Rh3CG180600

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011793
Physical Location & Seq
Reverse (-)
15883371 .. 15885714
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG180600.1

Sequence Viewer

Length: 1125 bp
ATGAGAACCAAAACAACATTCTTCTTTTGGCTCTCTGCCTTGGCTATTGCACTAGTTTCCATTACCTTTGCACTCCGCAGCTTCTCATCTCTTTCCTCAACTTCTGTAATCTCCAACTTTGTGCAAACTGGCTCCGATCTTGCCATGTTTGATGTTTTTTTCAAGCAAAGTGTTGAGACCTTATTGTCAACCGTGAGAAGCATTGTGTCCAGACACCATCATCACCAGCAGAGGATAAACTGCGACGAAAAATGGAACTCGAGGCTCATATCCGAATTCAATGTGTCACTTGTTTTGACTGTTGGCTTAAATGGCTGCACCAACTTTAGTAGTGTGCAAAAGGCAGTAGATGCCGTTCCTGAGCTTAGCACTAATAGGACACTCATCATAATCGACTCAGGTACTTACAGGGAGAAGGTGACAGTTAATGTTAGCAAGACCAATTTGATATTTCAAGGTCAGGGTTATCTTAACACTGCCATAGCTTGGAATGACTCGGCCAATTCTTCTGGGGGTACTGGCCGAAGCTCTTCAGTTTCTATATCTGCTCCCAATTTCACTGCCTACAACATTAGCTTTAAGAACACAGCTCCGCCACCATCAAAAGGCAGAATTGGAGCACAGGCAGTGGCACTTCGAGTTTCTGGAGATCAAGCTGCATTTTATGGATGTGGTTTCTATGGGGCGCAAGACACTCTCAATGACGACCGTGGAAGACATTATTTTAGAGAATGTTTCATTCAAGGATCCATAGATTTCATTTTCGGAAGCGCTAGATCACTATATGAGGGGTGCACCATTAATTCAATAGCAAATCCAGTGAAAGGTGGGATTCCACTGAAAGGTAGGATAAGTGGAGCCATCACAGCACAAGGAAGGCAATCAATGCAGGAGCAAAGTGGGTATTCCTTTGTGAATTGCAGTATTGGAGGAAGTGGGAGAGTGTGGCTTGGTCGAGCTTGGGGAGCTTACGCCACTGTGGTTTTCTCCAAAACGTACATGTCTGACGTTGTTGCTTCAGATGGTTGGAATGACTGGAGTGACCCTTCTAGAGATCAGTACGTGGTTTCTCCCCTCGTTGTTTCAGATGGTCTGAAAGTCGCAATTTCAATTTTTCATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

374

Amino Acids

40.63

Weight (kDa)

9.11

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 100 - 348 1.1e-56 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 2 cut(s) 76, 593
AclWI GGATC 2 cut(s) 741, 754
AcoI YGGCCR 2 cut(s) 498, 520
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 2 cut(s) 516, 1002
AfaI GTAC 4 cut(s) 403, 517, 998, 1061
AfeI AGCGCT 1 cut(s) 772
AfiI CCNNNNNNNGG 4 cut(s) 486, 605, 824, 842
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 6 cut(s) 163, 280, 455, 743, 807, 1110
AhlI ACTAGT 1 cut(s) 52
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 9 cut(s) 81, 364, 485, 528, 576, 590, 656, 959, 968
AluI AGCT 9 cut(s) 81, 364, 485, 528, 576, 590, 656, 959, 968
Alw21I GWGCWC 2 cut(s) 622, 797
Alw26I GTCTC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 793
AlwI GGATC 2 cut(s) 741, 754
Ama87I CYCGRG 1 cut(s) 259
Aor51HI AGCGCT 1 cut(s) 772
AoxI GGCC 2 cut(s) 498, 520
ApaLI GTGCAC 1 cut(s) 793
ApeKI GCWGC 3 cut(s) 78, 315, 656
ApoI RAATTY 1 cut(s) 275
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 2 cut(s) 688, 773
AsuHPI GGTGA 2 cut(s) 215, 430
AvaI CYCGRG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 797
BamHI GGATCC 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 721
Bbv12I GWGCWC 2 cut(s) 622, 797
BbvI GCAGC 3 cut(s) 90, 302, 643
BccI CCATC 5 cut(s) 225, 607, 869, 1016, 1082
BceAI ACGGC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 3 cut(s) 53, 774, 1050
BfmI CTRYAG 1 cut(s) 1121
BfoI RGCGCY 1 cut(s) 774
BisI GCNGC 3 cut(s) 79, 316, 657
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 3 cut(s) 80, 317, 658
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 3 cut(s) 133, 748, 859
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 721
BpmI CTGGAG 2 cut(s) 666, 1057
Bpu10I CCTNAGC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 39, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 486, 605, 824, 842
Bse1I ACTGG 4 cut(s) 133, 523, 818, 1040
BseDI CCNNGG 2 cut(s) 39, 709
BseGI GGATG 1 cut(s) 674
BseLI CCNNNNNNNGG 4 cut(s) 486, 605, 824, 842
BseMII CTCAG 2 cut(s) 351, 411
BseNI ACTGG 4 cut(s) 133, 523, 818, 1040
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 3 cut(s) 90, 302, 643
BsgI GTGCAG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 2 cut(s) 500, 522
BsiEI CGRYCG 1 cut(s) 709
BsiHKAI GWGCWC 2 cut(s) 622, 797
BsiHKCI CYCGRG 1 cut(s) 259
BslI CCNNNNNNNGG 4 cut(s) 486, 605, 824, 842
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 500, 522
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 622, 797
Bsp143I GATC 5 cut(s) 136, 649, 746, 776, 1054
Bsp1720I GCTNAGC 1 cut(s) 365
BspACI CCGC 2 cut(s) 76, 593
BspANI GGCC 2 cut(s) 500, 522
BspCNI CTCAG 2 cut(s) 352, 410
BspLI GGNNCC 3 cut(s) 133, 748, 859
BspPI GGATC 2 cut(s) 741, 754
BspQI GCTCTTC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 4 cut(s) 133, 523, 818, 1040
BssECI CCNNGG 2 cut(s) 39, 709
BssMI GATC 5 cut(s) 136, 649, 746, 776, 1054
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 5 cut(s) 193, 301, 424, 710, 979
Bst6I CTCTTC 1 cut(s) 535
BstAPI GCANNNNNTGC 2 cut(s) 350, 886
BstBAI YACGTR 1 cut(s) 1063
BstDEI CTNAG 3 cut(s) 360, 365, 397
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 2 cut(s) 688, 773
BstKTI GATC 5 cut(s) 139, 652, 749, 779, 1057
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 136, 649, 746, 776, 1054
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 5 cut(s) 312, 350, 866, 886, 965
BstNSI RCATGY 1 cut(s) 1003
BstSFI CTRYAG 1 cut(s) 1121
BstSLI GKGCMC 1 cut(s) 797
BstV1I GCAGC 3 cut(s) 90, 302, 643
BstV2I GAAGAC 1 cut(s) 721
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BsuRI GGCC 2 cut(s) 500, 522
BtgI CCRYGG 1 cut(s) 709
BtsCI GGATG 1 cut(s) 674
BtsI GCAGTG 3 cut(s) 474, 558, 633
BtsIMutI CAGTG 6 cut(s) 474, 558, 633, 825, 836, 975
CfoI GCGC 2 cut(s) 688, 773
Csp6I GTAC 4 cut(s) 402, 516, 997, 1060
CviAII CATG 2 cut(s) 145, 1000
CviQI GTAC 4 cut(s) 402, 516, 997, 1060
DdeI CTNAG 3 cut(s) 360, 365, 397
DpnI GATC 5 cut(s) 138, 651, 748, 778, 1056
DpnII GATC 5 cut(s) 136, 649, 746, 776, 1054
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 2 cut(s) 498, 520
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 170
Eco47III AGCGCT 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 516, 1002
Eco88I CYCGRG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 148, 1003
FatI CATG 2 cut(s) 144, 999
Fnu4HI GCNGC 3 cut(s) 79, 316, 657
FokI GGATG 1 cut(s) 681
Fsp4HI GCNGC 3 cut(s) 79, 316, 657
FspBI CTAG 3 cut(s) 53, 774, 1050
GlaI GCGC 2 cut(s) 687, 772
GluI GCNGC 3 cut(s) 79, 316, 657
GsuI CTGGAG 2 cut(s) 666, 1057
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 2 cut(s) 500, 522
HhaI GCGC 2 cut(s) 688, 773
Hin1II CATG 2 cut(s) 148, 1003
Hin6I GCGC 2 cut(s) 686, 771
HinP1I GCGC 2 cut(s) 686, 771
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 3 cut(s) 395, 494, 832
HphI GGTGA 2 cut(s) 215, 430
Hpy166II GTNNAC 2 cut(s) 189, 795
Hpy188I TCNGA 7 cut(s) 136, 274, 767, 1006, 1021, 1087, 1095
Hpy188III TCNNGA 4 cut(s) 210, 359, 645, 1050
Hpy8I GTNNAC 2 cut(s) 189, 795
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 409, 870, 1056
HpyCH4III ACNGT 5 cut(s) 193, 301, 424, 710, 979
HpyCH4IV ACGT 3 cut(s) 995, 1008, 1062
HpyCH4V TGCA 9 cut(s) 50, 71, 124, 318, 337, 659, 795, 889, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 312, 350, 866, 886, 965
HpyF3I CTNAG 3 cut(s) 360, 365, 397
HpySE526I ACGT 3 cut(s) 995, 1008, 1062
Hsp92II CATG 2 cut(s) 148, 1003
HspAI GCGC 2 cut(s) 686, 771
Kzo9I GATC 5 cut(s) 136, 649, 746, 776, 1054
LguI GCTCTTC 1 cut(s) 535
LmnI GCTCC 7 cut(s) 137, 553, 595, 617, 857, 892, 965
Lsp1109I GCAGC 3 cut(s) 90, 302, 643
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 53, 774, 1050
MaeII ACGT 3 cut(s) 995, 1008, 1062
MaeIII GTNAC 3 cut(s) 285, 418, 1040
MalI GATC 5 cut(s) 138, 651, 748, 778, 1056
MboI GATC 5 cut(s) 136, 649, 746, 776, 1054
MboII GAAGA 4 cut(s) 13, 498, 522, 726
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 2 cut(s) 622, 797
MluCI AATT 9 cut(s) 275, 442, 502, 553, 612, 802, 916, 1104, 1110
MlyI GAGTC 2 cut(s) 389, 488
MmeI TCCRAC 2 cut(s) 138, 1007
MnlI CCTC 6 cut(s) 106, 225, 255, 781, 923, 1085
MroXI GAANNNNTTC 1 cut(s) 529
MseI TTAA 5 cut(s) 308, 426, 471, 579, 801
MwoI GCNNNNNNNGC 5 cut(s) 312, 350, 866, 886, 965
NdeII GATC 5 cut(s) 136, 649, 746, 776, 1054
NlaIII CATG 2 cut(s) 148, 1003
NlaIV GGNNCC 3 cut(s) 133, 748, 859
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 3 cut(s) 285, 418, 1040
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 259
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 832
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 80, 317, 658
PleI GAGTC 2 cut(s) 389, 488
PpsI GAGTC 2 cut(s) 389, 488
Ppu21I YACGTR 1 cut(s) 1063
PscI ACATGT 1 cut(s) 999
PshBI ATTAAT 1 cut(s) 801
PspN4I GGNNCC 3 cut(s) 133, 748, 859
PspXI VCTCGAGB 1 cut(s) 259
PsrI GAACNNNNNNTAC 2 cut(s) 339, 371
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 4 cut(s) 403, 517, 998, 1061
RsaNI GTAC 4 cut(s) 402, 516, 997, 1060
SapI GCTCTTC 1 cut(s) 535
SaqAI TTAA 5 cut(s) 308, 426, 471, 579, 801
SatI GCNGC 3 cut(s) 79, 316, 657
Sau3AI GATC 5 cut(s) 136, 649, 746, 776, 1054
SchI GAGTC 2 cut(s) 389, 488
SduI GDGCHC 2 cut(s) 622, 797
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 1121
Sfr274I CTCGAG 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 9 cut(s) 275, 442, 502, 553, 612, 802, 916, 1104, 1110
SsiI CCGC 2 cut(s) 76, 593
SspMI CTAG 3 cut(s) 53, 774, 1050
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 5 cut(s) 193, 301, 424, 710, 979
TaiI ACGT 3 cut(s) 998, 1011, 1065
TaqI TCGA 4 cut(s) 260, 393, 637, 955
TasI AATT 9 cut(s) 275, 442, 502, 553, 612, 802, 916, 1104, 1110
TfiI GAWTC 1 cut(s) 832
Tru1I TTAA 5 cut(s) 308, 426, 471, 579, 801
Tru9I TTAA 5 cut(s) 308, 426, 471, 579, 801
TscAI CASTG 6 cut(s) 481, 565, 633, 825, 843, 982
TseFI GTSAC 3 cut(s) 285, 418, 1040
TseI GCWGC 3 cut(s) 78, 315, 656
Tsp45I GTSAC 3 cut(s) 285, 418, 1040
TspDTI ATGAA 3 cut(s) 727, 748, 1106
TspRI CASTG 6 cut(s) 481, 565, 633, 825, 843, 982
Van91I CCANNNNNTGG 1 cut(s) 486
VneI GTGCAC 1 cut(s) 793
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 1049
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 529
XspI CTAG 3 cut(s) 53, 774, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.