Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011793

Physical Location & Seq

Genomic Coordinates Reverse (-)

67805394 .. 67809815

Gene Structure 4422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATCCGATTAGCCGCTGGCGAGCCCGATTTTGACACCTCTTCCGTCGTAGCTGAGGTGGGGATCAATGCGATTCGGGAGGGGTATACCAGGTACACACCAAATGCAGGGACTTTGGAGCTGCGTCAGGCGATTTGTGATAAGCTGCAAGAGGAGAATGGGATCTCTTACACATCTGATCAGGTTTTGGTTAGTAATGGAGCCAAGCAGTGTATTGATCAAGCAGTTTCGTTCAGGTCCTGCATGTCTGTTCTTTTCGCATCTGGACATCTTATCACTAACCGAAACTCACCATCTCCGGCCAAGTACTTTGTGCACCATCTGTGTCTCACCACCTCTTTAGTATCACCCATTGTTTCTTCTCTCAGCATCCCAAATGCTGCGCACCATAAACAGGAAGATGATGTTTTTCCCCCTGGAATTCCTCCCTCAGACACAAACACAACCTCCTATCATTGCGTCGATCAAAATGGGCATTGTAATTTCACAAAGGTGCAAGCAGCTGTTGATGCAGTTCCAGAACATAGCCCAAAAAGGATAGTAATATTGATTAAAAGAGGAATTTACAATGAGAAAGTGGTGGTTGCAATTAGCAAACCAAATATAACATTTCAAGGAGAAGGGTACTTATGGACAGGAATTTCTAGGAATGACACACAACTCAGTGCCTCTGTTCATGTTGCTGGTGCCAACTTCATTGCTAAGAACATAAGCTTCAAGAATACGGCTCCACCTCCTAAAGCTGGTGCTAAAGAAGCTCAAGCTGTAGTGCTTAGAGTATCGGGAGATAAAGCTGCATTTTGGGGTTGTGGATTCTATGGATACCAAGACACCCTCGATGATGAAAATGGTCGACATTACTTTAGGGATTGTTATATCCAGGGCACCGTTGATTTCATCTATGGCAATGGACAGTCTTTCTATGAGAATTGCCAGCTAATTTCCGTAGCAGCCACGGGATCAGATGCGGTTATTACAGCTAACGGCAGAAATAATACCCTTAAGGTTGAGAATAGTGGCTTTGCCTTTCTGAATTGCACCATTGGAGGGACTGGAAGAGTCTTGTTAGGTCGAGATTGGAGGCGTTTTACACGAGTGGTTTTTGCCTACACCAAAATGAGTGACATTATCACTCCTGAAGGTTGGCGTGCAGAAATCGAAAACGAAGGGACTGGACTGTGTTCTATGGAGAATACAACTGCTCGGGTCCAGGAGCTAATTAATATGAGCAAGCGTAGGCCTTTCGTGCACAGGCTCAGTCACACTCAGGCTTCCCCTTTCCTTAATGCGTCTTTCATTGATGGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

437

Amino Acids

47.67

Weight (kDa)

6.86

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	1 - 76	7.7e-09	Aminotransferase class I and II
Pectinesterase	PF01095	154 - 389	4.3e-59	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36710
fragaria_vesca	FvH4_6g17090 FvH4_6g17090 FvH4_6g39480
malus_domestica	MD12G1104100.v1.1
prunus_persica	Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471171
rosa_laevigata	RLG00000020704 RLG00000024201
rosa_multiflora	Rmu_sc0010073.1_g000012
rosa_roxburghii	Rroxscaffold_6G00410260
rosa_rugosa	Rorug03G0115700 Rorug03G0115800
rosa_samantha	Rh3BG190300 Rh3CG180600
rosa_wichuraiana	Rw3G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	384
AccB1I	GGYRCC	2 cut(s)	686, 884
AccI	GTMKAC	2 cut(s)	86, 853
AciI	CCGC	2 cut(s)	15, 968
AclWI	GGATC	3 cut(s)	71, 170, 967
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	420, 561, 639
AcuI	CTGAAG	1 cut(s)	1158
AfaI	GTAC	3 cut(s)	95, 308, 626
AfiI	CCNNNNNNNGG	4 cut(s)	107, 394, 743, 1047
AflII	CTTAAG	1 cut(s)	1001
AgsI	TTSAA	2 cut(s)	614, 718
AjnI	CCWGG	4 cut(s)	89, 415, 879, 1209
AleI	CACNNNNGTG	1 cut(s)	491
Alw21I	GWGCWC	2 cut(s)	318, 1251
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	2 cut(s)	314, 1247
AlwI	GGATC	3 cut(s)	71, 170, 967
AlwNI	CAGNNNCTG	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	1203
AoxI	GGCC	2 cut(s)	300, 1238
ApaLI	GTGCAC	2 cut(s)	314, 1247
ApeKI	GCWGC	6 cut(s)	121, 145, 380, 500, 794, 950
ApoI	RAATTY	3 cut(s)	420, 561, 639
AseI	ATTAAT	1 cut(s)	1221
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	237, 1207
AsuHPI	GGTGA	3 cut(s)	282, 322, 339
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	2 cut(s)	237, 1207
BaeGI	GKGCMC	3 cut(s)	318, 887, 1251
BanI	GGYRCC	2 cut(s)	686, 884
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	1092
Bbv12I	GWGCWC	2 cut(s)	318, 1251
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	108, 132, 367, 512, 781, 962
BccI	CCATC	3 cut(s)	301, 327, 1295
BceAI	ACGGC	2 cut(s)	741, 1000
BciT130I	CCWGG	4 cut(s)	91, 417, 881, 1211
BciVI	GTATCC	1 cut(s)	815
BclI	TGATCA	2 cut(s)	178, 217
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	1001
BfuI	GTATCC	1 cut(s)	815
BisI	GCNGC	7 cut(s)	15, 122, 146, 381, 501, 795, 951
BlsI	GCNGC	7 cut(s)	16, 123, 147, 382, 502, 796, 952
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	4 cut(s)	91, 417, 881, 1211
Bme18I	GGWCC	2 cut(s)	237, 1207
BmeT110I	CYCGRG	1 cut(s)	1203
BmgT120I	GGNCC	2 cut(s)	237, 1207
BmiI	GGNNCC	5 cut(s)	202, 688, 729, 886, 1208
BmrFI	CCNGG	4 cut(s)	91, 417, 881, 1211
BmsI	GCATC	4 cut(s)	269, 378, 499, 955
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	415, 880, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 394, 743, 1047
Bse1I	ACTGG	2 cut(s)	1057, 1177
Bse3DI	GCAATG	3 cut(s)	454, 696, 913
BseBI	CCWGG	4 cut(s)	91, 417, 881, 1211
BseDI	CCNNGG	3 cut(s)	415, 880, 954
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	107, 394, 743, 1047
BseMI	GCAATG	3 cut(s)	454, 696, 913
BseMII	CTCAG	6 cut(s)	45, 379, 444, 676, 1270, 1280
BseNI	ACTGG	2 cut(s)	1057, 1177
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	3 cut(s)	318, 887, 1251
BseXI	GCAGC	6 cut(s)	108, 132, 367, 512, 781, 962
BsgI	GTGCAG	1 cut(s)	1170
BshFI	GGCC	2 cut(s)	302, 1240
BshNI	GGYRCC	2 cut(s)	686, 884
BsiHKAI	GWGCWC	2 cut(s)	318, 1251
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	3 cut(s)	124, 1063, 1183
BslI	CCNNNNNNNGG	4 cut(s)	107, 394, 743, 1047
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	3 cut(s)	124, 1063, 1183
BsnI	GGCC	2 cut(s)	302, 1240
BsoBI	CYCGRG	1 cut(s)	1203
Bsp1286I	GDGCHC	4 cut(s)	27, 318, 887, 1251
Bsp143I	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
BspACI	CCGC	2 cut(s)	15, 968
BspANI	GGCC	2 cut(s)	302, 1240
BspCNI	CTCAG	6 cut(s)	46, 378, 443, 675, 1269, 1279
BspLI	GGNNCC	5 cut(s)	202, 688, 729, 886, 1208
BspPI	GGATC	3 cut(s)	71, 170, 967
BspT107I	GGYRCC	2 cut(s)	686, 884
BspTI	CTTAAG	1 cut(s)	1001
BsrDI	GCAATG	3 cut(s)	454, 696, 913
BsrI	ACTGG	2 cut(s)	1057, 1177
BssECI	CCNNGG	3 cut(s)	415, 880, 954
BssMI	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
BssNAI	GTATAC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	1092
Bst1107I	GTATAC	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	1092
Bst2UI	CCWGG	4 cut(s)	91, 417, 881, 1211
Bst4CI	ACNGT	3 cut(s)	889, 915, 1179
Bst6I	CTCTTC	2 cut(s)	46, 1051
BstAFI	CTTAAG	1 cut(s)	1001
BstC8I	GCNNGC	6 cut(s)	19, 23, 498, 935, 1149, 1232
BstDEI	CTNAG	8 cut(s)	54, 365, 430, 662, 702, 773, 1256, 1266
BstDSI	CCRYGG	1 cut(s)	954
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	7 cut(s)	6, 66, 165, 181, 220, 466, 962
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 755, 1246
BstNI	CCWGG	4 cut(s)	91, 417, 881, 1211
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	4 cut(s)	89, 415, 879, 1209
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	3 cut(s)	318, 887, 1251
BstV1I	GCAGC	6 cut(s)	108, 132, 367, 512, 781, 962
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BstZ17I	GTATAC	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	302, 1240
BtgI	CCRYGG	1 cut(s)	954
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 670
Cac8I	GCNNGC	6 cut(s)	19, 23, 498, 935, 1149, 1232
CaiI	CAGNNNCTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	237, 1207
CseI	GACGC	3 cut(s)	113, 448, 1278
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	94, 307, 625
CviAII	CATG	2 cut(s)	244, 677
CviQI	GTAC	3 cut(s)	94, 307, 625
DdeI	CTNAG	8 cut(s)	54, 365, 430, 662, 702, 773, 1256, 1266
DpnI	GATC	7 cut(s)	5, 65, 164, 180, 219, 465, 961
DpnII	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	46, 1051
EarI	CTCTTC	2 cut(s)	46, 1051
Eco147I	AGGCCT	1 cut(s)	1240
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	237, 1207
Eco57I	CTGAAG	1 cut(s)	1158
Eco88I	CYCGRG	1 cut(s)	1203
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	4 cut(s)	89, 415, 879, 1209
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	2 cut(s)	247, 680
FaqI	GGGAC	3 cut(s)	124, 1063, 1183
FatI	CATG	2 cut(s)	243, 676
FbaI	TGATCA	2 cut(s)	178, 217
FblI	GTMKAC	2 cut(s)	86, 853
Fnu4HI	GCNGC	7 cut(s)	15, 122, 146, 381, 501, 795, 951
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	7 cut(s)	15, 122, 146, 381, 501, 795, 951
FspBI	CTAG	1 cut(s)	645
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	7 cut(s)	15, 122, 146, 381, 501, 795, 951
HaeIII	GGCC	2 cut(s)	302, 1240
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	3 cut(s)	113, 448, 1278
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	2 cut(s)	247, 680
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	3 cut(s)	73, 813, 1059
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	3 cut(s)	282, 322, 339
Hpy166II	GTNNAC	5 cut(s)	87, 96, 316, 854, 1249
Hpy188I	TCNGA	5 cut(s)	8, 178, 433, 964, 1032
Hpy188III	TCNNGA	7 cut(s)	77, 264, 518, 718, 783, 1073, 1136
Hpy8I	GTNNAC	5 cut(s)	87, 96, 316, 854, 1249
Hpy99I	CGWCG	2 cut(s)	50, 464
HpyAV	CCTTC	3 cut(s)	614, 1133, 1160
HpyCH4III	ACNGT	3 cut(s)	889, 915, 1179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 755, 1246
HpyF3I	CTNAG	8 cut(s)	54, 365, 430, 662, 702, 773, 1256, 1266
Hsp92II	CATG	2 cut(s)	247, 680
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	2 cut(s)	178, 217
Kzo9I	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
LmnI	GCTCC	4 cut(s)	118, 200, 733, 1213
Lsp1109I	GCAGC	6 cut(s)	108, 132, 367, 512, 781, 962
LweI	GCATC	4 cut(s)	269, 378, 499, 955
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	2 cut(s)	1121, 1259
MalI	GATC	7 cut(s)	5, 65, 164, 180, 219, 465, 961
MboI	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
MboII	GAAGA	4 cut(s)	33, 351, 410, 1068
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	4 cut(s)	27, 318, 887, 1251
MluCI	AATT	9 cut(s)	420, 481, 561, 588, 639, 928, 939, 1033, 1218
MlyI	GAGTC	1 cut(s)	1068
MseI	TTAA	5 cut(s)	552, 1002, 1221, 1284, 1309
MslI	CAYNNNNRTG	2 cut(s)	491, 1115
MspA1I	CMGCKG	2 cut(s)	17, 503
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	4 cut(s)	91, 417, 881, 1211
MvaI	CCWGG	4 cut(s)	91, 417, 881, 1211
MwoI	GCNNNNNNNGC	3 cut(s)	509, 755, 1246
NdeII	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
NlaIII	CATG	2 cut(s)	247, 680
NlaIV	GGNNCC	5 cut(s)	202, 688, 729, 886, 1208
NmuCI	GTSAC	2 cut(s)	1121, 1259
NsbI	TGCGCA	1 cut(s)	384
NspI	RCATGY	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	1240
PfeI	GAWTC	2 cut(s)	73, 813
PfoI	TCCNGGA	1 cut(s)	1209
PkrI	GCNGC	7 cut(s)	16, 123, 147, 382, 502, 796, 952
PleI	GAGTC	1 cut(s)	1067
PpsI	GAGTC	1 cut(s)	1067
PpuMI	RGGWCCY	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	4 cut(s)	89, 415, 879, 1209
PspGI	CCWGG	4 cut(s)	89, 415, 879, 1209
PspN4I	GGNNCC	5 cut(s)	202, 688, 729, 886, 1208
PspPI	GGNCC	2 cut(s)	237, 1207
PspPPI	RGGWCCY	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	3 cut(s)	95, 308, 626
RsaNI	GTAC	3 cut(s)	94, 307, 625
RseI	CAYNNNNRTG	2 cut(s)	491, 1115
SalI	GTCGAC	1 cut(s)	852
SaqAI	TTAA	5 cut(s)	552, 1002, 1221, 1284, 1309
SatI	GCNGC	7 cut(s)	15, 122, 146, 381, 501, 795, 951
Sau3AI	GATC	7 cut(s)	3, 63, 162, 178, 217, 463, 959
Sau96I	GGNCC	2 cut(s)	237, 1207
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	1 cut(s)	1068
ScrFI	CCNGG	4 cut(s)	91, 417, 881, 1211
SduI	GDGCHC	4 cut(s)	27, 318, 887, 1251
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	4 cut(s)	269, 378, 499, 955
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	237, 1207
SmiMI	CAYNNNNRTG	2 cut(s)	491, 1115
SmlI	CTYRAG	2 cut(s)	759, 1001
SmoI	CTYRAG	2 cut(s)	759, 1001
Sse9I	AATT	9 cut(s)	420, 481, 561, 588, 639, 928, 939, 1033, 1218
SseBI	AGGCCT	1 cut(s)	1240
SsiI	CCGC	2 cut(s)	15, 968
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	1240
StyD4I	CCNGG	4 cut(s)	89, 415, 879, 1209
TaaI	ACNGT	3 cut(s)	889, 915, 1179
TaqI	TCGA	5 cut(s)	462, 837, 853, 1072, 1158
TasI	AATT	9 cut(s)	420, 481, 561, 588, 639, 928, 939, 1033, 1218
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	73, 813
Tru1I	TTAA	5 cut(s)	552, 1002, 1221, 1284, 1309
Tru9I	TTAA	5 cut(s)	552, 1002, 1221, 1284, 1309
TscAI	CASTG	2 cut(s)	215, 670
TseFI	GTSAC	2 cut(s)	1121, 1259
TseI	GCWGC	6 cut(s)	121, 145, 380, 500, 794, 950
Tsp45I	GTSAC	2 cut(s)	1121, 1259
TspDTI	ATGAA	5 cut(s)	665, 685, 858, 886, 1285
TspGWI	ACGGA	2 cut(s)	34, 934
TspRI	CASTG	2 cut(s)	215, 670
Vha464I	CTTAAG	1 cut(s)	1001
VneI	GTGCAC	2 cut(s)	314, 1247
VpaK11BI	GGWCC	2 cut(s)	237, 1207
VspI	ATTAAT	1 cut(s)	1221
XapI	RAATTY	3 cut(s)	420, 561, 639
XceI	RCATGY	1 cut(s)	247
XmiI	GTMKAC	2 cut(s)	86, 853
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.