Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011793

Physical Location & Seq

Genomic Coordinates Forward (+)

14627231 .. 14629511

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G123900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAGAACCAAAACAACCCTCTTCTTTTGGTTCTCAGCCTTTGTCATTGCACTTGTTTCCACTATCATCTCTCTCCATCACATCCCCTCCTCTCTCTCCTCAACTTCTACTATTGCCAAAAGTGCTCAAAATAGTTTCAAGCTTGCTATATTAGATGGAGTTTTCAAGAAAAGTGGTGAGAGCTTATTGTCTACCTTGAGAAGCATTGTGTCCAGACACCACCACCACCACCACCACCGCCGCCGGCGGAGCCCTAAATGTGCCAACACAAAATGGAAATTTAGGCTCGTATCTGAATACAATGTGTCCCTTGTTTTGACAGTAGGCTTAAAGGGTTGCACAAATTTTAGTAGCGTGCAAAAGGCAGTAGATGCTGCTCCTGAGCTTAGCAACTATAGAACCCTCATCATAATCGATTCGGGTACTTACAGGGAAAAGGTGACGGTGGCTGCTAACAAGACCAATTTGATATTTCAAGGTCAGGGCTATCTTAACACCATCATAGCATGGAATGACACAGCCAATTCTACTGGAGGGACGGCTCGTAGCTCTTCAGTTGCCATCTTTGCTCCCTATTTCACTGCCTACAATATTAGCTTTCAGAACACAGCTCCGCCACCAGGTCCTGGAAGAATTGGAGCACAGGCTGTGGCACTAAGAATTGCAGGAGATCAAGCTGCATTTTATGGATGTGGCTTCTATGGTGCCCAAGACACCCTTAATGATGATCGTGGGAGGCATTATTTTAGTGAATGTTTCATTCAAGGGTCCATCGATTTCATTTTTGGCAAAGCTAAATCACTCTATGAGGGGTGCACCATTAATTCGATAGCAAATGCGGTCAAACGGGGGATAAGTGGAGCCGTCACGGCACAAGGAAGACAGTCGGCGCAGGAGCAAAGCGGATTTTCGTTTGTGAATTGCAGCATTGGAGGAAGTGGGAAAGTGTGGCTTGGTCGAGCTTGGGGAGCTTATGCAACTGTGGTGTTTTCTAAAACATACATGTCTGATGTTGTGGCTTCAGATGGATGGAATGACTGGAGAGACCCCTCTAGAGACCAGACAGTGTTGTTTGGGGAGTACGATTGTATGGGATCGGGCTCAAATTATACGCATAGAACCTCGTATGCAAGGCAACTCAATGAATCTGAGGTAGCCCCCTTCTTGGACATTTCCTACGTTGATGGAAATGAGTGGCTTTTACATCCTCCACCCTTCAATCTTCATGATGACCACTATAAGCACAATGATCAATTGACTCAAACTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

424

Amino Acids

46.63

Weight (kDa)

9.11

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36710
fragaria_vesca	FvH4_6g17090 FvH4_6g17090 FvH4_6g39480
malus_domestica	MD12G1104100.v1.1
prunus_persica	Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1 Prupe.7G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471171
rosa_laevigata	RLG00000020704 RLG00000024201
rosa_multiflora	Rmu_sc0010073.1_g000012
rosa_roxburghii	Rroxscaffold_6G00410260
rosa_rugosa	Rorug03G0115700 Rorug03G0115800
rosa_samantha	Rh3BG190300 Rh3CG180600
rosa_wichuraiana	Rw3G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	191
AciI	CCGC	6 cut(s)	238, 241, 247, 614, 839, 903
AclWI	GGATC	1 cut(s)	1102
AcsI	RAATTY	2 cut(s)	278, 343
AcuI	CTGAAG	2 cut(s)	537, 1005
AfaI	GTAC	2 cut(s)	424, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	620, 626, 1165
AflIII	ACRYGT	1 cut(s)	1002
AgsI	TTSAA	5 cut(s)	139, 166, 476, 764, 1219
AjnI	CCWGG	2 cut(s)	619, 625
Alw21I	GWGCWC	3 cut(s)	127, 643, 818
Alw26I	GTCTC	2 cut(s)	1038, 1050
Alw44I	GTGCAC	1 cut(s)	814
AlwI	GGATC	1 cut(s)	1102
AlwNI	CAGNNNCTG	1 cut(s)	626
ApaLI	GTGCAC	1 cut(s)	814
ApeKI	GCWGC	4 cut(s)	374, 449, 677, 924
ApoI	RAATTY	2 cut(s)	278, 343
AseI	ATTAAT	1 cut(s)	822
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	2 cut(s)	623, 768
AsuHPI	GGTGA	2 cut(s)	188, 451
AvaII	GGWCC	2 cut(s)	623, 768
BaeGI	GKGCMC	2 cut(s)	709, 818
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	254, 1103
BbsI	GAAGAC	1 cut(s)	886
Bbv12I	GWGCWC	3 cut(s)	127, 643, 818
BbvI	GCAGC	4 cut(s)	361, 436, 664, 936
BccI	CCATC	8 cut(s)	84, 149, 506, 569, 779, 1019, 1023, 1178
BceAI	ACGGC	3 cut(s)	555, 848, 885
BciT130I	CCWGG	2 cut(s)	621, 627
BclI	TGATCA	1 cut(s)	1249
BcoDI	GTCTC	2 cut(s)	1038, 1050
BfaI	CTAG	1 cut(s)	1053
BfmI	CTRYAG	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	869
BisI	GCNGC	5 cut(s)	241, 375, 450, 678, 925
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	5 cut(s)	242, 376, 451, 679, 926
Bme1390I	CCNGG	2 cut(s)	621, 627
Bme18I	GGWCC	2 cut(s)	623, 768
BmgT120I	GGNCC	2 cut(s)	623, 768
BmiI	GGNNCC	4 cut(s)	251, 706, 769, 862
BmrFI	CCNGG	2 cut(s)	621, 627
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	886
BpmI	CTGGAG	2 cut(s)	552, 1060
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	2 cut(s)	414, 774
BsaI	GGTCTC	2 cut(s)	1038, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	620, 626, 1165
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	535, 1043
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	621, 627
BseCI	ATCGAT	2 cut(s)	414, 774
BseGI	GGATG	4 cut(s)	81, 695, 1034, 1204
BseLI	CCNNNNNNNGG	3 cut(s)	620, 626, 1165
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	48, 372, 1140
BseNI	ACTGG	2 cut(s)	535, 1043
BseRI	GAGGAG	2 cut(s)	79, 88
BseSI	GKGCMC	2 cut(s)	709, 818
BseXI	GCAGC	4 cut(s)	361, 436, 664, 936
BshNI	GGYRCC	1 cut(s)	704
BshVI	ATCGAT	2 cut(s)	414, 774
BsiHKAI	GWGCWC	3 cut(s)	127, 643, 818
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	292, 550
BslI	CCNNNNNNNGG	3 cut(s)	620, 626, 1165
BsmAI	GTCTC	2 cut(s)	1038, 1050
BsmFI	GGGAC	2 cut(s)	292, 550
Bso31I	GGTCTC	2 cut(s)	1038, 1050
Bsp1286I	GDGCHC	6 cut(s)	127, 254, 643, 709, 818, 1103
Bsp143I	GATC	4 cut(s)	670, 727, 1094, 1249
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	6 cut(s)	238, 241, 247, 614, 839, 903
BspCNI	CTCAG	3 cut(s)	47, 373, 1141
BspDI	ATCGAT	2 cut(s)	414, 774
BspHI	TCATGA	1 cut(s)	1225
BspLI	GGNNCC	4 cut(s)	251, 706, 769, 862
BspPI	GGATC	1 cut(s)	1102
BspQI	GCTCTTC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	1038, 1050
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	535, 1043
BssAI	RCCGGY	1 cut(s)	243
BssMI	GATC	4 cut(s)	670, 727, 1094, 1249
Bst2UI	CCWGG	2 cut(s)	621, 627
Bst4CI	ACNGT	5 cut(s)	322, 445, 885, 982, 1066
Bst6I	CTCTTC	2 cut(s)	26, 556
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	144, 245, 356
BstDEI	CTNAG	5 cut(s)	34, 381, 386, 656, 1149
BstF5I	GGATG	4 cut(s)	81, 695, 1034, 1204
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	4 cut(s)	673, 730, 1097, 1252
BstMAI	GTCTC	2 cut(s)	1038, 1050
BstMBI	GATC	4 cut(s)	670, 727, 1094, 1249
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 249, 371, 566, 869, 968
BstNI	CCWGG	2 cut(s)	621, 627
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	2 cut(s)	619, 625
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	2 cut(s)	709, 818
BstV1I	GCAGC	4 cut(s)	361, 436, 664, 936
BstV2I	GAAGAC	1 cut(s)	886
Bsu15I	ATCGAT	2 cut(s)	414, 774
BsuTUI	ATCGAT	2 cut(s)	414, 774
BtsCI	GGATG	4 cut(s)	81, 695, 1034, 1204
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	579, 1071
Cac8I	GCNNGC	3 cut(s)	144, 245, 356
CaiI	CAGNNNCTG	1 cut(s)	626
CciI	TCATGA	1 cut(s)	1225
CfoI	GCGC	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	623, 768
ClaI	ATCGAT	2 cut(s)	414, 774
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	423, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	3 cut(s)	507, 1003, 1226
CviQI	GTAC	2 cut(s)	423, 1081
DdeI	CTNAG	5 cut(s)	34, 381, 386, 656, 1149
DpnI	GATC	4 cut(s)	672, 729, 1096, 1251
DpnII	GATC	4 cut(s)	670, 727, 1094, 1249
Eam1104I	CTCTTC	2 cut(s)	26, 556
EarI	CTCTTC	2 cut(s)	26, 556
EciI	GGCGGA	2 cut(s)	262, 603
Eco24I	GRGCYC	2 cut(s)	254, 1103
Eco31I	GGTCTC	2 cut(s)	1038, 1050
Eco47I	GGWCC	2 cut(s)	623, 768
Eco57I	CTGAAG	2 cut(s)	537, 1005
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	619, 625
EcoT38I	GRGCYC	2 cut(s)	254, 1103
FaeI	CATG	3 cut(s)	510, 1006, 1229
FalI	AAGNNNNNCTT	4 cut(s)	702, 734, 936, 968
FaqI	GGGAC	2 cut(s)	292, 550
FatI	CATG	3 cut(s)	506, 1002, 1225
FbaI	TGATCA	1 cut(s)	1249
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	5 cut(s)	241, 375, 450, 678, 925
FokI	GGATG	4 cut(s)	68, 702, 1041, 1191
FriOI	GRGCYC	2 cut(s)	254, 1103
Fsp4HI	GCNGC	5 cut(s)	241, 375, 450, 678, 925
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	5 cut(s)	241, 375, 450, 678, 925
GsuI	CTGGAG	2 cut(s)	552, 1060
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	3 cut(s)	510, 1006, 1229
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	416, 1145, 1258
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	188, 451
Hpy166II	GTNNAC	2 cut(s)	192, 816
Hpy188I	TCNGA	5 cut(s)	295, 603, 1009, 1024, 1150
Hpy188III	TCNNGA	5 cut(s)	166, 213, 380, 1053, 1226
Hpy8I	GTNNAC	2 cut(s)	192, 816
HpyAV	CCTTC	2 cut(s)	1171, 1225
HpyCH4III	ACNGT	5 cut(s)	322, 445, 885, 982, 1066
HpyCH4IV	ACGT	1 cut(s)	1179
HpyCH4V	TGCA	9 cut(s)	50, 339, 358, 665, 680, 816, 924, 977, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 249, 371, 566, 869, 968
HpyF3I	CTNAG	5 cut(s)	34, 381, 386, 656, 1149
HpySE526I	ACGT	1 cut(s)	1179
Hsp92II	CATG	3 cut(s)	510, 1006, 1229
HspAI	GCGC	1 cut(s)	890
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	1249
Kzo9I	GATC	4 cut(s)	670, 727, 1094, 1249
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	8 cut(s)	249, 382, 574, 616, 638, 860, 895, 968
Lsp1109I	GCAGC	4 cut(s)	361, 436, 664, 936
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	1 cut(s)	1053
MaeII	ACGT	1 cut(s)	1179
MaeIII	GTNAC	2 cut(s)	439, 865
MalI	GATC	4 cut(s)	672, 729, 1096, 1251
MboI	GATC	4 cut(s)	670, 727, 1094, 1249
MboII	GAAGA	5 cut(s)	13, 543, 642, 891, 1214
MfeI	CAATTG	1 cut(s)	1253
MhlI	GDGCHC	6 cut(s)	127, 254, 643, 709, 818, 1103
MlyI	GAGTC	1 cut(s)	1252
MreI	CGCCGGCG	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	243
MseI	TTAA	4 cut(s)	329, 492, 720, 822
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	621, 627
MunI	CAATTG	1 cut(s)	1253
MvaI	CCWGG	2 cut(s)	621, 627
MwoI	GCNNNNNNNGC	6 cut(s)	122, 249, 371, 566, 869, 968
NaeI	GCCGGC	1 cut(s)	245
NdeII	GATC	4 cut(s)	670, 727, 1094, 1249
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	510, 1006, 1229
NlaIV	GGNNCC	4 cut(s)	251, 706, 769, 862
NmuCI	GTSAC	2 cut(s)	439, 865
NspI	RCATGY	1 cut(s)	1006
PagI	TCATGA	1 cut(s)	1225
PciI	ACATGT	1 cut(s)	1002
PciSI	GCTCTTC	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	416, 1145
PflMI	CCANNNNNTGG	1 cut(s)	626
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	5 cut(s)	242, 376, 451, 679, 926
PleI	GAGTC	1 cut(s)	1252
PpsI	GAGTC	1 cut(s)	1252
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	1 cut(s)	1002
PshBI	ATTAAT	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	619, 625
PspGI	CCWGG	2 cut(s)	619, 625
PspN4I	GGNNCC	4 cut(s)	251, 706, 769, 862
PspPI	GGNCC	2 cut(s)	623, 768
PspPPI	RGGWCCY	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	424, 1082
RsaNI	GTAC	2 cut(s)	423, 1081
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	329, 492, 720, 822
SatI	GCNGC	5 cut(s)	241, 375, 450, 678, 925
Sau3AI	GATC	4 cut(s)	670, 727, 1094, 1249
Sau96I	GGNCC	2 cut(s)	623, 768
SchI	GAGTC	1 cut(s)	1252
ScrFI	CCNGG	2 cut(s)	621, 627
SduI	GDGCHC	6 cut(s)	127, 254, 643, 709, 818, 1103
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	394
SgrAI	CRCCGGYG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	623, 768
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SsiI	CCGC	6 cut(s)	238, 241, 247, 614, 839, 903
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	2 cut(s)	619, 625
TaaI	ACNGT	5 cut(s)	322, 445, 885, 982, 1066
TaiI	ACGT	1 cut(s)	1182
TaqI	TCGA	4 cut(s)	414, 774, 827, 958
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	416, 1145
Tru1I	TTAA	4 cut(s)	329, 492, 720, 822
Tru9I	TTAA	4 cut(s)	329, 492, 720, 822
TscAI	CASTG	2 cut(s)	586, 1071
TseFI	GTSAC	2 cut(s)	439, 865
TseI	GCWGC	4 cut(s)	374, 449, 677, 924
Tsp45I	GTSAC	2 cut(s)	439, 865
TspDTI	ATGAA	4 cut(s)	748, 769, 1158, 1214
TspRI	CASTG	2 cut(s)	586, 1071
Van91I	CCANNNNNTGG	1 cut(s)	626
VneI	GTGCAC	1 cut(s)	814
VpaK11BI	GGWCC	2 cut(s)	623, 768
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	2 cut(s)	278, 343
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.