AT2G36710

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011793
Physical Location & Seq
Reverse (-)
15389466 .. 15391257
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36710.1

Sequence Viewer

Length: 1224 bp
ATGCCCATCAAACCGGTTTTAACCACCCTAATAGCTCTTTTATCCATCATTCTTGCTCTCTACACGATCCAATTGCCATCCTCTAGATCTCTCTCTTCTATAGCTACAACTATCGGAGCATTAGCAAAATATTCAACATTTTTTGGACACAAACACCACCATCATCACCATCACCACCATCACCATCATCATTATCACCACCATGAACCAATAAAATGTTGTGAGAAATGGACGTCAAGGCTTAGACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGTTGTCCCTGATTTAAGCTCTTCCAAGACTCTCATCATCGTTAATTCGGGTTCTTATAGGGAAAAGGTTACGGTTAATGAAAACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACGACACAGCAAAATCCGCCGGAAACACTGCTGATAGCTTCTCCTTTGTAGTGTTTGCAGCTAACTTCACAGCTTACAACATTAGTTTCAAGAACAATGCACCAGAACCAGATCCTGGTGAAGCTGATGCACAAGCAGTAGCTCTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTGGATTCTATGGGGCTCAAGATACACTTCTAGATGATAAAGGAAGACATTTCTTCAAAGAGTGCTTCATTCAAGGGTCCATAGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATTGTACTATCAATTCAATAGCAAAGGGGAATACATCCGGAGTTACCGGATCTATCACAGCTCAAGGAAGACAATCAGAAGATGAACAGTCAGGATTCTCTTTTGTGAATTGTAAGATCGATGGCAGTGGGGAAATATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCAAATACTTACATGTCTGGAATCATTACTCCAGAAGGATGGAATAACTGGGGAGACTCGACCAAAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAGAGAGGGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATGTATCTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGCATACATCTAAAGACATTGGAGATGATCTTATAGGATTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

407

Amino Acids

44.97

Weight (kDa)

6.13

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 92 - 382 1.5e-68 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AccB7I CCANNNNNTGG 2 cut(s) 462, 581
AccIII TCCGGA 1 cut(s) 803
AciI CCGC 1 cut(s) 483
AclWI GGATC 3 cut(s) 61, 572, 823
AcuI CTGAAG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 772
AfiI CCNNNNNNNGG 2 cut(s) 462, 581
AflIII ACRYGT 1 cut(s) 957
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 8 cut(s) 135, 314, 431, 556, 620, 703, 719, 783
AjnI CCWGG 2 cut(s) 580, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
Alw26I GTCTC 3 cut(s) 618, 993, 1177
AlwI GGATC 3 cut(s) 61, 572, 823
AlwNI CAGNNNCTG 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 524, 632
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
AsiGI ACCGGT 1 cut(s) 13
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 723, 1049
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 7 cut(s) 158, 164, 173, 188, 596, 1033, 1154
AvaII GGWCC 2 cut(s) 723, 1049
BanII GRGCYC 1 cut(s) 664
BbsI GAAGAC 2 cut(s) 697, 841
BbvI GCAGC 2 cut(s) 536, 619
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 2 cut(s) 582, 764
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 3 cut(s) 618, 993, 1177
BfaI CTAG 2 cut(s) 84, 677
BfmI CTRYAG 2 cut(s) 99, 933
BfoI RGCGCY 1 cut(s) 321
BglII AGATCT 1 cut(s) 86
BisI GCNGC 2 cut(s) 525, 633
BlsI GCNGC 2 cut(s) 526, 634
Bme1390I CCNGG 3 cut(s) 582, 764, 1053
Bme18I GGWCC 2 cut(s) 723, 1049
BmgT120I GGNCC 2 cut(s) 723, 1049
BmiI GGNNCC 3 cut(s) 724, 925, 1154
BmrFI CCNGG 3 cut(s) 582, 764, 1053
BmrI ACTGGG 1 cut(s) 1003
BmsI GCATC 2 cut(s) 583, 1118
BmuI ACTGGG 1 cut(s) 1003
BpiI GAAGAC 2 cut(s) 697, 841
BpmI CTGGAG 1 cut(s) 960
BpuEI CTTGAG 2 cut(s) 648, 813
BpuMI CCSGG 1 cut(s) 1053
Bsa29I ATCGAT 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 618
BsaWI WCCGGW 3 cut(s) 13, 803, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 581
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 998
Bse3DI GCAATG 2 cut(s) 313, 751
BseAI TCCGGA 1 cut(s) 803
BseBI CCWGG 2 cut(s) 582, 764
BseCI ATCGAT 1 cut(s) 885
BseGI GGATG 4 cut(s) 77, 452, 800, 989
BseLI CCNNNNNNNGG 2 cut(s) 462, 581
BseMI GCAATG 2 cut(s) 313, 751
BseMII CTCAG 1 cut(s) 1167
BseNI ACTGG 1 cut(s) 998
BseXI GCAGC 2 cut(s) 536, 619
BshTI ACCGGT 1 cut(s) 13
BshVI ATCGAT 1 cut(s) 885
BsiSI CCGG 5 cut(s) 14, 486, 804, 813, 1052
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 462, 581
BsmAI GTCTC 3 cut(s) 618, 993, 1177
BsmFI GGGAC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 664
Bsp13I TCCGGA 1 cut(s) 803
Bsp143I GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
BspACI CCGC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 1168
BspDI ATCGAT 1 cut(s) 885
BspEI TCCGGA 1 cut(s) 803
BspLI GGNNCC 3 cut(s) 724, 925, 1154
BspPI GGATC 3 cut(s) 61, 572, 823
BspQI GCTCTTC 2 cut(s) 352, 907
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 2 cut(s) 313, 751
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 998
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 582, 764
Bst4CI ACNGT 5 cut(s) 277, 400, 855, 937, 1021
Bst6I CTCTTC 4 cut(s) 100, 352, 430, 907
BstACI GRCGYC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 242, 611, 1176
BstF5I GGATG 4 cut(s) 77, 452, 800, 989
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 7 cut(s) 69, 89, 580, 755, 818, 885, 1207
BstMAI GTCTC 3 cut(s) 618, 993, 1177
BstMBI GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
BstMWI GCNNNNNNNGC 2 cut(s) 482, 923
BstNI CCWGG 2 cut(s) 582, 764
BstNSI RCATGY 1 cut(s) 961
BstSCI CCNGG 3 cut(s) 580, 762, 1051
BstSFI CTRYAG 2 cut(s) 99, 933
BstV1I GCAGC 2 cut(s) 536, 619
BstV2I GAAGAC 2 cut(s) 697, 841
BstX2I RGATCY 3 cut(s) 86, 577, 815
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 3 cut(s) 86, 577, 815
Bsu15I ATCGAT 1 cut(s) 885
BsuTUI ATCGAT 1 cut(s) 885
BtsCI GGATG 4 cut(s) 77, 452, 800, 989
BtsI GCAGTG 2 cut(s) 492, 898
BtsIMutI CAGTG 2 cut(s) 492, 898
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 723, 1049
ClaI ATCGAT 1 cut(s) 885
Csp6I GTAC 1 cut(s) 771
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 3 cut(s) 203, 287, 958
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 3 cut(s) 242, 611, 1176
DpnI GATC 7 cut(s) 68, 88, 579, 754, 817, 884, 1206
DpnII GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
Eam1104I CTCTTC 4 cut(s) 100, 352, 430, 907
EarI CTCTTC 4 cut(s) 100, 352, 430, 907
EciI GGCGGA 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 723, 1049
Eco57I CTGAAG 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 580, 762
EcoRV GATATC 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 664
FaeI CATG 3 cut(s) 206, 290, 961
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 202, 286, 957
Fnu4HI GCNGC 2 cut(s) 525, 633
FokI GGATG 4 cut(s) 64, 439, 787, 996
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 2 cut(s) 525, 633
FspBI CTAG 2 cut(s) 84, 677
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 525, 633
GsuI CTGGAG 1 cut(s) 960
HaeII RGCGCY 1 cut(s) 321
HapII CCGG 5 cut(s) 14, 486, 804, 813, 1052
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 206, 290, 961
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 6 cut(s) 355, 651, 861, 966, 1001, 1100
HpaII CCGG 5 cut(s) 14, 486, 804, 813, 1052
HphI GGTGA 7 cut(s) 158, 164, 173, 188, 596, 1033, 1154
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 4 cut(s) 116, 844, 1105, 1177
Hpy188III TCNNGA 8 cut(s) 84, 556, 665, 677, 804, 858, 963, 977
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 614, 974
HpyCH4III ACNGT 5 cut(s) 277, 400, 855, 937, 1021
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 4 cut(s) 286, 524, 566, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 923
HpyF3I CTNAG 3 cut(s) 242, 611, 1176
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 206, 290, 961
HspAI GCGC 1 cut(s) 318
Kpn2I TCCGGA 1 cut(s) 803
Kzo9I GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
LguI GCTCTTC 2 cut(s) 352, 907
LmnI GCTCC 4 cut(s) 116, 923, 1055, 1158
Lsp1109I GCAGC 2 cut(s) 536, 619
LweI GCATC 2 cut(s) 583, 1118
MaeI CTAG 2 cut(s) 84, 677
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 5 cut(s) 296, 394, 808, 1021, 1157
MalI GATC 7 cut(s) 68, 88, 579, 754, 817, 884, 1206
MboI GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 3 cut(s) 86, 577, 815
MhlI GDGCHC 1 cut(s) 664
MluCI AATT 4 cut(s) 71, 370, 778, 874
MlyI GAGTC 2 cut(s) 349, 995
MnlI CCTC 3 cut(s) 91, 431, 1065
MroI TCCGGA 1 cut(s) 803
MseI TTAA 4 cut(s) 20, 341, 369, 402
MslI CAYNNNNRTG 2 cut(s) 201, 291
MspI CCGG 5 cut(s) 14, 486, 804, 813, 1052
MspR9I CCNGG 3 cut(s) 582, 764, 1053
MunI CAATTG 1 cut(s) 71
MvaI CCWGG 2 cut(s) 582, 764
MwoI GCNNNNNNNGC 2 cut(s) 482, 923
NciI CCSGG 1 cut(s) 1053
NdeII GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
NlaIII CATG 3 cut(s) 206, 290, 961
NlaIV GGNNCC 3 cut(s) 724, 925, 1154
NmuCI GTSAC 2 cut(s) 1021, 1157
NspI RCATGY 1 cut(s) 961
PciI ACATGT 1 cut(s) 957
PciSI GCTCTTC 2 cut(s) 352, 907
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PfeI GAWTC 4 cut(s) 651, 861, 966, 1100
PflMI CCANNNNNTGG 2 cut(s) 462, 581
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 2 cut(s) 526, 634
PleI GAGTC 2 cut(s) 349, 995
PpsI GAGTC 2 cut(s) 349, 995
PscI ACATGT 1 cut(s) 957
Psp6I CCWGG 2 cut(s) 580, 762
PspGI CCWGG 2 cut(s) 580, 762
PspN4I GGNNCC 3 cut(s) 724, 925, 1154
PspPI GGNCC 2 cut(s) 723, 1049
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 3 cut(s) 86, 577, 815
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
RseI CAYNNNNRTG 2 cut(s) 201, 291
SapI GCTCTTC 2 cut(s) 352, 907
SaqAI TTAA 4 cut(s) 20, 341, 369, 402
SatI GCNGC 2 cut(s) 525, 633
Sau3AI GATC 7 cut(s) 66, 86, 577, 752, 815, 882, 1204
Sau96I GGNCC 2 cut(s) 723, 1049
SchI GAGTC 2 cut(s) 349, 995
ScrFI CCNGG 3 cut(s) 582, 764, 1053
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 2 cut(s) 583, 1118
SfcI CTRYAG 2 cut(s) 99, 933
SinI GGWCC 2 cut(s) 723, 1049
SmiMI CAYNNNNRTG 2 cut(s) 201, 291
SmlI CTYRAG 2 cut(s) 663, 828
SmoI CTYRAG 2 cut(s) 663, 828
Sse9I AATT 4 cut(s) 71, 370, 778, 874
SsiI CCGC 1 cut(s) 483
SspI AATATT 2 cut(s) 131, 903
SspMI CTAG 2 cut(s) 84, 677
StyD4I CCNGG 3 cut(s) 580, 762, 1051
TaaI ACNGT 5 cut(s) 277, 400, 855, 937, 1021
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 459, 885, 1004
TasI AATT 4 cut(s) 71, 370, 778, 874
TatI WGTACW 1 cut(s) 770
TfiI GAWTC 4 cut(s) 651, 861, 966, 1100
Tru1I TTAA 4 cut(s) 20, 341, 369, 402
Tru9I TTAA 4 cut(s) 20, 341, 369, 402
TscAI CASTG 2 cut(s) 499, 898
TseFI GTSAC 2 cut(s) 1021, 1157
TseI GCWGC 2 cut(s) 524, 632
Tsp45I GTSAC 2 cut(s) 1021, 1157
TspDTI ATGAA 6 cut(s) 219, 420, 703, 864, 1108, 1161
TspGWI ACGGA 1 cut(s) 1145
TspRI CASTG 2 cut(s) 499, 898
Van91I CCANNNNNTGG 2 cut(s) 462, 581
VpaK11BI GGWCC 2 cut(s) 723, 1049
XbaI TCTAGA 2 cut(s) 83, 676
XceI RCATGY 1 cut(s) 961
XspI CTAG 2 cut(s) 84, 677
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.