AT2G36835

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013519
Physical Location & Seq
Reverse (-)
15449580 .. 15451532
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36835.1

Sequence Viewer

Length: 375 bp
ATGGCGAAGAAAGGAGGAGCGACGCTAGCTGAGGATGCACCATGGCGAGTTTCGTCAGGAAGACCAGTGCCTAAGATCAGTCGCTCTCCGGTTTTATCTATCTCTCAAAACCCAGAAACCGATTACGCCATTTCCGTCATGAAGCATCCGAATCCTGTGGGAGGTGGGTTTGCGATGGAAGCTGTACTTGAATCCGCAGGACCTGAATGCGTTGTTCCTGGCCAAGTAACACCTCTTCGGTTACTTGGTGTTAAGGTGTGGCCTGTTGAAGTTGATCTTAAATTCTTGGAACCAGTGGGAAAGGAGCTGAAAATGCTTGGGAAGTTCATGGACAACGCTGTCGAGCTGATGAATAAGTCCTTCATTGACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

7.85

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36835
fragaria_vesca FvH4_6g16650 FvH4_6g16650 FvH4_6g16650
malus_domestica MD04G1090000.v1.1 MD12G1108500.v1.1
prunus_persica Prupe.7G126900_v2.0.a1
pyrus_communis pycom04g08510
rosa_chinensis RchiOBHm_Chr3g0470611
rosa_laevigata RLG00000024254
rosa_multiflora Rmu_sc0002115.1_g000019
rosa_roxburghii Rroxscaffold_6G00410690
rosa_rugosa Rorug03G0110500
rosa_samantha Rh3AG160600 Rh3BG185100 Rh3CG175600 Rh3DG189600
rosa_wichuraiana Rw3G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AciI CCGC 2 cut(s) 195, 370
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 191, 269
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 4 cut(s) 29, 182, 307, 346
AluI AGCT 4 cut(s) 29, 182, 307, 346
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 220, 260
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BbsI GAAGAC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 30
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 25, 154
BmtI GCTAGC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 65, 293
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 40, 145
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 65, 293
BseRI GAGGAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 222, 262
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 161
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 2 cut(s) 222, 262
Bsp143I GATC 2 cut(s) 75, 274
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 2 cut(s) 195, 370
BspANI GGCC 2 cut(s) 222, 262
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 65, 293
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 75, 274
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 30, 72
BstDSI CCRYGG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 40, 145
BstKTI GATC 2 cut(s) 78, 277
BstMBI GATC 2 cut(s) 75, 274
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 179, 313
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 222, 262
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 40, 145
BtsIMutI CAGTG 2 cut(s) 72, 300
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 185
CviAII CATG 3 cut(s) 42, 139, 328
CviJI RGCY 6 cut(s) 29, 182, 222, 262, 307, 346
CviKI_1 RGCY 6 cut(s) 29, 182, 222, 262, 307, 346
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 30, 72
DpnI GATC 2 cut(s) 77, 276
DpnII GATC 2 cut(s) 75, 274
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 200
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 45, 142, 331
FaiI YATR 3 cut(s) 43, 140, 329
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 261, 293
FatI CATG 3 cut(s) 41, 138, 327
FokI GGATG 2 cut(s) 47, 132
FspBI CTAG 1 cut(s) 26
HaeIII GGCC 2 cut(s) 222, 262
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 45, 142, 331
HinfI GANTC 2 cut(s) 151, 191
HpaII CCGG 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 57, 139
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 179, 313
HpyF3I CTNAG 2 cut(s) 30, 72
Hsp92II CATG 3 cut(s) 45, 142, 331
Kzo9I GATC 2 cut(s) 75, 274
LmnI GCTCC 2 cut(s) 17, 304
LweI GCATC 2 cut(s) 25, 154
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 226, 240
MalI GATC 2 cut(s) 77, 276
MboI GATC 2 cut(s) 75, 274
MboII GAAGA 3 cut(s) 19, 72, 227
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 222
MnlI CCTC 4 cut(s) 8, 25, 155, 243
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
MseI TTAA 2 cut(s) 252, 279
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 179, 313
NcoI CCATGG 1 cut(s) 41
NdeII GATC 2 cut(s) 75, 274
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 3 cut(s) 45, 142, 331
NlaIV GGNNCC 1 cut(s) 291
PagI TCATGA 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 151, 191
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 252, 279
Sau3AI GATC 2 cut(s) 75, 274
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 219
SetI ASST 8 cut(s) 31, 166, 184, 205, 235, 258, 309, 348
SfaNI GCATC 2 cut(s) 25, 154
SinI GGWCC 1 cut(s) 200
Sse9I AATT 1 cut(s) 281
SsiI CCGC 2 cut(s) 195, 370
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 281
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 2 cut(s) 151, 191
Tru1I TTAA 2 cut(s) 252, 279
Tru9I TTAA 2 cut(s) 252, 279
TscAI CASTG 2 cut(s) 72, 300
TspDTI ATGAA 4 cut(s) 155, 316, 352, 365
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 2 cut(s) 72, 300
VpaK11BI GGWCC 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 281
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.