TCGCGA | 1 cut(s) | 684 |
| NsiI | ATGCAT | 1 cut(s) | 957 |
| PaqCI | CACCTGC | 2 cut(s) | 901, 922 |
| PctI | GAATGC | 1 cut(s) | 957 |
| PdiI | GCCGGC | 1 cut(s) | 737 |
| PfeI | GAWTC | 5 cut(s) | 34, 478, 668, 715, 823 |
| PflFI | GACNNNGTC | 1 cut(s) | 632 |
| PkrI | GCNGC | 4 cut(s) | 277, 460, 780, 909 |
| Ple19I | CGATCG | 1 cut(s) | 732 |
| PleI | GAGTC | 2 cut(s) | 419, 898 |
| PmaCI | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| PmlI | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| PpsI | GAGTC | 2 cut(s) | 419, 898 |
| Ppu21I | YACGTR | 5 cut(s) | 371, 678, 808, 859, 882 |
| PshAI | GACNNNNGTC | 1 cut(s) | 678 |
| PshBI | ATTAAT | 1 cut(s) | 506 |
| PspCI | CACGTG | 5 cut(s) | 371, 678, 808, 859, 882 |
| PspN4I | GGNNCC | 5 cut(s) | 259, 406, 587, 621, 636 |
| PspPI | GGNCC | 6 cut(s) | 257, 351, 490, 619, 634, 661 |
| PstI | CTGCAG | 1 cut(s) | 912 |
| PsuI | RGATCY | 1 cut(s) | 870 |
| PsyI | GACNNNGTC | 1 cut(s) | 632 |
| PvuI | CGATCG | 1 cut(s) | 732 |
| PvuII | CAGCTG | 1 cut(s) | 711 |
| RruI | TCGCGA | 1 cut(s) | 684 |
| RsaI | GTAC | 1 cut(s) | 653 |
| RsaNI | GTAC | 1 cut(s) | 652 |
| SaqAI | TTAA | 1 cut(s) | 506 |
| SatI | GCNGC | 4 cut(s) | 276, 459, 779, 908 |
| Sau3AI | GATC | 6 cut(s) | 484, 697, 720, 729, 744, 870 |
| Sau96I | GGNCC | 6 cut(s) | 257, 351, 490, 619, 634, 661 |
| SchI | GAGTC | 2 cut(s) | 419, 899 |
| ScrFI | CCNGG | 5 cut(s) | 580, 656, 665, 831, 832 |
| SduI | GDGCHC | 5 cut(s) | 112, 140, 596, 807, 858 |
| SfcI | CTRYAG | 1 cut(s) | 908 |
| SinI | GGWCC | 3 cut(s) | 490, 619, 634 |
| SmaI | CCCGGG | 1 cut(s) | 832 |
| Sse9I | AATT | 2 cut(s) | 503, 981 |
| SspMI | CTAG | 1 cut(s) | 449 |
| StyD4I | CCNGG | 5 cut(s) | 578, 654, 663, 829, 830 |
| StyI | CCWWGG | 1 cut(s) | 624 |
| TaaI | ACNGT | 4 cut(s) | 7, 178, 211, 574 |
| TaiI | ACGT | 7 cut(s) | 373, 395, 633, 680, 810, 861, 884 |
| TaqI | TCGA | 7 cut(s) | 32, 180, 252, 519, 561, 723, 821 |
| TasI | AATT | 2 cut(s) | 503, 981 |
| TauI | GCSGC | 2 cut(s) | 278, 461 |
| TfiI | GAWTC | 5 cut(s) | 34, 478, 668, 715, 823 |
| Tru1I | TTAA | 1 cut(s) | 506 |
| Tru9I | TTAA | 1 cut(s) | 506 |
| TscAI | CASTG | 3 cut(s) | 108, 791, 869 |
| TseFI | GTSAC | 3 cut(s) | 123, 574, 877 |
| TseI | GCWGC | 2 cut(s) | 778, 907 |
| Tsp45I | GTSAC | 3 cut(s) | 123, 574, 877 |
| TspDTI | ATGAA | 1 cut(s) | 198 |
| TspGWI | ACGGA | 3 cut(s) | 233, 505, 581 |
| TspMI | CCCGGG | 1 cut(s) | 830 |
| TspRI | CASTG | 3 cut(s) | 108, 791, 869 |
| Tth111I | GACNNNGTC | 1 cut(s) | 632 |
| VneI | GTGCAC | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 3 cut(s) | 490, 619, 634 |
| VspI | ATTAAT | 1 cut(s) | 506 |
| XmaI | CCCGGG | 1 cut(s) | 830 |
| XspI | CTAG | 1 cut(s) | 449 |
| Zsp2I | ATGCAT | 1 cut(s) | 957 |