MD04G1090000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013519
Physical Location & Seq
Reverse (-)
15977818 .. 15985658
7841 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1090000.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTCCCGCAAAGGAGGAGGAAGTGCTTCTTCACTCCCGAAGGACGTGCCTTGGAGGGCCTCAAACATCAAACCCATCCCCAAAATTCACCATTCCCCTCTTCTCCGCATAGCCCCCAACCCTACTTCCAACTATGCCCTCTCCGTCATGAAGCACCCGAATCCAGTCGGAAGTGGGTTGGCCATGGAAGCTATATTGGAATCCGCAGGACCGGATTGCATTGTCCCTGGACAAGTTGCACCCATCAAATTACTTGGTCTCAAGGTATGGCCATTTGAAGTTAACTTCAAATTTTTGGAACCAGTCGGGCGAGAGCTCAAGCAGCTTGGAAAGTTCATGGATGATGCCGTCAATCTCATGAATAAATCATTTATAGATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.82

Weight (kDa)

9.72

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36835
fragaria_vesca FvH4_6g16650 FvH4_6g16650 FvH4_6g16650
malus_domestica MD04G1090000.v1.1 MD12G1108500.v1.1
prunus_persica Prupe.7G126900_v2.0.a1
pyrus_communis pycom04g08510
rosa_chinensis RchiOBHm_Chr3g0470611
rosa_laevigata RLG00000024254
rosa_multiflora Rmu_sc0002115.1_g000019
rosa_roxburghii Rroxscaffold_6G00410690
rosa_rugosa Rorug03G0110500
rosa_samantha Rh3AG160600 Rh3BG185100 Rh3CG175600 Rh3DG189600
rosa_wichuraiana Rw3G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 7, 106, 204
AcoI YGGCCR 2 cut(s) 180, 269
AcsI RAATTY 2 cut(s) 84, 290
AgsI TTSAA 2 cut(s) 278, 289
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 3 cut(s) 191, 316, 325
AluI AGCT 3 cut(s) 191, 316, 325
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 3 cut(s) 57, 180, 269
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 2 cut(s) 84, 290
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 57, 209
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 2 cut(s) 182, 271
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 83, 251
BceAI ACGGC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 382
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 57, 209
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 334
BpuEI CTTGAG 2 cut(s) 245, 302
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 50, 183, 226
BsaWI WCCGGW 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 164, 302
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 50, 183, 226
BseGI GGATG 2 cut(s) 75, 346
BseNI ACTGG 2 cut(s) 164, 302
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 3 cut(s) 59, 182, 271
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 59, 182, 271
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 3 cut(s) 7, 106, 204
BspANI GGCC 3 cut(s) 59, 182, 271
BspHI TCATGA 2 cut(s) 147, 357
BspLI GGNNCC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 164, 302
BssECI CCNNGG 3 cut(s) 50, 183, 226
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 50, 183
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 75, 346
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 188, 322
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 59, 182, 271
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 75, 346
CciI TCATGA 2 cut(s) 147, 357
Cfr13I GGNCC 2 cut(s) 57, 209
CviAII CATG 4 cut(s) 148, 184, 337, 358
CviJI RGCY 7 cut(s) 59, 113, 182, 191, 271, 316, 325
CviKI_1 RGCY 7 cut(s) 59, 113, 182, 191, 271, 316, 325
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 180, 269
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 50, 183
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 50, 183
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 50, 183
FaeI CATG 4 cut(s) 151, 187, 340, 361
FaiI YATR 9 cut(s) 110, 135, 149, 185, 194, 268, 338, 359, 374
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 147, 183, 336, 357
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 2 cut(s) 62, 353
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 1 cut(s) 382
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 3 cut(s) 59, 182, 271
HapII CCGG 1 cut(s) 212
Hin1II CATG 4 cut(s) 151, 187, 340, 361
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 160, 200
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 37, 148, 358
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 219, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 322
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 4 cut(s) 151, 187, 340, 361
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 6 cut(s) 177, 192, 213, 225, 240, 315
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 382
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 2 cut(s) 21, 92
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 2 cut(s) 182, 271
MluCI AATT 3 cut(s) 84, 248, 290
MluNI TGGCCA 2 cut(s) 182, 271
MmeI TCCRAC 2 cut(s) 148, 153
MnlI CCTC 6 cut(s) 8, 11, 48, 70, 108, 149
Mox20I TGGCCA 2 cut(s) 182, 271
MroXI GAANNNNTTC 1 cut(s) 25
MscI TGGCCA 2 cut(s) 182, 271
MseI TTAA 1 cut(s) 282
Msp20I TGGCCA 2 cut(s) 182, 271
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 188, 322
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 376
NlaIII CATG 4 cut(s) 151, 187, 340, 361
NlaIV GGNNCC 1 cut(s) 300
PagI TCATGA 2 cut(s) 147, 357
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 160, 200
PkrI GCNGC 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 57, 209
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 57, 209
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 318
SetI ASST 5 cut(s) 48, 193, 267, 318, 327
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 260, 317
SmoI CTYRAG 2 cut(s) 260, 317
Sse9I AATT 3 cut(s) 84, 248, 290
SsiI CCGC 3 cut(s) 7, 106, 204
SspMI CTAG 1 cut(s) 382
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 50, 183
TaiI ACGT 1 cut(s) 48
TasI AATT 3 cut(s) 84, 248, 290
TfiI GAWTC 2 cut(s) 160, 200
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 164, 325, 374
TspGWI ACGGA 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 2 cut(s) 84, 290
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.